Wall clock time and date at job start Tue Mar 31 2020 13:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38265 * 119.94460 * 2 1 4 4 C 1.38143 * 120.05633 * 180.02562 * 3 2 1 5 5 C 1.38734 * 119.94452 * 359.97438 * 4 3 2 6 6 O 1.35937 * 120.05449 * 179.97438 * 5 4 3 7 7 C 1.34682 * 116.99700 * 69.99887 * 6 5 4 8 8 O 1.21517 * 120.00067 * 5.95110 * 7 6 5 9 9 N 1.34772 * 120.00042 * 185.95042 * 7 6 5 10 10 C 1.46508 * 119.99845 * 0.02562 * 9 7 6 11 11 C 1.50703 * 109.46681 * 89.99971 * 10 9 7 12 12 H 1.07995 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99295 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00426 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99649 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46643 * 90.00342 * 15 13 11 17 17 H 1.48498 * 109.46926 * 210.00416 * 15 13 11 18 18 H 1.48500 * 109.46997 * 330.00497 * 15 13 11 19 19 C 1.46499 * 120.00190 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47047 * 89.99815 * 19 9 7 21 21 C 1.38230 * 119.99963 * 269.72927 * 20 19 9 22 22 C 1.38245 * 119.99707 * 179.76846 * 21 20 19 23 23 C 1.38235 * 119.99972 * 0.50393 * 22 21 20 24 24 C 1.38240 * 120.00082 * 359.74698 * 23 22 21 25 25 C 1.38235 * 119.99851 * 90.00166 * 20 19 9 26 26 C 1.38718 * 119.88665 * 0.27823 * 5 4 3 27 27 C 1.38149 * 119.94967 * 359.46979 * 26 5 4 28 28 H 1.09003 * 109.47640 * 89.99626 * 1 2 3 29 29 H 1.09001 * 109.47498 * 209.99706 * 1 2 3 30 30 H 1.08999 * 109.47368 * 329.99795 * 1 2 3 31 31 H 1.08002 * 119.97375 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.03004 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.46894 * 210.00036 * 10 9 7 34 34 H 1.09003 * 109.46858 * 329.99993 * 10 9 7 35 35 H 0.96997 * 120.00103 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46916 * 210.00028 * 19 9 7 37 37 H 1.08998 * 109.47196 * 330.00246 * 19 9 7 38 38 H 1.07995 * 120.00189 * 359.97438 * 21 20 19 39 39 H 1.07997 * 120.00054 * 180.22724 * 22 21 20 40 40 H 1.07992 * 120.00291 * 179.72620 * 23 22 21 41 41 H 1.07990 * 120.00290 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00169 * 0.02562 * 25 20 19 43 43 H 1.08005 * 120.02489 * 179.72393 * 26 5 4 44 44 H 1.07995 * 119.97847 * 180.23221 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6328 0.0000 -0.0016 7 6 6.2450 0.4110 1.1254 8 8 5.5890 0.6566 2.1184 9 7 7.5853 0.5499 1.1520 10 6 8.3762 0.2543 -0.0453 11 6 8.5157 1.5039 -0.8762 12 1 8.0611 2.4259 -0.5453 13 6 9.2246 1.4700 -2.0583 14 7 9.7786 0.3472 -2.4609 15 14 9.3969 3.0186 -3.0887 16 1 10.6136 3.7594 -2.6689 17 1 9.5123 2.6490 -4.5223 18 1 8.2019 3.8784 -2.8937 19 6 8.2513 0.9964 2.3780 20 6 8.6113 -0.2013 3.2189 21 6 7.7182 -0.6789 4.1596 22 6 8.0465 -1.7805 4.9276 23 6 9.2722 -2.3981 4.7620 24 6 10.1674 -1.9172 3.8248 25 6 9.8369 -0.8188 3.0533 26 6 3.5786 -1.2006 -0.0058 27 6 2.1972 -1.1981 0.0000 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6558 2.1326 -0.0004 32 1 4.1172 2.1368 -0.0010 33 1 9.3645 -0.0979 0.2500 34 1 7.8753 -0.5171 -0.6303 35 1 10.2770 0.3234 -3.2927 36 1 9.1573 1.5449 2.1202 37 1 7.5805 1.6463 2.9399 38 1 6.7627 -0.1935 4.2924 39 1 7.3473 -2.1560 5.6601 40 1 9.5305 -3.2559 5.3650 41 1 11.1250 -2.3994 3.6957 42 1 10.5367 -0.4427 2.3216 43 1 4.1173 -2.1368 -0.0104 44 1 1.6558 -2.1326 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194420741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:29 Heat of formation + Delta-G solvation = -36.315013 kcal Electronic energy + Delta-G solvation = -26992.768319 eV Core-core repulsion = 23260.670679 eV Total energy + Delta-G solvation = -3732.097641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26643 -40.48584 -39.72982 -38.10684 -36.86168 -34.74068 -33.21755 -32.50235 -32.05042 -31.78304 -29.38296 -28.06773 -26.83769 -25.11524 -23.95625 -23.45969 -23.33187 -22.21892 -21.24734 -19.24890 -18.77103 -18.68224 -17.66487 -17.53906 -16.85552 -16.50044 -16.26323 -16.15674 -16.00480 -15.67819 -15.12503 -14.78972 -14.53644 -14.50370 -14.39417 -14.27085 -14.07654 -13.61697 -13.46343 -13.37324 -13.13818 -12.88413 -12.79031 -12.64595 -12.54993 -12.43852 -12.22338 -12.17147 -11.86608 -11.75268 -11.71885 -11.59074 -10.64124 -10.02191 -9.83197 -9.81734 -9.65411 -9.46038 -8.24239 -6.38765 0.00511 0.32697 0.35792 0.50377 1.38306 1.39521 1.45346 1.51753 1.72084 2.36837 2.65167 2.88942 3.06697 3.19316 3.81616 3.86062 3.86660 3.92157 3.97862 4.16000 4.25228 4.29470 4.36482 4.38449 4.51873 4.56806 4.70250 4.72113 4.76205 4.79320 4.90342 5.01721 5.07806 5.10327 5.13204 5.17058 5.29331 5.37836 5.51135 5.54371 5.56416 5.57042 5.59791 5.68807 5.73725 5.98769 6.02132 6.11658 6.34122 6.69774 7.26683 7.38002 8.82923 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007163 B = 0.005238 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.842910 B = 5344.555389 C = 8529.924078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.088 4.088 3 C -0.107 4.107 4 C -0.138 4.138 5 C 0.067 3.933 6 O -0.311 6.311 7 C 0.645 3.355 8 O -0.594 6.594 9 N -0.571 5.571 10 C 0.262 3.738 11 C -0.549 4.549 12 H 0.052 0.948 13 C 0.021 3.979 14 N -0.920 5.920 15 Si 0.961 3.039 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.172 3.828 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.130 4.130 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.114 4.114 26 C -0.130 4.130 27 C -0.102 4.102 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.013 0.987 35 H 0.269 0.731 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -4.132 9.724 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.157 4.157 5 C 0.025 3.975 6 O -0.223 6.223 7 C 0.401 3.599 8 O -0.486 6.486 9 N -0.307 5.307 10 C 0.142 3.858 11 C -0.587 4.587 12 H 0.070 0.930 13 C -0.179 4.179 14 N -0.559 5.559 15 Si 0.786 3.214 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.199 1.199 19 C 0.051 3.949 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.133 4.133 26 C -0.149 4.149 27 C -0.120 4.120 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.171 0.829 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.962 -4.149 9.850 15.310 hybrid contribution 0.724 0.893 -0.969 1.504 sum -10.237 -3.256 8.881 13.938 Atomic orbital electron populations 1.20848 0.87693 1.04238 1.03638 1.20441 0.98422 0.92171 0.97758 1.21192 0.91754 0.99816 0.99670 1.21418 0.96352 0.96586 1.01321 1.18906 0.79358 0.95290 1.03962 1.84440 1.19989 1.79908 1.37947 1.18377 0.83774 0.76907 0.80853 1.90856 1.65145 1.57890 1.34664 1.47158 1.02049 1.66907 1.14593 1.19019 0.90420 0.95657 0.80689 1.21626 1.34119 0.96172 1.06805 0.93004 1.25685 0.94633 0.99413 0.98190 1.70020 1.35019 1.27488 1.23369 0.85512 0.78722 0.79324 0.77867 1.19146 1.20439 1.19931 1.20386 0.97915 0.93875 0.82689 1.20264 0.95459 0.98802 0.97492 1.21229 0.98590 0.97397 0.95867 1.21428 0.97849 0.95541 0.99916 1.21524 0.93426 1.00202 0.98178 1.21451 1.00918 0.96080 0.96042 1.21285 0.96129 0.96682 0.99193 1.21312 0.95823 0.96331 1.01427 1.21256 0.91712 0.99701 0.99309 0.89626 0.89845 0.90346 0.82893 0.87211 0.94880 0.96941 0.92216 0.88374 0.89747 0.86924 0.83925 0.82921 0.83692 0.86220 0.85132 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.23 0.71 -0.78 16 2 C -0.09 -2.03 5.88 -19.85 -0.12 -2.14 16 3 C -0.11 -2.90 9.69 22.25 0.22 -2.69 16 4 C -0.14 -5.04 9.40 22.37 0.21 -4.83 16 5 C 0.07 2.71 5.25 22.50 0.12 2.83 16 6 O -0.31 -14.98 8.86 0.22 0.00 -14.98 16 7 C 0.65 30.82 8.18 129.79 1.06 31.88 16 8 O -0.59 -28.29 14.96 19.78 0.30 -28.00 16 9 N -0.57 -26.50 2.44 -960.83 -2.34 -28.85 16 10 C 0.26 13.76 5.17 85.63 0.44 14.20 16 11 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 12 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 13 C 0.02 1.17 5.46 84.66 0.46 1.63 16 14 N -0.92 -52.99 13.29 21.45 0.28 -52.70 16 15 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.17 6.73 5.53 85.63 0.47 7.21 16 20 C -0.12 -4.21 5.46 -19.87 -0.11 -4.32 16 21 C -0.11 -3.70 9.70 22.27 0.22 -3.49 16 22 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 23 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 25 C -0.11 -3.71 9.70 22.27 0.22 -3.49 16 26 C -0.13 -4.34 9.99 22.36 0.22 -4.12 16 27 C -0.10 -2.54 9.69 22.26 0.22 -2.32 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 30 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.03 1.75 8.07 -2.39 -0.02 1.74 16 34 H 0.01 0.73 7.37 -2.39 -0.02 0.71 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.10 3.68 8.02 -2.39 -0.02 3.66 16 37 H 0.08 3.23 7.36 -2.39 -0.02 3.22 16 38 H 0.11 3.96 7.60 -2.91 -0.02 3.93 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.15 3.02 8.06 -2.92 -0.02 3.00 16 42 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -69.87 382.37 6.51 -63.37 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.99 Total: 25.22 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.25 Total: -9.60 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.06 Total: -81.55 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: 0.30 Total: -42.98 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.87 6.51 -63.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194420741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.053 kcal (2) G-P(sol) polarization free energy of solvation -69.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds