Wall clock time and date at job start Tue Mar 31 2020 14:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46741 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46834 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47014 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47371 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47264 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.92346 * 90.00040 * 8 7 6 10 10 C 1.38101 * 120.07357 * 180.02562 * 9 8 7 11 11 C 1.38913 * 119.92837 * 0.02562 * 10 9 8 12 12 N 1.39671 * 120.07848 * 179.97438 * 11 10 9 13 13 S 1.65604 * 119.99953 * 74.99638 * 12 11 10 14 14 O 1.42102 * 106.40036 * 177.09782 * 13 12 11 15 15 O 1.42098 * 106.39897 * 310.01307 * 13 12 11 16 16 C 1.76191 * 107.21979 * 63.55631 * 13 12 11 17 17 H 1.08003 * 120.00391 * 5.16640 * 16 13 12 18 18 C 1.37875 * 120.00193 * 185.17317 * 16 13 12 19 19 N 1.31516 * 120.00506 * 180.02562 * 18 16 13 20 20 Si 1.86806 * 119.99811 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.46904 * 90.00210 * 20 18 16 22 22 H 1.48497 * 109.47076 * 210.00162 * 20 18 16 23 23 H 1.48502 * 109.46921 * 330.00568 * 20 18 16 24 24 C 1.38918 * 119.84567 * 0.25288 * 11 10 9 25 25 C 1.38105 * 119.92438 * 359.49042 * 24 11 10 26 26 H 1.08996 * 109.46906 * 299.99895 * 1 2 3 27 27 H 1.09004 * 109.46894 * 59.99548 * 1 2 3 28 28 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46906 * 240.00105 * 2 1 3 30 30 H 1.08993 * 109.46654 * 120.00046 * 2 1 3 31 31 H 1.09003 * 109.47111 * 59.99908 * 3 2 1 32 32 H 1.08995 * 109.47449 * 300.00098 * 3 2 1 33 33 H 1.08998 * 109.46795 * 60.00862 * 4 3 2 34 34 H 1.08993 * 109.47016 * 300.00107 * 4 3 2 35 35 H 1.08996 * 109.46987 * 59.99736 * 5 4 3 36 36 H 1.09008 * 109.46931 * 300.00105 * 5 4 3 37 37 H 1.09003 * 109.47417 * 59.99702 * 6 5 4 38 38 H 1.08999 * 109.47218 * 299.99494 * 6 5 4 39 39 H 1.09003 * 109.46999 * 59.99561 * 7 6 5 40 40 H 1.08999 * 109.46631 * 299.99969 * 7 6 5 41 41 H 1.08004 * 119.96282 * 359.97438 * 9 8 7 42 42 H 1.07997 * 120.04093 * 179.97438 * 10 9 8 43 43 H 0.96998 * 119.99840 * 254.99448 * 12 11 10 44 44 H 0.96997 * 120.00351 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03618 * 179.72962 * 24 11 10 46 46 H 1.07993 * 119.96284 * 180.25174 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1201 4.3275 0.0013 8 6 7.6271 4.3274 0.0019 9 6 8.3174 4.3272 -1.1962 10 6 9.6984 4.3266 -1.1993 11 6 10.3941 4.3257 0.0031 12 7 11.7908 4.3246 0.0037 13 16 12.6201 5.7093 -0.3668 14 8 13.9995 5.4041 -0.2134 15 8 12.0626 6.1987 -1.5788 16 6 12.2323 6.8976 0.8749 17 1 11.6268 6.6143 1.7232 18 6 12.7017 8.1892 0.7637 19 7 12.4127 9.0761 1.6908 20 14 13.7494 8.6791 -0.7032 21 1 12.8720 9.1680 -1.7970 22 1 14.6886 9.7574 -0.3026 23 1 14.5205 7.5014 -1.1762 24 6 9.6974 4.3201 1.2049 25 6 8.3164 4.3260 1.2007 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 3.7163 3.3985 0.8912 36 1 3.7171 3.3991 -0.8888 37 1 5.9734 2.3715 -0.8889 38 1 5.9734 2.3708 0.8911 39 1 5.7567 4.8413 0.8913 40 1 5.7568 4.8412 -0.8887 41 1 7.7759 4.3267 -2.1307 42 1 10.2370 4.3261 -2.1354 43 1 12.2750 3.5127 0.2211 44 1 12.7432 9.9847 1.6127 45 1 10.2352 4.3149 2.1415 46 1 7.7742 4.3257 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:46 Heat of formation + Delta-G solvation = -119.397629 kcal Electronic energy + Delta-G solvation = -24482.277116 eV Core-core repulsion = 20882.020694 eV Total energy + Delta-G solvation = -3600.256422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.50961 -37.84056 -37.64382 -36.57587 -36.45882 -35.21712 -34.70603 -32.09037 -31.84679 -29.36216 -28.58021 -26.54072 -23.85076 -23.63434 -22.11629 -21.79961 -21.47576 -21.14135 -19.60236 -18.76331 -18.60558 -17.20248 -16.95126 -16.49494 -16.38462 -16.01851 -15.51795 -15.37986 -15.01454 -14.97007 -14.88834 -14.35829 -14.32310 -13.99322 -13.84080 -13.81437 -13.46904 -13.19823 -12.97959 -12.84307 -12.76627 -12.70221 -12.62549 -12.30445 -12.27252 -12.04578 -11.88834 -11.78040 -11.67160 -11.39167 -11.37119 -11.28745 -11.23745 -11.14906 -10.71595 -9.82394 -9.35078 -8.98083 -7.54379 -0.11576 0.49321 0.51896 1.03303 1.12267 1.17674 1.86386 2.40016 2.44358 2.80388 3.23056 3.74464 3.96017 4.03606 4.07101 4.11488 4.13698 4.23740 4.26999 4.38590 4.44015 4.48671 4.54569 4.59081 4.67508 4.80643 4.86631 4.88933 4.92180 5.08231 5.09097 5.11858 5.16735 5.18969 5.23934 5.29186 5.36585 5.37113 5.38052 5.47612 5.51284 5.56484 5.62338 5.63195 5.75504 5.98437 6.03220 6.32810 6.51026 8.19529 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030075 B = 0.002089 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.779035 B =13397.870365 C =13687.223227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.076 4.076 8 C -0.080 4.080 9 C -0.114 4.114 10 C -0.125 4.125 11 C 0.114 3.886 12 N -1.059 6.059 13 S 2.692 3.308 14 O -1.025 7.025 15 O -1.019 7.019 16 C -1.033 5.033 17 H 0.108 0.892 18 C 0.109 3.891 19 N -0.849 5.849 20 Si 0.837 3.163 21 H -0.238 1.238 22 H -0.220 1.220 23 H -0.242 1.242 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.426 0.574 44 H 0.292 0.708 45 H 0.129 0.871 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.715 -14.866 -2.485 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.145 4.145 7 C -0.113 4.113 8 C -0.080 4.080 9 C -0.132 4.132 10 C -0.146 4.146 11 C 0.020 3.980 12 N -0.815 5.815 13 S 2.794 3.206 14 O -1.016 7.016 15 O -1.009 7.009 16 C -1.166 5.166 17 H 0.126 0.874 18 C -0.108 4.108 19 N -0.479 5.479 20 Si 0.655 3.345 21 H -0.161 1.161 22 H -0.142 1.142 23 H -0.166 1.166 24 C -0.144 4.144 25 C -0.132 4.132 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.264 0.736 44 H 0.102 0.898 45 H 0.147 0.853 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.171 -14.427 -3.185 25.003 hybrid contribution 0.829 0.396 0.442 1.019 sum -19.342 -14.031 -2.743 24.052 Atomic orbital electron populations 1.21789 0.95674 1.01795 1.01862 1.21557 0.96096 0.96954 1.01899 1.21614 0.95265 0.96744 1.02018 1.21594 0.95413 0.96757 1.01912 1.21582 0.94449 0.96911 1.02403 1.21530 0.95622 0.95094 1.02291 1.20657 0.88483 0.98288 1.03884 1.20260 0.97280 0.98011 0.92459 1.21180 0.92533 1.00256 0.99227 1.21641 0.95757 0.99829 0.97368 1.17514 0.81860 1.04420 0.94170 1.52659 1.12619 1.27727 1.88454 1.00824 0.71901 0.73285 0.74604 1.93435 1.34625 1.85178 1.88332 1.93365 1.79479 1.80124 1.47922 1.30828 1.47450 1.10947 1.27367 0.87401 1.25146 0.93152 0.95241 0.97276 1.70001 1.39786 1.05158 1.33001 0.87318 0.81903 0.84009 0.81293 1.16127 1.14201 1.16557 1.21614 0.95577 0.99844 0.97385 1.21200 0.92727 1.00168 0.99139 0.92713 0.92710 0.92533 0.92184 0.92192 0.92070 0.92049 0.92220 0.92235 0.91686 0.91671 0.92040 0.92039 0.90105 0.90072 0.83355 0.85822 0.73561 0.89754 0.85350 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.35 5.93 30.60 0.18 -1.17 16 3 C -0.12 -1.31 5.21 30.60 0.16 -1.15 16 4 C -0.12 -1.42 5.22 30.60 0.16 -1.26 16 5 C -0.12 -1.43 5.21 30.59 0.16 -1.27 16 6 C -0.11 -1.61 5.20 30.59 0.16 -1.45 16 7 C -0.08 -1.34 5.34 29.85 0.16 -1.18 16 8 C -0.08 -1.99 5.14 -19.84 -0.10 -2.09 16 9 C -0.11 -3.15 9.69 22.25 0.22 -2.93 16 10 C -0.13 -4.33 9.29 22.40 0.21 -4.13 16 11 C 0.11 4.28 5.79 38.22 0.22 4.50 16 12 N -1.06 -42.15 5.70 -51.37 -0.29 -42.44 16 13 S 2.69 137.03 4.18 -56.49 -0.24 136.79 16 14 O -1.03 -55.60 16.58 -128.00 -2.12 -57.73 16 15 O -1.02 -54.58 15.42 -128.00 -1.97 -56.56 16 16 C -1.03 -59.20 10.20 67.73 0.69 -58.51 16 17 H 0.11 6.31 8.06 -2.91 -0.02 6.29 16 18 C 0.11 6.34 5.47 84.65 0.46 6.80 16 19 N -0.85 -49.43 13.96 21.45 0.30 -49.13 16 20 Si 0.84 42.25 26.32 68.60 1.81 44.05 16 21 H -0.24 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.22 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.24 -12.59 5.89 99.48 0.59 -12.00 16 24 C -0.12 -4.11 9.97 22.40 0.22 -3.89 16 25 C -0.11 -3.10 9.69 22.25 0.22 -2.89 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 40 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.12 4.33 7.93 -2.91 -0.02 4.31 16 43 H 0.43 14.03 8.95 -96.74 -0.87 13.17 16 44 H 0.29 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 46 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -69.54 388.97 1.26 -68.27 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.05 Total: 28.10 kcal Atomic # 6 Polarization: -75.20 SS G_CDS: 3.83 Total: -71.37 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: 0.01 Total: -91.57 kcal Atomic # 8 Polarization: -110.19 SS G_CDS: -4.10 Total: -114.28 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.81 Total: 44.05 kcal Atomic # 16 Polarization: 137.03 SS G_CDS: -0.24 Total: 136.79 kcal Total: -69.54 1.26 -68.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.124 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds