Wall clock time and date at job start Tue Mar 31 2020 15:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47384 * 2 1 4 4 C 1.53003 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46814 * 179.97438 * 4 3 2 6 6 C 1.36894 * 119.99685 * 96.39341 * 5 4 3 7 7 H 1.08000 * 119.99902 * 221.60560 * 6 5 4 8 8 C 1.39038 * 120.00043 * 41.34019 * 6 5 4 9 9 N 1.31376 * 119.99825 * 11.10994 * 8 6 5 10 10 Si 1.86791 * 119.99921 * 191.11443 * 8 6 5 11 11 H 1.48502 * 109.47095 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47383 * 119.99439 * 10 8 6 13 13 H 1.48500 * 109.47264 * 239.99751 * 10 8 6 14 14 C 1.34775 * 120.00128 * 276.39145 * 5 4 3 15 15 O 1.21607 * 119.99605 * 356.06399 * 14 5 4 16 16 C 1.47625 * 120.00038 * 176.06948 * 14 5 4 17 17 C 1.39670 * 120.08134 * 214.69617 * 16 14 5 18 18 C 1.38360 * 119.91478 * 179.76299 * 17 16 14 19 19 O 1.35960 * 119.95844 * 180.23189 * 18 17 16 20 20 C 1.42902 * 117.00067 * 0.25209 * 19 18 17 21 21 C 1.38969 * 120.08183 * 0.48140 * 18 17 16 22 22 F 1.35101 * 119.91281 * 179.74495 * 21 18 17 23 23 C 1.38963 * 120.17139 * 359.77166 * 21 18 17 24 24 O 1.35956 * 119.96194 * 179.97438 * 23 21 18 25 25 C 1.42896 * 117.00161 * 180.02562 * 24 23 21 26 26 C 1.38363 * 120.08107 * 359.97438 * 23 21 18 27 27 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47341 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47113 * 60.00143 * 1 2 3 30 30 H 1.09005 * 109.47097 * 240.00108 * 2 1 3 31 31 H 1.08997 * 109.47131 * 120.00331 * 2 1 3 32 32 H 1.09005 * 109.46915 * 59.99997 * 3 2 1 33 33 H 1.08997 * 109.47257 * 300.00254 * 3 2 1 34 34 H 1.08991 * 109.46948 * 60.00303 * 4 3 2 35 35 H 1.08998 * 109.46742 * 299.99678 * 4 3 2 36 36 H 0.97002 * 119.99585 * 180.02562 * 9 8 6 37 37 H 1.08001 * 120.04454 * 359.97438 * 17 16 14 38 38 H 1.08998 * 109.47038 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.46863 * 300.00278 * 20 19 18 40 40 H 1.08999 * 109.47017 * 60.00318 * 20 19 18 41 41 H 1.08996 * 109.47008 * 299.99628 * 25 24 23 42 42 H 1.08996 * 109.47311 * 59.99938 * 25 24 23 43 43 H 1.09006 * 109.47284 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.03711 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4104 3.4256 1.1780 7 1 4.1327 4.4527 1.3637 8 6 5.1208 2.7132 2.1377 9 7 5.6426 1.5457 1.8364 10 14 5.3330 3.4158 3.8553 11 1 4.6557 4.7348 3.9378 12 1 4.7330 2.4879 4.8474 13 1 6.7795 3.5837 4.1462 14 6 4.1609 3.5016 -1.1603 15 8 3.9167 2.9448 -2.2134 16 6 4.5698 4.9201 -1.1526 17 6 4.0330 5.8085 -2.0872 18 6 4.4149 7.1382 -2.0738 19 8 3.8894 8.0047 -2.9802 20 6 2.9450 7.4747 -3.9125 21 6 5.3390 7.5881 -1.1385 22 9 5.7134 8.8862 -1.1318 23 6 5.8793 6.7062 -0.2104 24 8 6.7835 7.1509 0.7024 25 6 7.2986 6.1902 1.6264 26 6 5.4983 5.3761 -0.2142 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9288 0.8909 36 1 6.1378 1.0485 2.5060 37 1 3.3181 5.4586 -2.8172 38 1 2.6047 8.2693 -4.5765 39 1 3.4171 6.6872 -4.4998 40 1 2.0925 7.0634 -3.3720 41 1 6.4785 5.7691 2.2077 42 1 7.8026 5.3936 1.0791 43 1 8.0082 6.6751 2.2969 44 1 5.9190 4.6912 0.5072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194306427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:02 Heat of formation + Delta-G solvation = -143.694193 kcal Electronic energy + Delta-G solvation = -28879.822433 eV Core-core repulsion = 24712.299257 eV Total energy + Delta-G solvation = -4167.523176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81467 -41.67096 -40.33871 -40.10935 -37.48960 -37.00510 -35.62922 -33.49831 -31.99965 -30.88357 -29.83479 -28.78524 -27.81609 -26.93899 -25.30908 -23.69444 -23.04868 -22.00875 -21.36867 -20.16706 -18.59044 -18.53453 -18.22879 -17.77339 -17.52514 -17.20856 -16.55623 -16.46405 -16.28655 -16.02530 -15.90416 -15.72161 -15.62795 -15.36634 -14.96138 -14.44121 -14.10650 -13.82189 -13.69038 -13.57457 -13.31895 -13.10651 -13.05878 -12.92262 -12.75731 -12.53989 -12.47257 -12.40944 -12.08898 -12.04309 -11.97774 -11.81660 -11.61618 -11.44043 -11.04706 -10.53915 -9.55425 -9.40000 -9.26343 -8.32947 -6.15928 -0.27986 0.18342 1.36884 1.46379 1.56487 1.69443 1.84363 2.23652 2.50822 2.60860 2.80514 3.00193 3.14307 3.72123 3.83657 3.89279 4.09136 4.18988 4.20388 4.30800 4.33714 4.36125 4.36450 4.40901 4.54001 4.66259 4.69674 4.80771 4.83179 4.85754 4.87656 4.92194 5.00244 5.07619 5.18157 5.18893 5.33397 5.38062 5.43462 5.44310 5.57868 5.95662 6.07545 6.21340 6.37173 7.01336 7.43493 7.88170 8.67817 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.005565 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.404170 B = 5030.182608 C = 7252.320908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.117 3.883 5 N -0.431 5.431 6 C -0.351 4.351 7 H 0.095 0.905 8 C 0.015 3.985 9 N -0.886 5.886 10 Si 0.957 3.043 11 H -0.255 1.255 12 H -0.278 1.278 13 H -0.261 1.261 14 C 0.495 3.505 15 O -0.625 6.625 16 C -0.045 4.045 17 C -0.175 4.175 18 C 0.125 3.875 19 O -0.318 6.318 20 C 0.016 3.984 21 C 0.028 3.972 22 F -0.133 7.133 23 C 0.116 3.884 24 O -0.314 6.314 25 C 0.017 3.983 26 C -0.168 4.168 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.277 0.723 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 5.518 -0.613 6.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.006 4.006 5 N -0.146 5.146 6 C -0.478 4.478 7 H 0.113 0.887 8 C -0.189 4.189 9 N -0.522 5.522 10 Si 0.779 3.221 11 H -0.179 1.179 12 H -0.204 1.204 13 H -0.185 1.185 14 C 0.285 3.715 15 O -0.513 6.513 16 C -0.048 4.048 17 C -0.195 4.195 18 C 0.079 3.921 19 O -0.231 6.231 20 C -0.077 4.077 21 C 0.007 3.993 22 F -0.111 7.111 23 C 0.069 3.931 24 O -0.228 6.228 25 C -0.077 4.077 26 C -0.188 4.188 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.154 0.846 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.219 5.486 -0.985 6.437 hybrid contribution 0.192 -0.282 0.700 0.779 sum -3.026 5.205 -0.284 6.027 Atomic orbital electron populations 1.21712 0.94229 1.02336 1.01754 1.21395 0.97033 0.95043 1.01817 1.21805 0.95376 0.97964 1.00438 1.21484 0.93057 0.83939 1.02159 1.43547 1.53689 1.12173 1.05184 1.19778 1.35036 0.99476 0.93538 0.88715 1.26106 0.93979 0.96078 1.02776 1.69903 1.32063 1.14271 1.35955 0.85423 0.79344 0.79364 0.77962 1.17899 1.20351 1.18534 1.18603 0.81572 0.87326 0.84013 1.90594 1.57674 1.71039 1.32040 1.19607 0.96579 0.93579 0.95071 1.21081 1.05306 0.90748 1.02405 1.18251 0.94096 0.88998 0.90785 1.86076 1.58163 1.35816 1.43083 1.23476 0.90619 1.02490 0.91158 1.16222 1.03556 0.79008 1.00483 1.91431 1.90524 1.32997 1.96198 1.18554 0.92036 0.91662 0.90801 1.86045 1.54800 1.38919 1.42988 1.23445 0.99603 0.93091 0.91554 1.22038 1.00863 0.93975 1.01899 0.91114 0.92594 0.93013 0.92423 0.91869 0.92611 0.94193 0.94911 0.88257 0.91332 0.83124 0.84740 0.91862 0.91751 0.92673 0.92035 0.84587 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.61 5.93 30.59 0.18 -3.43 16 3 C -0.12 -4.60 5.49 30.59 0.17 -4.43 16 4 C 0.12 5.42 4.86 86.38 0.42 5.84 16 5 N -0.43 -21.00 2.52 -639.04 -1.61 -22.61 16 6 C -0.35 -16.39 6.15 84.10 0.52 -15.87 16 7 H 0.10 4.36 6.36 -2.91 -0.02 4.34 16 8 C 0.01 0.67 5.09 84.95 0.43 1.11 16 9 N -0.89 -42.84 11.21 21.68 0.24 -42.60 16 10 Si 0.96 34.89 28.60 68.60 1.96 36.86 16 11 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 12 H -0.28 -10.27 7.11 99.48 0.71 -9.57 16 13 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 14 C 0.49 24.38 7.32 86.72 0.63 25.02 16 15 O -0.62 -33.31 16.47 -4.05 -0.07 -33.37 16 16 C -0.04 -1.94 5.46 -20.11 -0.11 -2.05 16 17 C -0.18 -6.60 8.59 22.64 0.19 -6.40 16 18 C 0.13 4.44 6.68 22.47 0.15 4.59 16 19 O -0.32 -9.74 10.35 -93.09 -0.96 -10.70 16 20 C 0.02 0.35 9.81 113.37 1.11 1.46 16 21 C 0.03 1.05 7.32 22.62 0.17 1.22 16 22 F -0.13 -4.92 16.94 44.97 0.76 -4.16 16 23 C 0.12 4.38 6.68 22.47 0.15 4.53 16 24 O -0.31 -10.76 10.35 -93.05 -0.96 -11.72 16 25 C 0.02 0.48 9.81 113.37 1.11 1.59 16 26 C -0.17 -6.84 6.75 22.65 0.15 -6.69 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.62 7.56 -2.39 -0.02 1.60 16 35 H 0.10 4.83 5.51 -2.39 -0.01 4.81 16 36 H 0.28 12.53 8.31 -92.71 -0.77 11.76 16 37 H 0.15 5.27 6.21 -2.91 -0.02 5.25 16 38 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.32 7.64 -2.39 -0.02 1.31 16 40 H 0.06 1.31 7.67 -2.39 -0.02 1.29 16 41 H 0.05 1.63 6.65 -2.39 -0.02 1.62 16 42 H 0.06 1.74 7.66 -2.39 -0.02 1.72 16 43 H 0.14 2.76 8.14 -2.38 -0.02 2.74 16 44 H 0.17 7.15 3.87 -2.91 -0.01 7.14 16 Total: -1.00 -60.12 364.35 6.38 -53.74 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 1.03 Total: 30.98 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.99 Total: 3.59 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -1.37 Total: -65.20 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.99 Total: -55.80 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.76 Total: -4.16 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 1.96 Total: 36.86 kcal Total: -60.12 6.38 -53.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194306427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.956 kcal (2) G-P(sol) polarization free energy of solvation -60.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds