Wall clock time and date at job start Tue Mar 31 2020 14:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 C 1.52996 * 109.47006 * 174.37426 * 3 2 1 5 5 C 1.53002 * 109.47191 * 181.91095 * 4 3 2 6 6 N 1.46500 * 109.46885 * 294.37486 * 3 2 1 7 7 C 1.46501 * 120.00314 * 305.49535 * 6 3 2 8 8 H 1.09007 * 109.46687 * 352.21941 * 7 6 3 9 9 C 1.52998 * 109.47280 * 232.22340 * 7 6 3 10 10 C 1.50693 * 109.47366 * 112.21673 * 7 6 3 11 11 C 1.38232 * 120.00680 * 231.51640 * 10 7 6 12 12 C 1.38238 * 120.00427 * 179.97438 * 11 10 7 13 13 C 1.38233 * 119.99516 * 359.97438 * 12 11 10 14 14 C 1.38237 * 120.00585 * 359.97438 * 13 12 11 15 15 C 1.38236 * 119.99807 * 359.97438 * 14 13 12 16 16 S 1.65597 * 120.00145 * 125.50414 * 6 3 2 17 17 O 1.42098 * 106.40280 * 19.94686 * 16 6 3 18 18 O 1.42095 * 106.40635 * 152.87050 * 16 6 3 19 19 C 1.76208 * 107.21632 * 266.41117 * 16 6 3 20 20 H 1.08004 * 119.99490 * 5.11306 * 19 16 6 21 21 C 1.37873 * 120.00279 * 185.10677 * 19 16 6 22 22 N 1.31519 * 119.99899 * 0.02562 * 21 19 16 23 23 Si 1.86790 * 120.00188 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47178 * 60.00723 * 23 21 19 25 25 H 1.48503 * 109.47272 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47533 * 300.00551 * 23 21 19 27 27 H 1.08999 * 109.47193 * 185.87359 * 1 2 3 28 28 H 1.09004 * 109.46821 * 305.87219 * 1 2 3 29 29 H 1.09004 * 109.47417 * 65.87079 * 1 2 3 30 30 H 1.09007 * 109.46828 * 240.00312 * 2 1 3 31 31 H 1.09000 * 109.47016 * 120.00417 * 2 1 3 32 32 H 1.09001 * 109.46855 * 54.37184 * 3 2 1 33 33 H 1.09001 * 109.47184 * 301.90690 * 4 3 2 34 34 H 1.08996 * 109.47224 * 61.90901 * 4 3 2 35 35 H 1.09001 * 109.46726 * 299.99876 * 5 4 3 36 36 H 1.08999 * 109.46916 * 59.99346 * 5 4 3 37 37 H 1.09000 * 109.47218 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47506 * 41.38814 * 9 7 6 39 39 H 1.09000 * 109.47008 * 161.38647 * 9 7 6 40 40 H 1.08998 * 109.47322 * 281.38475 * 9 7 6 41 41 H 1.08004 * 119.99705 * 0.25578 * 11 10 7 42 42 H 1.07992 * 119.99724 * 179.97438 * 12 11 10 43 43 H 1.08007 * 119.99533 * 179.97438 * 13 12 11 44 44 H 1.07997 * 120.00245 * 179.97438 * 14 13 12 45 45 H 1.07994 * 120.00083 * 179.97438 * 15 14 13 46 46 H 0.96999 * 120.00067 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5634 1.4447 0.1414 5 6 4.0691 2.8879 0.1893 6 7 1.6654 2.0928 -1.2581 7 6 2.0380 1.4834 -2.5372 8 1 2.7003 0.6366 -2.3568 9 6 2.7576 2.5180 -3.4047 10 6 0.7970 1.0080 -3.2476 11 6 0.7244 -0.2895 -3.7189 12 6 -0.4143 -0.7257 -4.3701 13 6 -1.4806 0.1355 -4.5495 14 6 -1.4085 1.4327 -4.0773 15 6 -0.2702 1.8686 -3.4252 16 16 0.8208 3.5171 -1.2345 17 8 1.0173 4.0788 0.0558 18 8 1.1498 4.1987 -2.4372 19 6 -0.8902 3.1107 -1.3450 20 1 -1.2018 2.0767 -1.3277 21 6 -1.8311 4.1126 -1.4534 22 7 -1.4516 5.3716 -1.4749 23 14 -3.6449 3.6817 -1.5712 24 1 -4.0559 2.9337 -0.3560 25 1 -4.4439 4.9288 -1.6792 26 1 -3.8768 2.8402 -2.7725 27 1 -0.3633 -1.0223 0.1052 28 1 -0.3633 0.6022 0.8328 29 1 -0.3634 0.4201 -0.9379 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.5967 1.9845 0.8353 33 1 3.8438 0.9309 1.0609 34 1 4.0083 0.9320 -0.7114 35 1 3.7888 3.4018 -0.7302 36 1 3.6242 3.4007 1.0421 37 1 5.1545 2.8895 0.2896 38 1 3.4442 3.0963 -2.7864 39 1 3.3168 2.0084 -4.1894 40 1 2.0247 3.1864 -3.8564 41 1 1.5556 -0.9638 -3.5743 42 1 -0.4707 -1.7393 -4.7386 43 1 -2.3701 -0.2052 -5.0587 44 1 -2.2414 2.1056 -4.2179 45 1 -0.2137 2.8821 -3.0566 46 1 -2.1136 6.0765 -1.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:19 Heat of formation + Delta-G solvation = -76.700444 kcal Electronic energy + Delta-G solvation = -29001.101720 eV Core-core repulsion = 25402.696787 eV Total energy + Delta-G solvation = -3598.404933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61193 -38.73047 -37.53758 -36.09443 -35.26062 -34.84017 -32.89552 -31.76959 -31.31275 -29.76497 -28.19513 -26.89501 -24.75559 -23.29822 -22.74936 -22.16206 -21.22635 -20.50727 -18.79993 -18.51661 -17.30257 -17.18167 -16.71127 -16.17853 -15.85775 -15.47069 -15.31943 -15.21650 -14.94357 -14.80943 -14.32940 -14.03238 -13.99543 -13.81644 -13.76353 -13.37347 -13.22665 -13.15591 -12.90635 -12.85352 -12.63313 -12.47000 -12.41041 -12.29256 -12.28096 -12.00010 -11.85933 -11.70182 -11.61537 -11.55052 -11.42947 -11.06218 -10.99303 -10.73721 -9.66099 -9.53092 -9.38006 -8.69398 -7.20263 0.34912 0.68916 0.80144 1.28853 1.29598 1.41020 2.18764 2.61346 2.83717 3.17384 3.80599 3.82334 3.95263 4.13994 4.18562 4.26375 4.32949 4.34223 4.40907 4.48096 4.55725 4.58932 4.66267 4.68388 4.76211 4.84183 4.87744 4.98527 5.02629 5.04907 5.12572 5.14810 5.20366 5.22767 5.28302 5.33367 5.36452 5.45734 5.49562 5.59965 5.62806 5.76508 5.78651 5.88791 5.98836 6.07223 6.25910 6.40212 6.85540 8.23921 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.008755 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.980068 B = 3197.583355 C = 4337.756119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C 0.138 3.862 4 C -0.121 4.121 5 C -0.159 4.159 6 N -0.985 5.985 7 C 0.200 3.800 8 H 0.129 0.871 9 C -0.176 4.176 10 C -0.121 4.121 11 C -0.099 4.099 12 C -0.135 4.135 13 C -0.124 4.124 14 C -0.149 4.149 15 C -0.122 4.122 16 S 2.714 3.286 17 O -1.052 7.052 18 O -1.023 7.023 19 C -1.010 5.010 20 H 0.121 0.879 21 C 0.081 3.919 22 N -0.895 5.895 23 Si 0.957 3.043 24 H -0.257 1.257 25 H -0.270 1.270 26 H -0.242 1.242 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.024 0.976 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.135 0.865 46 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 -15.827 -2.343 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.155 4.155 3 C 0.032 3.968 4 C -0.160 4.160 5 C -0.217 4.217 6 N -0.821 5.821 7 C 0.095 3.905 8 H 0.146 0.854 9 C -0.234 4.234 10 C -0.123 4.123 11 C -0.118 4.118 12 C -0.152 4.152 13 C -0.142 4.142 14 C -0.167 4.167 15 C -0.140 4.140 16 S 2.817 3.183 17 O -1.042 7.042 18 O -1.013 7.013 19 C -1.142 5.142 20 H 0.139 0.861 21 C -0.131 4.131 22 N -0.527 5.527 23 Si 0.777 3.223 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.165 1.165 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.151 0.849 44 H 0.115 0.885 45 H 0.152 0.848 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.143 -14.751 -2.261 16.138 hybrid contribution -1.907 0.732 0.093 2.044 sum 4.236 -14.019 -2.169 14.805 Atomic orbital electron populations 1.21896 0.97096 1.01402 1.01462 1.21818 0.95215 0.94489 1.03958 1.21179 0.96245 0.94762 0.84597 1.21870 0.93522 0.96464 1.04095 1.21841 1.01680 0.97850 1.00288 1.57557 1.71684 1.42072 1.10811 1.19702 0.92994 0.96909 0.80921 0.85372 1.22610 1.01234 0.99196 1.00408 1.20364 0.95677 0.95259 1.00968 1.21218 0.98990 0.93941 0.97617 1.21307 0.93235 1.00345 1.00350 1.21347 0.99814 0.93111 0.99971 1.21100 0.97916 0.97134 1.00562 1.22472 0.93633 1.02859 0.95016 1.00366 0.75275 0.71498 0.71165 1.93264 1.88509 1.77561 1.44873 1.93319 1.85965 1.73563 1.48463 1.31001 1.17299 1.02532 1.63388 0.86074 1.25590 1.05787 0.93110 0.88639 1.69990 1.39111 1.01184 1.42398 0.85629 0.76519 0.79172 0.80932 1.18157 1.19465 1.16493 0.91350 0.94737 0.93385 0.89585 0.88879 0.91599 0.88505 0.89399 0.95714 0.94376 0.90305 0.93178 0.89573 0.91698 0.83055 0.83262 0.84881 0.88459 0.84779 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 9.71 71.98 0.70 -4.17 16 2 C -0.12 -2.87 5.29 30.59 0.16 -2.70 16 3 C 0.14 4.44 1.96 44.99 0.09 4.53 16 4 C -0.12 -3.03 5.40 30.59 0.17 -2.87 16 5 C -0.16 -4.96 9.77 71.98 0.70 -4.25 16 6 N -0.98 -37.72 1.43 -475.08 -0.68 -38.40 16 7 C 0.20 6.45 2.05 44.24 0.09 6.54 16 8 H 0.13 2.97 5.84 -2.38 -0.01 2.96 16 9 C -0.18 -6.16 8.01 71.98 0.58 -5.58 16 10 C -0.12 -4.08 3.87 -19.87 -0.08 -4.16 16 11 C -0.10 -2.56 9.67 22.27 0.22 -2.34 16 12 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 13 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 14 C -0.15 -5.72 10.05 22.27 0.22 -5.49 16 15 C -0.12 -5.11 5.59 22.27 0.12 -4.98 16 16 S 2.71 143.29 4.25 -56.49 -0.24 143.05 16 17 O -1.05 -62.83 16.54 -128.00 -2.12 -64.94 16 18 O -1.02 -58.57 12.31 -128.00 -1.58 -60.15 16 19 C -1.01 -53.77 5.89 67.73 0.40 -53.37 16 20 H 0.12 6.02 4.87 -2.91 -0.01 6.01 16 21 C 0.08 4.46 5.46 84.65 0.46 4.92 16 22 N -0.89 -53.27 13.09 21.45 0.28 -52.99 16 23 Si 0.96 41.82 29.54 68.60 2.03 43.84 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.24 -9.75 6.74 99.48 0.67 -9.08 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.69 4.89 -2.38 -0.01 1.68 16 30 H 0.09 1.76 6.75 -2.38 -0.02 1.74 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.56 6.92 -2.39 -0.02 2.54 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 1.78 7.15 -2.39 -0.02 1.77 16 35 H 0.02 0.88 6.55 -2.39 -0.02 0.87 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.80 7.03 -2.39 -0.02 1.78 16 39 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.82 5.37 -2.39 -0.01 2.81 16 41 H 0.15 2.68 7.96 -2.91 -0.02 2.66 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.10 3.90 7.69 -2.91 -0.02 3.88 16 45 H 0.14 6.80 2.45 -13.29 -0.03 6.77 16 46 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -74.42 355.83 2.89 -71.53 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: 0.92 Total: 38.56 kcal Atomic # 6 Polarization: -84.78 SS G_CDS: 4.28 Total: -80.50 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -0.40 Total: -91.39 kcal Atomic # 8 Polarization: -121.40 SS G_CDS: -3.69 Total: -125.09 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 143.29 SS G_CDS: -0.24 Total: 143.05 kcal Total: -74.42 2.89 -71.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.174 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds