Wall clock time and date at job start Tue Mar 31 2020 14:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 C 1.52996 * 109.47006 * 174.37426 * 3 2 1 5 5 C 1.53002 * 109.47191 * 181.91095 * 4 3 2 6 6 N 1.46500 * 109.46885 * 294.37486 * 3 2 1 7 7 C 1.46501 * 120.00314 * 305.49535 * 6 3 2 8 8 H 1.09007 * 109.46687 * 352.21941 * 7 6 3 9 9 C 1.52998 * 109.47280 * 232.22340 * 7 6 3 10 10 C 1.50693 * 109.47366 * 112.21673 * 7 6 3 11 11 C 1.38232 * 120.00680 * 231.51640 * 10 7 6 12 12 C 1.38238 * 120.00427 * 179.97438 * 11 10 7 13 13 C 1.38233 * 119.99516 * 359.97438 * 12 11 10 14 14 C 1.38237 * 120.00585 * 359.97438 * 13 12 11 15 15 C 1.38236 * 119.99807 * 359.97438 * 14 13 12 16 16 S 1.65597 * 120.00145 * 125.50414 * 6 3 2 17 17 O 1.42098 * 106.40280 * 19.94686 * 16 6 3 18 18 O 1.42095 * 106.40635 * 152.87050 * 16 6 3 19 19 C 1.76208 * 107.21632 * 266.41117 * 16 6 3 20 20 H 1.08004 * 119.99490 * 5.11306 * 19 16 6 21 21 C 1.37873 * 120.00279 * 185.10677 * 19 16 6 22 22 N 1.31519 * 119.99899 * 0.02562 * 21 19 16 23 23 Si 1.86790 * 120.00188 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47178 * 60.00723 * 23 21 19 25 25 H 1.48503 * 109.47272 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47533 * 300.00551 * 23 21 19 27 27 H 1.08999 * 109.47193 * 185.87359 * 1 2 3 28 28 H 1.09004 * 109.46821 * 305.87219 * 1 2 3 29 29 H 1.09004 * 109.47417 * 65.87079 * 1 2 3 30 30 H 1.09007 * 109.46828 * 240.00312 * 2 1 3 31 31 H 1.09000 * 109.47016 * 120.00417 * 2 1 3 32 32 H 1.09001 * 109.46855 * 54.37184 * 3 2 1 33 33 H 1.09001 * 109.47184 * 301.90690 * 4 3 2 34 34 H 1.08996 * 109.47224 * 61.90901 * 4 3 2 35 35 H 1.09001 * 109.46726 * 299.99876 * 5 4 3 36 36 H 1.08999 * 109.46916 * 59.99346 * 5 4 3 37 37 H 1.09000 * 109.47218 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47506 * 41.38814 * 9 7 6 39 39 H 1.09000 * 109.47008 * 161.38647 * 9 7 6 40 40 H 1.08998 * 109.47322 * 281.38475 * 9 7 6 41 41 H 1.08004 * 119.99705 * 0.25578 * 11 10 7 42 42 H 1.07992 * 119.99724 * 179.97438 * 12 11 10 43 43 H 1.08007 * 119.99533 * 179.97438 * 13 12 11 44 44 H 1.07997 * 120.00245 * 179.97438 * 14 13 12 45 45 H 1.07994 * 120.00083 * 179.97438 * 15 14 13 46 46 H 0.96999 * 120.00067 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5634 1.4447 0.1414 5 6 4.0691 2.8879 0.1893 6 7 1.6654 2.0928 -1.2581 7 6 2.0380 1.4834 -2.5372 8 1 2.7003 0.6366 -2.3568 9 6 2.7576 2.5180 -3.4047 10 6 0.7970 1.0080 -3.2476 11 6 0.7244 -0.2895 -3.7189 12 6 -0.4143 -0.7257 -4.3701 13 6 -1.4806 0.1355 -4.5495 14 6 -1.4085 1.4327 -4.0773 15 6 -0.2702 1.8686 -3.4252 16 16 0.8208 3.5171 -1.2345 17 8 1.0173 4.0788 0.0558 18 8 1.1498 4.1987 -2.4372 19 6 -0.8902 3.1107 -1.3450 20 1 -1.2018 2.0767 -1.3277 21 6 -1.8311 4.1126 -1.4534 22 7 -1.4516 5.3716 -1.4749 23 14 -3.6449 3.6817 -1.5712 24 1 -4.0559 2.9337 -0.3560 25 1 -4.4439 4.9288 -1.6792 26 1 -3.8768 2.8402 -2.7725 27 1 -0.3633 -1.0223 0.1052 28 1 -0.3633 0.6022 0.8328 29 1 -0.3634 0.4201 -0.9379 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.5967 1.9845 0.8353 33 1 3.8438 0.9309 1.0609 34 1 4.0083 0.9320 -0.7114 35 1 3.7888 3.4018 -0.7302 36 1 3.6242 3.4007 1.0421 37 1 5.1545 2.8895 0.2896 38 1 3.4442 3.0963 -2.7864 39 1 3.3168 2.0084 -4.1894 40 1 2.0247 3.1864 -3.8564 41 1 1.5556 -0.9638 -3.5743 42 1 -0.4707 -1.7393 -4.7386 43 1 -2.3701 -0.2052 -5.0587 44 1 -2.2414 2.1056 -4.2179 45 1 -0.2137 2.8821 -3.0566 46 1 -2.1136 6.0765 -1.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:20 Heat of formation + Delta-G solvation = -58.275379 kcal Electronic energy + Delta-G solvation = -29000.302749 eV Core-core repulsion = 25402.696787 eV Total energy + Delta-G solvation = -3597.605962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.26996 -37.40170 -35.63690 -34.06436 -33.53618 -33.22910 -31.68901 -30.42212 -29.92933 -28.37071 -26.32270 -25.54569 -23.37447 -21.96832 -21.57599 -20.85478 -19.71250 -18.72846 -17.24233 -16.75703 -15.86240 -15.49152 -15.13256 -14.68104 -14.30497 -13.95672 -13.85428 -13.77346 -13.58993 -13.36796 -12.89687 -12.68482 -12.57404 -12.46140 -12.10129 -12.03930 -11.70474 -11.59044 -11.35582 -11.29696 -11.13988 -11.03652 -10.79909 -10.75639 -10.63788 -10.46218 -10.42309 -10.30107 -10.24734 -10.13333 -9.95465 -9.42153 -9.15066 -8.90432 -8.22587 -8.18211 -8.02287 -6.74474 -5.22242 1.89951 2.10476 2.27461 3.04159 3.10335 3.16101 4.01084 4.36157 4.48137 4.63821 5.10372 5.24843 5.37828 5.40840 5.44351 5.55440 5.61315 5.64268 5.73600 5.78152 5.82553 5.84520 5.90718 6.04879 6.08202 6.13595 6.26041 6.28374 6.31698 6.34734 6.36727 6.40788 6.44371 6.50450 6.55111 6.62231 6.76881 6.80376 6.84173 6.95155 7.03821 7.19306 7.28932 7.32503 7.39142 7.65984 7.76445 7.97881 8.83722 10.17788 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.008755 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.980068 B = 3197.583355 C = 4337.756119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.126 4.126 3 C 0.150 3.850 4 C -0.128 4.128 5 C -0.155 4.155 6 N -0.995 5.995 7 C 0.202 3.798 8 H 0.083 0.917 9 C -0.175 4.175 10 C -0.115 4.115 11 C -0.109 4.109 12 C -0.146 4.146 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.089 4.089 16 S 2.712 3.288 17 O -1.007 7.007 18 O -0.993 6.993 19 C -1.016 5.016 20 H 0.113 0.887 21 C 0.135 3.865 22 N -0.842 5.842 23 Si 0.907 3.093 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.259 1.259 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.175 0.825 46 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -10.648 -1.648 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C 0.043 3.957 4 C -0.167 4.167 5 C -0.212 4.212 6 N -0.828 5.828 7 C 0.096 3.904 8 H 0.101 0.899 9 C -0.234 4.234 10 C -0.116 4.116 11 C -0.128 4.128 12 C -0.164 4.164 13 C -0.143 4.143 14 C -0.141 4.141 15 C -0.107 4.107 16 S 2.813 3.187 17 O -0.998 6.998 18 O -0.984 6.984 19 C -1.148 5.148 20 H 0.131 0.869 21 C -0.083 4.083 22 N -0.472 5.472 23 Si 0.731 3.269 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.183 1.183 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.133 0.867 45 H 0.192 0.808 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.079 -9.573 -1.567 10.950 hybrid contribution -1.660 -0.805 -0.068 1.846 sum 3.418 -10.378 -1.635 11.048 Atomic orbital electron populations 1.21889 0.95350 1.00627 1.03701 1.21837 0.96871 0.96401 1.01378 1.20876 0.94179 0.93678 0.86932 1.21858 0.95988 0.97494 1.01368 1.21797 0.99777 0.96744 1.02891 1.58044 1.72512 1.43496 1.08786 1.19415 0.92456 0.96210 0.82366 0.89853 1.22663 1.02001 0.99185 0.99509 1.20307 0.96471 0.94337 1.00518 1.20814 0.97657 0.94969 0.99343 1.20832 0.94422 0.99011 1.02117 1.21064 0.98150 0.94411 1.00718 1.21100 0.98549 0.95538 0.98962 1.22784 0.91422 1.03958 0.92494 1.00799 0.74968 0.70289 0.72609 1.93331 1.87927 1.75501 1.43025 1.93349 1.85619 1.71556 1.47844 1.30840 1.16789 1.02266 1.64868 0.86949 1.24620 1.01242 0.93338 0.89146 1.69886 1.37643 0.99950 1.39682 0.86404 0.81531 0.78812 0.80183 1.18843 1.20273 1.18294 0.93772 0.92598 0.90908 0.91876 0.92047 0.88279 0.91680 0.92016 0.92825 0.91855 0.93320 0.92316 0.93123 0.87794 0.87163 0.87287 0.87355 0.86722 0.80814 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.71 37.16 0.36 -2.20 16 2 C -0.13 -1.80 5.29 -26.73 -0.14 -1.94 16 3 C 0.15 2.52 1.96 -67.93 -0.13 2.38 16 4 C -0.13 -1.81 5.40 -26.73 -0.14 -1.95 16 5 C -0.15 -2.44 9.77 37.16 0.36 -2.08 16 6 N -1.00 -19.10 1.43 -101.51 -0.15 -19.25 16 7 C 0.20 3.47 2.05 -69.09 -0.14 3.33 16 8 H 0.08 1.19 5.84 -51.93 -0.30 0.89 16 9 C -0.18 -3.10 8.01 37.16 0.30 -2.80 16 10 C -0.11 -2.05 3.87 -104.62 -0.41 -2.46 16 11 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16 12 C -0.15 -2.18 10.05 -39.58 -0.40 -2.58 16 13 C -0.13 -2.04 10.05 -39.58 -0.40 -2.43 16 14 C -0.12 -2.37 10.05 -39.58 -0.40 -2.76 16 15 C -0.09 -1.84 5.59 -39.58 -0.22 -2.06 16 16 S 2.71 67.54 4.25 -107.50 -0.46 67.09 16 17 O -1.01 -28.01 16.54 -57.17 -0.95 -28.96 16 18 O -0.99 -26.39 12.31 -57.17 -0.70 -27.09 16 19 C -1.02 -25.69 5.89 30.60 0.18 -25.51 16 20 H 0.11 2.68 4.87 -52.48 -0.26 2.42 16 21 C 0.13 3.51 5.46 -17.82 -0.10 3.41 16 22 N -0.84 -23.41 13.09 55.43 0.73 -22.69 16 23 Si 0.91 19.75 29.54 -169.99 -5.02 14.73 16 24 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.26 -5.32 6.74 56.52 0.38 -4.94 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.34 4.89 -51.93 -0.25 1.08 16 30 H 0.06 0.84 6.75 -51.93 -0.35 0.49 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.87 6.92 -51.93 -0.36 1.51 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.79 7.15 -51.93 -0.37 0.42 16 35 H 0.05 0.95 6.55 -51.93 -0.34 0.61 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.04 7.03 -51.93 -0.36 0.67 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 2.15 5.37 -51.93 -0.28 1.88 16 41 H 0.11 1.41 7.96 -52.48 -0.42 0.99 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 44 H 0.11 2.20 7.69 -52.49 -0.40 1.80 16 45 H 0.18 4.15 2.45 -36.17 -0.09 4.06 16 46 H 0.29 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -30.19 355.83 -9.59 -39.78 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.75 Total: 12.73 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: -1.66 Total: -41.71 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.58 Total: -41.94 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -1.65 Total: -56.05 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 67.54 SS G_CDS: -0.46 Total: 67.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.19 -9.59 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.494 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds