Wall clock time and date at job start Tue Mar 31 2020 14:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46741 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46834 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47014 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47371 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47264 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.92346 * 90.00040 * 8 7 6 10 10 C 1.38101 * 120.07357 * 180.02562 * 9 8 7 11 11 C 1.38913 * 119.92837 * 0.02562 * 10 9 8 12 12 N 1.39671 * 120.07848 * 179.97438 * 11 10 9 13 13 S 1.65604 * 119.99953 * 74.99638 * 12 11 10 14 14 O 1.42102 * 106.40036 * 177.09782 * 13 12 11 15 15 O 1.42098 * 106.39897 * 310.01307 * 13 12 11 16 16 C 1.76191 * 107.21979 * 63.55631 * 13 12 11 17 17 H 1.08003 * 120.00391 * 5.16640 * 16 13 12 18 18 C 1.37875 * 120.00193 * 185.17317 * 16 13 12 19 19 N 1.31516 * 120.00506 * 180.02562 * 18 16 13 20 20 Si 1.86806 * 119.99811 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.46904 * 90.00210 * 20 18 16 22 22 H 1.48497 * 109.47076 * 210.00162 * 20 18 16 23 23 H 1.48502 * 109.46921 * 330.00568 * 20 18 16 24 24 C 1.38918 * 119.84567 * 0.25288 * 11 10 9 25 25 C 1.38105 * 119.92438 * 359.49042 * 24 11 10 26 26 H 1.08996 * 109.46906 * 299.99895 * 1 2 3 27 27 H 1.09004 * 109.46894 * 59.99548 * 1 2 3 28 28 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46906 * 240.00105 * 2 1 3 30 30 H 1.08993 * 109.46654 * 120.00046 * 2 1 3 31 31 H 1.09003 * 109.47111 * 59.99908 * 3 2 1 32 32 H 1.08995 * 109.47449 * 300.00098 * 3 2 1 33 33 H 1.08998 * 109.46795 * 60.00862 * 4 3 2 34 34 H 1.08993 * 109.47016 * 300.00107 * 4 3 2 35 35 H 1.08996 * 109.46987 * 59.99736 * 5 4 3 36 36 H 1.09008 * 109.46931 * 300.00105 * 5 4 3 37 37 H 1.09003 * 109.47417 * 59.99702 * 6 5 4 38 38 H 1.08999 * 109.47218 * 299.99494 * 6 5 4 39 39 H 1.09003 * 109.46999 * 59.99561 * 7 6 5 40 40 H 1.08999 * 109.46631 * 299.99969 * 7 6 5 41 41 H 1.08004 * 119.96282 * 359.97438 * 9 8 7 42 42 H 1.07997 * 120.04093 * 179.97438 * 10 9 8 43 43 H 0.96998 * 119.99840 * 254.99448 * 12 11 10 44 44 H 0.96997 * 120.00351 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03618 * 179.72962 * 24 11 10 46 46 H 1.07993 * 119.96284 * 180.25174 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1201 4.3275 0.0013 8 6 7.6271 4.3274 0.0019 9 6 8.3174 4.3272 -1.1962 10 6 9.6984 4.3266 -1.1993 11 6 10.3941 4.3257 0.0031 12 7 11.7908 4.3246 0.0037 13 16 12.6201 5.7093 -0.3668 14 8 13.9995 5.4041 -0.2134 15 8 12.0626 6.1987 -1.5788 16 6 12.2323 6.8976 0.8749 17 1 11.6268 6.6143 1.7232 18 6 12.7017 8.1892 0.7637 19 7 12.4127 9.0761 1.6908 20 14 13.7494 8.6791 -0.7032 21 1 12.8720 9.1680 -1.7970 22 1 14.6886 9.7574 -0.3026 23 1 14.5205 7.5014 -1.1762 24 6 9.6974 4.3201 1.2049 25 6 8.3164 4.3260 1.2007 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 3.7163 3.3985 0.8912 36 1 3.7171 3.3991 -0.8888 37 1 5.9734 2.3715 -0.8889 38 1 5.9734 2.3708 0.8911 39 1 5.7567 4.8413 0.8913 40 1 5.7568 4.8412 -0.8887 41 1 7.7759 4.3267 -2.1307 42 1 10.2370 4.3261 -2.1354 43 1 12.2750 3.5127 0.2211 44 1 12.7432 9.9847 1.6127 45 1 10.2352 4.3149 2.1415 46 1 7.7742 4.3257 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:47 Heat of formation + Delta-G solvation = -99.884195 kcal Electronic energy + Delta-G solvation = -24481.430950 eV Core-core repulsion = 20882.020694 eV Total energy + Delta-G solvation = -3599.410256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.28648 -37.08038 -35.71924 -35.35739 -34.48607 -33.79896 -33.03021 -31.23232 -30.61562 -28.44793 -26.41957 -25.70243 -23.04961 -22.39713 -21.36408 -21.18561 -20.57059 -19.20149 -17.68774 -17.13448 -16.68134 -16.33577 -15.44628 -15.39126 -15.05568 -14.68072 -14.41334 -14.13247 -13.81143 -13.54263 -13.44564 -13.35928 -13.05785 -12.98412 -12.84219 -12.55922 -12.17181 -12.07779 -11.68878 -11.49591 -11.39959 -11.37208 -11.25562 -11.07119 -11.00811 -10.83075 -10.79855 -10.66362 -10.59521 -10.53224 -10.45994 -9.96781 -9.48789 -9.22708 -8.89452 -8.58071 -8.06677 -6.80460 -5.34372 1.48254 1.76083 2.09988 3.07355 3.17199 3.24628 3.94210 4.01473 4.25818 4.37115 4.56495 4.59101 4.71366 4.80500 4.87041 4.99546 5.02596 5.20242 5.21211 5.27597 5.33507 5.37807 5.42805 5.44191 5.54759 5.63299 5.64893 5.72441 5.72952 5.75951 5.79258 5.83016 5.87321 5.91498 6.02504 6.06192 6.18640 6.21757 6.25123 6.37134 6.49973 6.72527 6.88504 6.93907 7.25897 7.48044 7.76213 8.21383 8.69819 10.31839 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030075 B = 0.002089 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.779035 B =13397.870365 C =13687.223227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.078 4.078 8 C -0.089 4.089 9 C -0.112 4.112 10 C -0.106 4.106 11 C 0.152 3.848 12 N -1.075 6.075 13 S 2.670 3.330 14 O -1.004 7.004 15 O -1.004 7.004 16 C -1.010 5.010 17 H 0.123 0.877 18 C 0.153 3.847 19 N -0.821 5.821 20 Si 0.815 3.185 21 H -0.245 1.245 22 H -0.257 1.257 23 H -0.233 1.233 24 C -0.110 4.110 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.412 0.588 44 H 0.281 0.719 45 H 0.128 0.872 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 -14.474 -2.046 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.115 4.115 8 C -0.090 4.090 9 C -0.131 4.131 10 C -0.127 4.127 11 C 0.057 3.943 12 N -0.826 5.826 13 S 2.773 3.227 14 O -0.995 6.995 15 O -0.993 6.993 16 C -1.145 5.145 17 H 0.141 0.859 18 C -0.067 4.067 19 N -0.450 5.450 20 Si 0.636 3.364 21 H -0.168 1.168 22 H -0.182 1.182 23 H -0.155 1.155 24 C -0.131 4.131 25 C -0.131 4.131 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.148 0.852 43 H 0.247 0.753 44 H 0.091 0.909 45 H 0.145 0.855 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.427 -14.054 -2.766 23.339 hybrid contribution 0.438 0.372 0.256 0.629 sum -17.988 -13.682 -2.511 22.740 Atomic orbital electron populations 1.21785 0.96043 1.01486 1.01772 1.21550 0.95735 0.97153 1.01963 1.21638 0.95668 0.96550 1.01998 1.21619 0.95075 0.97089 1.02063 1.21629 0.95559 0.96560 1.02054 1.21589 0.94728 0.96333 1.02441 1.20582 0.91135 0.97019 1.02813 1.19831 0.95341 1.00577 0.93237 1.20839 0.93514 1.01317 0.97447 1.21515 0.94354 0.98813 0.98021 1.17229 0.82730 1.01434 0.92874 1.53279 1.11766 1.28884 1.88635 1.01657 0.72405 0.73061 0.75602 1.93476 1.33040 1.84687 1.88251 1.93395 1.79196 1.79022 1.47723 1.30345 1.47798 1.09738 1.26626 0.85912 1.24427 0.92112 0.94889 0.95270 1.69984 1.38804 1.04327 1.31896 0.87659 0.82121 0.83353 0.83264 1.16841 1.18169 1.15533 1.21457 0.94314 0.99377 0.97914 1.20837 0.93568 1.01289 0.97433 0.92795 0.92807 0.92907 0.92117 0.92110 0.92093 0.92096 0.92064 0.92060 0.92016 0.92035 0.91849 0.91842 0.91110 0.91128 0.86064 0.85173 0.75267 0.90882 0.85451 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.48 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.77 5.21 -26.73 -0.14 -0.91 16 4 C -0.12 -0.84 5.22 -26.73 -0.14 -0.98 16 5 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 6 C -0.11 -1.00 5.20 -26.73 -0.14 -1.14 16 7 C -0.08 -0.81 5.34 -27.88 -0.15 -0.96 16 8 C -0.09 -1.22 5.14 -104.59 -0.54 -1.76 16 9 C -0.11 -1.66 9.69 -39.62 -0.38 -2.04 16 10 C -0.11 -1.86 9.29 -39.38 -0.37 -2.23 16 11 C 0.15 2.84 5.79 -83.79 -0.49 2.36 16 12 N -1.07 -21.20 5.70 32.41 0.18 -21.02 16 13 S 2.67 67.46 4.18 -107.50 -0.45 67.01 16 14 O -1.00 -27.10 16.58 -57.17 -0.95 -28.05 16 15 O -1.00 -26.81 15.42 -57.17 -0.88 -27.69 16 16 C -1.01 -28.50 10.20 30.60 0.31 -28.19 16 17 H 0.12 3.49 8.06 -52.48 -0.42 3.07 16 18 C 0.15 4.42 5.47 -17.82 -0.10 4.33 16 19 N -0.82 -23.81 13.96 55.43 0.77 -23.04 16 20 Si 0.82 21.13 26.32 -169.99 -4.47 16.66 16 21 H -0.24 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.23 -6.13 5.89 56.52 0.33 -5.79 16 24 C -0.11 -1.85 9.97 -39.38 -0.39 -2.24 16 25 C -0.11 -1.63 9.69 -39.61 -0.38 -2.02 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.13 2.27 7.93 -52.49 -0.42 1.85 16 43 H 0.41 6.74 8.95 -34.48 -0.31 6.43 16 44 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -32.67 388.97 -10.72 -43.39 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.96 Total: 5.10 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: -2.83 Total: -38.23 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.96 Total: -44.05 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.83 Total: -55.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.47 Total: 16.66 kcal Atomic # 16 Polarization: 67.46 SS G_CDS: -0.45 Total: 67.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.67 -10.72 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.492 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds