Wall clock time and date at job start Tue Mar 31 2020 15:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47384 * 2 1 4 4 C 1.53003 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46814 * 179.97438 * 4 3 2 6 6 C 1.36894 * 119.99685 * 96.39341 * 5 4 3 7 7 H 1.08000 * 119.99902 * 221.60560 * 6 5 4 8 8 C 1.39038 * 120.00043 * 41.34019 * 6 5 4 9 9 N 1.31376 * 119.99825 * 11.10994 * 8 6 5 10 10 Si 1.86791 * 119.99921 * 191.11443 * 8 6 5 11 11 H 1.48502 * 109.47095 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47383 * 119.99439 * 10 8 6 13 13 H 1.48500 * 109.47264 * 239.99751 * 10 8 6 14 14 C 1.34775 * 120.00128 * 276.39145 * 5 4 3 15 15 O 1.21607 * 119.99605 * 356.06399 * 14 5 4 16 16 C 1.47625 * 120.00038 * 176.06948 * 14 5 4 17 17 C 1.39670 * 120.08134 * 214.69617 * 16 14 5 18 18 C 1.38360 * 119.91478 * 179.76299 * 17 16 14 19 19 O 1.35960 * 119.95844 * 180.23189 * 18 17 16 20 20 C 1.42902 * 117.00067 * 0.25209 * 19 18 17 21 21 C 1.38969 * 120.08183 * 0.48140 * 18 17 16 22 22 F 1.35101 * 119.91281 * 179.74495 * 21 18 17 23 23 C 1.38963 * 120.17139 * 359.77166 * 21 18 17 24 24 O 1.35956 * 119.96194 * 179.97438 * 23 21 18 25 25 C 1.42896 * 117.00161 * 180.02562 * 24 23 21 26 26 C 1.38363 * 120.08107 * 359.97438 * 23 21 18 27 27 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47341 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47113 * 60.00143 * 1 2 3 30 30 H 1.09005 * 109.47097 * 240.00108 * 2 1 3 31 31 H 1.08997 * 109.47131 * 120.00331 * 2 1 3 32 32 H 1.09005 * 109.46915 * 59.99997 * 3 2 1 33 33 H 1.08997 * 109.47257 * 300.00254 * 3 2 1 34 34 H 1.08991 * 109.46948 * 60.00303 * 4 3 2 35 35 H 1.08998 * 109.46742 * 299.99678 * 4 3 2 36 36 H 0.97002 * 119.99585 * 180.02562 * 9 8 6 37 37 H 1.08001 * 120.04454 * 359.97438 * 17 16 14 38 38 H 1.08998 * 109.47038 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.46863 * 300.00278 * 20 19 18 40 40 H 1.08999 * 109.47017 * 60.00318 * 20 19 18 41 41 H 1.08996 * 109.47008 * 299.99628 * 25 24 23 42 42 H 1.08996 * 109.47311 * 59.99938 * 25 24 23 43 43 H 1.09006 * 109.47284 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.03711 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4104 3.4256 1.1780 7 1 4.1327 4.4527 1.3637 8 6 5.1208 2.7132 2.1377 9 7 5.6426 1.5457 1.8364 10 14 5.3330 3.4158 3.8553 11 1 4.6557 4.7348 3.9378 12 1 4.7330 2.4879 4.8474 13 1 6.7795 3.5837 4.1462 14 6 4.1609 3.5016 -1.1603 15 8 3.9167 2.9448 -2.2134 16 6 4.5698 4.9201 -1.1526 17 6 4.0330 5.8085 -2.0872 18 6 4.4149 7.1382 -2.0738 19 8 3.8894 8.0047 -2.9802 20 6 2.9450 7.4747 -3.9125 21 6 5.3390 7.5881 -1.1385 22 9 5.7134 8.8862 -1.1318 23 6 5.8793 6.7062 -0.2104 24 8 6.7835 7.1509 0.7024 25 6 7.2986 6.1902 1.6264 26 6 5.4983 5.3761 -0.2142 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 6.1378 1.0485 2.5060 37 1 3.3181 5.4586 -2.8172 38 1 2.6047 8.2693 -4.5765 39 1 3.4171 6.6872 -4.4998 40 1 2.0925 7.0634 -3.3720 41 1 6.4785 5.7691 2.2077 42 1 7.8026 5.3936 1.0791 43 1 8.0082 6.6751 2.2969 44 1 5.9190 4.6912 0.5072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194306427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:03 Heat of formation + Delta-G solvation = -128.713989 kcal Electronic energy + Delta-G solvation = -28879.172842 eV Core-core repulsion = 24712.299257 eV Total energy + Delta-G solvation = -4166.873586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.30885 -40.15119 -38.82677 -38.60739 -35.97483 -35.29110 -34.12756 -31.70997 -30.50967 -29.42958 -28.39599 -27.54503 -26.58059 -25.19446 -23.78124 -22.17346 -21.64146 -20.55560 -19.66382 -18.57802 -17.06807 -16.97377 -16.70253 -16.30978 -16.12757 -15.64669 -15.29787 -14.86393 -14.62170 -14.57398 -14.52047 -14.21996 -14.09741 -13.88080 -13.41846 -13.03191 -12.68683 -12.35974 -12.20903 -12.10052 -11.93191 -11.74144 -11.56641 -11.39119 -11.30731 -11.23439 -11.12208 -10.99926 -10.63393 -10.59319 -10.50659 -10.35062 -10.15724 -9.85425 -9.26264 -8.71676 -7.92602 -7.86298 -7.61808 -6.56485 -4.33040 1.29459 1.66741 2.90987 2.98578 3.05028 3.07059 3.51801 3.82291 3.87684 4.21626 4.49144 4.58637 4.80361 5.14046 5.22261 5.27452 5.31024 5.40619 5.42941 5.52846 5.53590 5.56421 5.60490 5.69341 5.73756 5.84656 6.00863 6.19147 6.26138 6.28417 6.32780 6.37254 6.41940 6.55629 6.63785 6.68119 6.75971 6.93240 7.03565 7.17740 7.37093 7.40116 7.62718 7.76007 8.17653 8.81452 9.26624 9.70261 10.42803 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.005565 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.404170 B = 5030.182608 C = 7252.320908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.130 4.130 4 C 0.115 3.885 5 N -0.424 5.424 6 C -0.341 4.341 7 H 0.094 0.906 8 C 0.044 3.956 9 N -0.856 5.856 10 Si 0.900 3.100 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.274 1.274 14 C 0.507 3.493 15 O -0.594 6.594 16 C -0.026 4.026 17 C -0.178 4.178 18 C 0.112 3.888 19 O -0.311 6.311 20 C 0.027 3.973 21 C 0.038 3.962 22 F -0.133 7.133 23 C 0.111 3.889 24 O -0.310 6.310 25 C 0.024 3.976 26 C -0.165 4.165 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.273 0.727 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 4.432 -1.355 5.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.140 5.140 6 C -0.469 4.469 7 H 0.112 0.888 8 C -0.162 4.162 9 N -0.492 5.492 10 Si 0.726 3.274 11 H -0.186 1.186 12 H -0.200 1.200 13 H -0.200 1.200 14 C 0.296 3.704 15 O -0.481 6.481 16 C -0.029 4.029 17 C -0.198 4.198 18 C 0.066 3.934 19 O -0.225 6.225 20 C -0.068 4.068 21 C 0.018 3.982 22 F -0.111 7.111 23 C 0.064 3.936 24 O -0.224 6.224 25 C -0.071 4.071 26 C -0.184 4.184 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.709 4.394 -1.730 5.444 hybrid contribution 0.017 0.032 0.992 0.993 sum -2.693 4.426 -0.738 5.233 Atomic orbital electron populations 1.21756 0.96614 1.00728 1.01476 1.21415 0.94987 0.97590 1.01675 1.21930 0.97826 0.95701 1.01361 1.21503 0.90966 0.84413 1.03913 1.43305 1.53997 1.11884 1.04817 1.19626 1.34481 0.99237 0.93605 0.88824 1.25443 0.94813 0.96109 0.99878 1.69807 1.31503 1.13126 1.34717 0.86273 0.78720 0.79936 0.82487 1.18599 1.20015 1.19962 1.18158 0.81728 0.86132 0.84368 1.90640 1.56119 1.70080 1.31214 1.19698 0.95192 0.94610 0.93434 1.21052 1.05264 0.90696 1.02795 1.18306 0.94916 0.89276 0.90938 1.86060 1.57549 1.35802 1.43073 1.23091 0.91360 1.00819 0.91506 1.16055 1.03137 0.78975 1.00072 1.91436 1.90483 1.33044 1.96171 1.18584 0.92078 0.92259 0.90636 1.86034 1.55309 1.38026 1.42992 1.23173 0.99261 0.92890 0.91728 1.22252 1.00606 0.93568 1.01960 0.93378 0.93043 0.93092 0.92347 0.92194 0.92330 0.92884 0.92747 0.87200 0.91630 0.84098 0.88270 0.92213 0.92394 0.91964 0.91886 0.88309 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.15 0.37 -1.63 16 2 C -0.12 -1.89 5.93 -26.74 -0.16 -2.05 16 3 C -0.13 -2.49 5.49 -26.73 -0.15 -2.64 16 4 C 0.12 2.58 4.86 -4.04 -0.02 2.56 16 5 N -0.42 -10.03 2.52 -115.96 -0.29 -10.32 16 6 C -0.34 -7.87 6.15 -15.00 -0.09 -7.96 16 7 H 0.09 2.13 6.36 -52.49 -0.33 1.80 16 8 C 0.04 1.00 5.09 -17.45 -0.09 0.91 16 9 N -0.86 -20.46 11.21 55.50 0.62 -19.83 16 10 Si 0.90 17.40 28.60 -169.99 -4.86 12.54 16 11 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 13 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 14 C 0.51 12.11 7.32 -12.43 -0.09 12.02 16 15 O -0.59 -15.30 16.47 5.27 0.09 -15.21 16 16 C -0.03 -0.55 5.46 -105.00 -0.57 -1.12 16 17 C -0.18 -3.36 8.59 -39.00 -0.34 -3.70 16 18 C 0.11 2.03 6.68 -39.27 -0.26 1.77 16 19 O -0.31 -5.05 10.35 -19.61 -0.20 -5.25 16 20 C 0.03 0.32 9.81 101.05 0.99 1.31 16 21 C 0.04 0.74 7.32 -39.04 -0.29 0.45 16 22 F -0.13 -2.55 16.94 2.25 0.04 -2.51 16 23 C 0.11 2.12 6.68 -39.27 -0.26 1.85 16 24 O -0.31 -5.52 10.35 -19.60 -0.20 -5.72 16 25 C 0.02 0.36 9.81 101.05 0.99 1.35 16 26 C -0.16 -3.32 6.75 -39.00 -0.26 -3.58 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.28 7.56 -51.93 -0.39 0.89 16 35 H 0.11 2.58 5.51 -51.93 -0.29 2.30 16 36 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 37 H 0.14 2.48 6.21 -52.49 -0.33 2.16 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.68 7.64 -51.93 -0.40 0.28 16 40 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 41 H 0.06 0.97 6.65 -51.93 -0.35 0.62 16 42 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 43 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.18 3.71 3.87 -52.49 -0.20 3.51 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -27.71 364.35 -5.57 -33.28 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.02 Total: 8.00 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.23 Total: -0.45 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.33 Total: -30.16 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.32 Total: -26.18 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -4.86 Total: 12.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.71 -5.57 -33.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194306427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.433 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds