Wall clock time and date at job start Tue Mar 31 2020 15:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46646 * 2 1 4 4 C 1.53002 * 109.46646 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46914 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99650 * 275.00380 * 5 4 3 7 7 C 1.50701 * 109.47077 * 283.18646 * 6 5 4 8 8 H 1.08003 * 119.99840 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99816 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00095 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99526 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47076 * 90.00531 * 11 9 7 13 13 H 1.48503 * 109.47075 * 210.00263 * 11 9 7 14 14 H 1.48494 * 109.47377 * 330.00115 * 11 9 7 15 15 S 1.65599 * 119.99747 * 94.99749 * 5 4 3 16 16 O 1.42104 * 106.39874 * 164.43747 * 15 5 4 17 17 O 1.42099 * 106.40349 * 31.52331 * 15 5 4 18 18 C 1.76196 * 107.22345 * 277.97925 * 15 5 4 19 19 C 1.38234 * 120.00009 * 89.19623 * 18 15 5 20 20 C 1.50698 * 120.00038 * 0.02907 * 19 18 15 21 21 C 1.38232 * 119.99961 * 180.21622 * 19 18 15 22 22 C 1.38234 * 119.99900 * 359.53516 * 21 19 18 23 23 C 1.38234 * 120.00186 * 0.27527 * 22 21 19 24 24 C 1.38236 * 119.99673 * 268.99388 * 18 15 5 25 25 C 1.50692 * 120.00471 * 359.97438 * 24 18 15 26 26 H 1.09006 * 109.47499 * 299.99880 * 1 2 3 27 27 H 1.08999 * 109.47556 * 59.99655 * 1 2 3 28 28 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46907 * 240.00701 * 2 1 3 30 30 H 1.08995 * 109.47271 * 119.99641 * 2 1 3 31 31 H 1.08998 * 109.46895 * 60.00693 * 3 2 1 32 32 H 1.08999 * 109.47424 * 300.00425 * 3 2 1 33 33 H 1.08998 * 109.46907 * 60.00701 * 4 3 2 34 34 H 1.09001 * 109.47119 * 300.00066 * 4 3 2 35 35 H 1.08999 * 109.47489 * 43.19429 * 6 5 4 36 36 H 1.09004 * 109.46519 * 163.19300 * 6 5 4 37 37 H 0.97005 * 120.00140 * 179.97438 * 10 9 7 38 38 H 1.09009 * 109.46766 * 279.72364 * 20 19 18 39 39 H 1.09001 * 109.47645 * 39.72476 * 20 19 18 40 40 H 1.08992 * 109.47232 * 159.73177 * 20 19 18 41 41 H 1.07998 * 120.00051 * 179.81227 * 21 19 18 42 42 H 1.08004 * 120.00334 * 180.25896 * 22 21 19 43 43 H 1.07998 * 120.00303 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47282 * 277.01306 * 25 24 18 45 45 H 1.09003 * 109.46842 * 37.01378 * 25 24 18 46 46 H 1.09007 * 109.47239 * 157.01184 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.1975 3.5521 -1.2636 7 6 5.4375 3.0826 -1.9798 8 1 6.0594 2.3180 -1.5382 9 6 5.7781 3.6293 -3.1989 10 7 5.0210 4.5607 -3.7364 11 14 7.3148 3.0469 -4.0871 12 1 6.9715 1.9066 -4.9742 13 1 7.8672 4.1589 -4.9016 14 1 8.3272 2.6122 -3.0915 15 16 4.4526 3.5620 1.4290 16 8 5.2165 4.7112 1.0895 17 8 4.9301 2.5382 2.2910 18 6 2.9537 4.1536 2.1416 19 6 2.2199 3.3389 2.9835 20 6 2.7023 1.9450 3.2923 21 6 1.0417 3.8015 3.5390 22 6 0.6022 5.0821 3.2603 23 6 1.3380 5.8982 2.4216 24 6 2.5138 5.4339 1.8621 25 6 3.3163 6.3239 0.9485 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9565 -0.8899 33 1 3.9329 0.9290 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.3242 3.3656 -1.8886 36 1 4.2776 4.6200 -1.0604 37 1 5.2608 4.9456 -4.5940 38 1 2.4394 1.2792 2.4702 39 1 3.7848 1.9550 3.4198 40 1 2.2315 1.5926 4.2099 41 1 0.4669 3.1640 4.1943 42 1 -0.3162 5.4451 3.6977 43 1 0.9944 6.8986 2.2035 44 1 4.1153 6.8011 1.5158 45 1 3.7478 5.7258 0.1458 46 1 2.6662 7.0884 0.5228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194623112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:49 Heat of formation + Delta-G solvation = -54.870210 kcal Electronic energy + Delta-G solvation = -27622.910368 eV Core-core repulsion = 24025.452065 eV Total energy + Delta-G solvation = -3597.458303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.42111 -37.14004 -36.60615 -35.27941 -34.09568 -33.21332 -32.36830 -32.06342 -28.86690 -27.32034 -26.48973 -26.45749 -23.45849 -22.69053 -22.04006 -20.80101 -20.69101 -18.45027 -17.33112 -16.79311 -16.35935 -15.95066 -15.39754 -15.31647 -15.00315 -14.40512 -14.07363 -13.98857 -13.70456 -13.54186 -13.13834 -12.96861 -12.73997 -12.67349 -12.45099 -12.37314 -12.14342 -12.08201 -11.70922 -11.54844 -11.43721 -11.27976 -11.16019 -11.09195 -10.93415 -10.82372 -10.67474 -10.49328 -10.31304 -10.23031 -10.02657 -9.90479 -9.65843 -9.10285 -8.49561 -8.43636 -8.03654 -6.07831 -4.12010 0.87285 1.13438 1.40859 3.30476 3.37322 3.41618 3.46483 3.78597 4.32997 4.43943 4.68394 4.86530 4.88602 4.99795 5.10284 5.14215 5.26805 5.28751 5.29758 5.50063 5.50306 5.58224 5.65819 5.80375 5.85722 5.87454 5.90487 5.91920 5.97167 5.97968 6.07526 6.19463 6.30859 6.33757 6.34454 6.39213 6.47869 6.60827 6.63972 6.70302 6.77158 7.01134 7.27608 7.43672 7.60314 7.89603 8.19624 8.91100 9.53133 11.00658 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.005520 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.212246 B = 5071.384574 C = 6059.506127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.149 4.149 4 C 0.121 3.879 5 N -0.979 5.979 6 C 0.250 3.750 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 S 2.683 3.317 16 O -0.946 6.946 17 O -0.972 6.972 18 C -0.684 4.684 19 C 0.028 3.972 20 C -0.192 4.192 21 C -0.161 4.161 22 C -0.063 4.063 23 C -0.158 4.158 24 C 0.033 3.967 25 C -0.148 4.148 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -3.120 11.712 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.189 4.189 4 C -0.005 4.005 5 N -0.817 5.817 6 C 0.128 3.872 7 C -0.570 4.570 8 H 0.080 0.920 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.774 3.226 16 O -0.936 6.936 17 O -0.962 6.962 18 C -0.769 4.769 19 C 0.027 3.973 20 C -0.248 4.248 21 C -0.180 4.180 22 C -0.081 4.081 23 C -0.177 4.177 24 C 0.031 3.969 25 C -0.204 4.204 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.873 -2.884 11.884 15.717 hybrid contribution -0.317 0.010 -0.519 0.608 sum -10.190 -2.874 11.364 15.532 Atomic orbital electron populations 1.21759 0.96212 1.01076 1.01728 1.21466 0.95545 0.96909 1.02129 1.22235 0.97013 0.96732 1.02875 1.21280 0.92445 0.82993 1.03807 1.57362 1.81069 1.21257 1.22031 1.19248 0.97497 0.91878 0.78558 1.21469 1.09058 1.22342 1.04112 0.91957 1.24925 0.96998 0.94819 0.97176 1.69917 1.38250 1.26780 1.18289 0.86530 0.83214 0.78297 0.79627 1.20617 1.21080 1.19692 1.02155 0.74170 0.73522 0.72741 1.93602 1.67543 1.49662 1.82803 1.93290 1.79051 1.58134 1.65722 1.30992 1.26071 1.04014 1.15852 1.19591 0.92126 0.94888 0.90711 1.22200 1.08174 0.91811 1.02633 1.21096 0.97168 0.96672 1.03063 1.21327 0.98199 0.93690 0.94922 1.21129 0.95945 1.00448 1.00160 1.19726 0.93265 0.91835 0.92026 1.21512 0.99418 0.99768 0.99725 0.93068 0.92747 0.93102 0.91592 0.92096 0.92046 0.90994 0.89183 0.90590 0.94848 0.93183 0.92659 0.89697 0.84315 0.91401 0.85785 0.85855 0.85536 0.89024 0.88122 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.45 5.93 -26.73 -0.16 -1.61 16 3 C -0.15 -2.18 4.79 -26.73 -0.13 -2.31 16 4 C 0.12 2.07 5.36 -4.04 -0.02 2.05 16 5 N -0.98 -19.88 2.80 -115.66 -0.32 -20.21 16 6 C 0.25 6.06 5.28 -5.19 -0.03 6.04 16 7 C -0.53 -14.37 9.16 -34.44 -0.32 -14.68 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 11 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 S 2.68 53.28 5.09 -107.50 -0.55 52.74 16 16 O -0.95 -21.48 13.12 -57.17 -0.75 -22.23 16 17 O -0.97 -19.29 12.67 -57.17 -0.72 -20.02 16 18 C -0.68 -11.68 5.85 -39.58 -0.23 -11.91 16 19 C 0.03 0.42 4.76 -104.63 -0.50 -0.08 16 20 C -0.19 -2.61 8.95 36.00 0.32 -2.29 16 21 C -0.16 -2.04 9.67 -39.58 -0.38 -2.43 16 22 C -0.06 -0.76 10.05 -39.58 -0.40 -1.15 16 23 C -0.16 -2.13 9.67 -39.58 -0.38 -2.51 16 24 C 0.03 0.53 5.88 -104.63 -0.61 -0.08 16 25 C -0.15 -2.50 8.32 36.00 0.30 -2.20 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.87 5.28 -51.93 -0.27 0.60 16 32 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 33 H 0.09 1.59 7.97 -51.93 -0.41 1.18 16 34 H 0.08 1.19 6.45 -51.93 -0.33 0.86 16 35 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.05 1.29 4.95 -51.93 -0.26 1.03 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.08 1.08 5.01 -51.92 -0.26 0.82 16 39 H 0.14 2.17 4.62 -53.72 -0.25 1.92 16 40 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 41 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.09 1.52 7.82 -51.93 -0.41 1.11 16 45 H 0.10 2.00 3.79 -51.93 -0.20 1.80 16 46 H 0.07 0.97 8.04 -51.92 -0.42 0.55 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -30.77 365.96 -10.37 -41.14 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.99 Total: 4.24 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -2.27 Total: -32.74 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.41 Total: -44.91 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.47 Total: -42.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 53.28 SS G_CDS: -0.55 Total: 52.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.77 -10.37 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194623112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.731 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds