Wall clock time and date at job start Tue Mar 31 2020 13:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38265 * 119.94460 * 2 1 4 4 C 1.38143 * 120.05633 * 180.02562 * 3 2 1 5 5 C 1.38734 * 119.94452 * 359.97438 * 4 3 2 6 6 O 1.35937 * 120.05449 * 179.97438 * 5 4 3 7 7 C 1.34682 * 116.99700 * 69.99887 * 6 5 4 8 8 O 1.21517 * 120.00067 * 5.95110 * 7 6 5 9 9 N 1.34772 * 120.00042 * 185.95042 * 7 6 5 10 10 C 1.46508 * 119.99845 * 0.02562 * 9 7 6 11 11 C 1.50703 * 109.46681 * 89.99971 * 10 9 7 12 12 H 1.07995 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99295 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00426 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99649 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46643 * 90.00342 * 15 13 11 17 17 H 1.48498 * 109.46926 * 210.00416 * 15 13 11 18 18 H 1.48500 * 109.46997 * 330.00497 * 15 13 11 19 19 C 1.46499 * 120.00190 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47047 * 89.99815 * 19 9 7 21 21 C 1.38230 * 119.99963 * 269.72927 * 20 19 9 22 22 C 1.38245 * 119.99707 * 179.76846 * 21 20 19 23 23 C 1.38235 * 119.99972 * 0.50393 * 22 21 20 24 24 C 1.38240 * 120.00082 * 359.74698 * 23 22 21 25 25 C 1.38235 * 119.99851 * 90.00166 * 20 19 9 26 26 C 1.38718 * 119.88665 * 0.27823 * 5 4 3 27 27 C 1.38149 * 119.94967 * 359.46979 * 26 5 4 28 28 H 1.09003 * 109.47640 * 89.99626 * 1 2 3 29 29 H 1.09001 * 109.47498 * 209.99706 * 1 2 3 30 30 H 1.08999 * 109.47368 * 329.99795 * 1 2 3 31 31 H 1.08002 * 119.97375 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.03004 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.46894 * 210.00036 * 10 9 7 34 34 H 1.09003 * 109.46858 * 329.99993 * 10 9 7 35 35 H 0.96997 * 120.00103 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46916 * 210.00028 * 19 9 7 37 37 H 1.08998 * 109.47196 * 330.00246 * 19 9 7 38 38 H 1.07995 * 120.00189 * 359.97438 * 21 20 19 39 39 H 1.07997 * 120.00054 * 180.22724 * 22 21 20 40 40 H 1.07992 * 120.00291 * 179.72620 * 23 22 21 41 41 H 1.07990 * 120.00290 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00169 * 0.02562 * 25 20 19 43 43 H 1.08005 * 120.02489 * 179.72393 * 26 5 4 44 44 H 1.07995 * 119.97847 * 180.23221 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6328 0.0000 -0.0016 7 6 6.2450 0.4110 1.1254 8 8 5.5890 0.6566 2.1184 9 7 7.5853 0.5499 1.1520 10 6 8.3762 0.2543 -0.0453 11 6 8.5157 1.5039 -0.8762 12 1 8.0611 2.4259 -0.5453 13 6 9.2246 1.4700 -2.0583 14 7 9.7786 0.3472 -2.4609 15 14 9.3969 3.0186 -3.0887 16 1 10.6136 3.7594 -2.6689 17 1 9.5123 2.6490 -4.5223 18 1 8.2019 3.8784 -2.8937 19 6 8.2513 0.9964 2.3780 20 6 8.6113 -0.2013 3.2189 21 6 7.7182 -0.6789 4.1596 22 6 8.0465 -1.7805 4.9276 23 6 9.2722 -2.3981 4.7620 24 6 10.1674 -1.9172 3.8248 25 6 9.8369 -0.8188 3.0533 26 6 3.5786 -1.2006 -0.0058 27 6 2.1972 -1.1981 0.0000 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6558 2.1326 -0.0004 32 1 4.1172 2.1368 -0.0010 33 1 9.3645 -0.0979 0.2500 34 1 7.8753 -0.5171 -0.6303 35 1 10.2770 0.3234 -3.2927 36 1 9.1573 1.5449 2.1202 37 1 7.5805 1.6463 2.9399 38 1 6.7627 -0.1935 4.2924 39 1 7.3473 -2.1560 5.6601 40 1 9.5305 -3.2559 5.3650 41 1 11.1250 -2.3994 3.6957 42 1 10.5367 -0.4427 2.3216 43 1 4.1173 -2.1368 -0.0104 44 1 1.6558 -2.1326 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194420741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:30 Heat of formation + Delta-G solvation = -22.631037 kcal Electronic energy + Delta-G solvation = -26992.174938 eV Core-core repulsion = 23260.670679 eV Total energy + Delta-G solvation = -3731.504259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69726 -39.20047 -38.47574 -36.59540 -35.09160 -32.76612 -32.06961 -31.14712 -30.86118 -30.61573 -27.45867 -26.86013 -25.51531 -23.19606 -22.72841 -22.24658 -21.98704 -20.99505 -19.80377 -17.55823 -17.13750 -16.86645 -16.23938 -16.01182 -15.49189 -15.03243 -14.93990 -14.75156 -14.50197 -14.31863 -13.76169 -13.70508 -13.34426 -13.17331 -13.08052 -12.99658 -12.39564 -12.32825 -12.26616 -11.84774 -11.63731 -11.48981 -11.43535 -11.24034 -11.06764 -10.90496 -10.78725 -10.63226 -10.32913 -10.21245 -9.89381 -9.77598 -8.82247 -8.64515 -8.57762 -8.52128 -8.25121 -7.92013 -6.15381 -4.21762 1.27500 1.52100 1.56139 1.68097 2.94640 3.24433 3.31520 3.35163 3.44049 3.89832 4.10243 4.34105 4.75249 4.90299 4.92335 5.10505 5.11928 5.14899 5.18974 5.24122 5.33539 5.42005 5.49611 5.53049 5.58943 5.72744 5.78379 5.79826 5.88984 6.01046 6.11484 6.13424 6.26800 6.34257 6.39623 6.59593 6.62800 6.65874 6.71643 6.74389 6.82680 6.96101 7.24264 7.26566 7.32243 7.46653 7.77836 8.07073 8.14972 8.79156 9.04924 9.44843 10.92258 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007163 B = 0.005238 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.842910 B = 5344.555389 C = 8529.924078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.117 4.117 5 C 0.117 3.883 6 O -0.289 6.289 7 C 0.651 3.349 8 O -0.586 6.586 9 N -0.569 5.569 10 C 0.242 3.758 11 C -0.535 4.535 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.173 3.827 20 C -0.101 4.101 21 C -0.097 4.097 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.098 4.098 26 C -0.118 4.118 27 C -0.108 4.108 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -3.361 9.014 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.135 4.135 5 C 0.074 3.926 6 O -0.200 6.200 7 C 0.406 3.594 8 O -0.477 6.477 9 N -0.305 5.305 10 C 0.123 3.877 11 C -0.574 4.574 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.051 3.949 20 C -0.103 4.103 21 C -0.115 4.115 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.137 4.137 27 C -0.126 4.126 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.292 -3.382 9.121 13.453 hybrid contribution 0.331 0.724 -0.798 1.127 sum -8.961 -2.657 8.323 12.516 Atomic orbital electron populations 1.20745 0.91182 1.02599 1.02134 1.19900 0.96055 0.93156 1.00774 1.20829 0.93195 0.97673 1.00783 1.21373 0.94683 0.97810 0.99647 1.18393 0.80488 0.93357 1.00328 1.84441 1.17761 1.79916 1.37925 1.18213 0.83689 0.76918 0.80603 1.90901 1.65045 1.57374 1.34382 1.47142 1.02162 1.66810 1.14372 1.19492 0.91024 0.97142 0.80068 1.21436 1.33996 0.95955 1.06023 0.92179 1.24907 0.95138 0.96409 0.97225 1.69921 1.34520 1.25654 1.22827 0.86509 0.78545 0.83029 0.79457 1.20503 1.21040 1.19827 1.20272 0.98224 0.92778 0.83642 1.20396 0.94406 0.98681 0.96769 1.21234 0.99137 0.96133 0.95006 1.21102 0.96864 0.96654 1.00213 1.21097 0.94425 0.99830 0.98798 1.21109 0.99619 0.97081 0.96733 1.21211 0.96503 0.95514 0.98403 1.21107 0.94291 0.97292 1.00997 1.20801 0.93023 0.97660 1.01163 0.91293 0.91672 0.91667 0.85737 0.85463 0.94258 0.93897 0.92547 0.88565 0.89695 0.85564 0.86546 0.86619 0.86291 0.85548 0.85279 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 2 C -0.10 -1.27 5.88 -104.60 -0.62 -1.88 16 3 C -0.11 -1.51 9.69 -39.61 -0.38 -1.89 16 4 C -0.12 -2.03 9.40 -39.43 -0.37 -2.40 16 5 C 0.12 2.25 5.25 -39.22 -0.21 2.05 16 6 O -0.29 -6.46 8.86 -24.75 -0.22 -6.68 16 7 C 0.65 14.52 8.18 54.05 0.44 14.96 16 8 O -0.59 -13.17 14.96 -19.28 -0.29 -13.46 16 9 N -0.57 -12.35 2.44 -182.23 -0.44 -12.80 16 10 C 0.24 5.95 5.17 -5.19 -0.03 5.93 16 11 C -0.54 -14.27 9.39 -34.44 -0.32 -14.60 16 12 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.17 3.16 5.53 -5.19 -0.03 3.14 16 20 C -0.10 -1.72 5.46 -104.62 -0.57 -2.29 16 21 C -0.10 -1.56 9.70 -39.58 -0.38 -1.95 16 22 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 24 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 25 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 26 C -0.12 -1.93 9.99 -39.44 -0.39 -2.32 16 27 C -0.11 -1.45 9.69 -39.60 -0.38 -1.84 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.04 1.16 7.37 -51.93 -0.38 0.77 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.10 1.68 8.02 -51.93 -0.42 1.26 16 37 H 0.08 1.51 7.36 -51.93 -0.38 1.13 16 38 H 0.13 2.11 7.60 -52.49 -0.40 1.71 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 43 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -30.71 382.37 -10.22 -40.93 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.19 Total: 5.07 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -4.56 Total: -10.41 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.29 Total: -37.10 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.51 Total: -20.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.71 -10.22 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194420741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.301 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds