Wall clock time and date at job start Tue Mar 31 2020 15:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46646 * 2 1 4 4 C 1.53002 * 109.46646 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46914 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99650 * 275.00380 * 5 4 3 7 7 C 1.50701 * 109.47077 * 283.18646 * 6 5 4 8 8 H 1.08003 * 119.99840 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99816 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00095 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99526 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47076 * 90.00531 * 11 9 7 13 13 H 1.48503 * 109.47075 * 210.00263 * 11 9 7 14 14 H 1.48494 * 109.47377 * 330.00115 * 11 9 7 15 15 S 1.65599 * 119.99747 * 94.99749 * 5 4 3 16 16 O 1.42104 * 106.39874 * 164.43747 * 15 5 4 17 17 O 1.42099 * 106.40349 * 31.52331 * 15 5 4 18 18 C 1.76196 * 107.22345 * 277.97925 * 15 5 4 19 19 C 1.38234 * 120.00009 * 89.19623 * 18 15 5 20 20 C 1.50698 * 120.00038 * 0.02907 * 19 18 15 21 21 C 1.38232 * 119.99961 * 180.21622 * 19 18 15 22 22 C 1.38234 * 119.99900 * 359.53516 * 21 19 18 23 23 C 1.38234 * 120.00186 * 0.27527 * 22 21 19 24 24 C 1.38236 * 119.99673 * 268.99388 * 18 15 5 25 25 C 1.50692 * 120.00471 * 359.97438 * 24 18 15 26 26 H 1.09006 * 109.47499 * 299.99880 * 1 2 3 27 27 H 1.08999 * 109.47556 * 59.99655 * 1 2 3 28 28 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46907 * 240.00701 * 2 1 3 30 30 H 1.08995 * 109.47271 * 119.99641 * 2 1 3 31 31 H 1.08998 * 109.46895 * 60.00693 * 3 2 1 32 32 H 1.08999 * 109.47424 * 300.00425 * 3 2 1 33 33 H 1.08998 * 109.46907 * 60.00701 * 4 3 2 34 34 H 1.09001 * 109.47119 * 300.00066 * 4 3 2 35 35 H 1.08999 * 109.47489 * 43.19429 * 6 5 4 36 36 H 1.09004 * 109.46519 * 163.19300 * 6 5 4 37 37 H 0.97005 * 120.00140 * 179.97438 * 10 9 7 38 38 H 1.09009 * 109.46766 * 279.72364 * 20 19 18 39 39 H 1.09001 * 109.47645 * 39.72476 * 20 19 18 40 40 H 1.08992 * 109.47232 * 159.73177 * 20 19 18 41 41 H 1.07998 * 120.00051 * 179.81227 * 21 19 18 42 42 H 1.08004 * 120.00334 * 180.25896 * 22 21 19 43 43 H 1.07998 * 120.00303 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47282 * 277.01306 * 25 24 18 45 45 H 1.09003 * 109.46842 * 37.01378 * 25 24 18 46 46 H 1.09007 * 109.47239 * 157.01184 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.1975 3.5521 -1.2636 7 6 5.4375 3.0826 -1.9798 8 1 6.0594 2.3180 -1.5382 9 6 5.7781 3.6293 -3.1989 10 7 5.0210 4.5607 -3.7364 11 14 7.3148 3.0469 -4.0871 12 1 6.9715 1.9066 -4.9742 13 1 7.8672 4.1589 -4.9016 14 1 8.3272 2.6122 -3.0915 15 16 4.4526 3.5620 1.4290 16 8 5.2165 4.7112 1.0895 17 8 4.9301 2.5382 2.2910 18 6 2.9537 4.1536 2.1416 19 6 2.2199 3.3389 2.9835 20 6 2.7023 1.9450 3.2923 21 6 1.0417 3.8015 3.5390 22 6 0.6022 5.0821 3.2603 23 6 1.3380 5.8982 2.4216 24 6 2.5138 5.4339 1.8621 25 6 3.3163 6.3239 0.9485 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9565 -0.8899 33 1 3.9329 0.9290 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.3242 3.3656 -1.8886 36 1 4.2776 4.6200 -1.0604 37 1 5.2608 4.9456 -4.5940 38 1 2.4394 1.2792 2.4702 39 1 3.7848 1.9550 3.4198 40 1 2.2315 1.5926 4.2099 41 1 0.4669 3.1640 4.1943 42 1 -0.3162 5.4451 3.6977 43 1 0.9944 6.8986 2.2035 44 1 4.1153 6.8011 1.5158 45 1 3.7478 5.7258 0.1458 46 1 2.6662 7.0884 0.5228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194623112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:49 Heat of formation + Delta-G solvation = -72.470509 kcal Electronic energy + Delta-G solvation = -27623.673574 eV Core-core repulsion = 24025.452065 eV Total energy + Delta-G solvation = -3598.221509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51513 -38.66764 -38.10467 -36.88909 -35.53972 -34.40065 -34.20473 -33.14635 -30.31538 -28.58123 -28.18420 -27.53732 -25.06574 -23.90072 -23.51900 -21.92483 -21.81526 -19.95476 -18.82847 -18.55917 -18.02195 -17.40646 -16.69847 -16.44948 -16.36447 -16.08213 -15.38450 -15.14486 -15.05936 -14.87260 -14.35488 -14.28195 -14.16690 -14.12912 -13.76169 -13.74440 -13.34455 -13.22828 -13.21274 -13.00649 -12.92496 -12.86085 -12.58369 -12.44865 -12.27912 -12.19350 -12.15588 -11.87408 -11.81653 -11.75033 -11.52050 -11.34491 -11.17252 -10.58636 -10.23461 -9.72233 -9.55644 -8.19182 -6.31131 -0.52165 -0.11977 0.33600 1.39596 1.41723 1.52161 2.08304 2.41463 2.55066 2.88133 3.11855 3.35634 3.74311 3.78326 3.90756 3.98479 4.06398 4.23744 4.30763 4.34062 4.37402 4.49197 4.58941 4.64955 4.70815 4.72133 4.75005 4.82824 4.87485 4.91846 4.98628 5.07718 5.16165 5.18736 5.26295 5.31363 5.34928 5.38328 5.41464 5.47940 5.51988 5.56731 5.61704 5.76144 5.93603 5.97663 6.12494 6.77992 7.37425 8.88538 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.005520 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.212246 B = 5071.384574 C = 6059.506127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.139 4.139 4 C 0.114 3.886 5 N -0.986 5.986 6 C 0.266 3.734 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.272 1.272 15 S 2.680 3.320 16 O -0.988 6.988 17 O -0.980 6.980 18 C -0.695 4.695 19 C 0.017 3.983 20 C -0.194 4.194 21 C -0.155 4.155 22 C -0.050 4.050 23 C -0.158 4.158 24 C 0.008 3.992 25 C -0.149 4.149 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.020 0.980 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 -4.016 13.613 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.179 4.179 4 C -0.011 4.011 5 N -0.823 5.823 6 C 0.143 3.857 7 C -0.588 4.588 8 H 0.074 0.926 9 C -0.186 4.186 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.197 1.197 15 S 2.777 3.223 16 O -0.978 6.978 17 O -0.970 6.970 18 C -0.785 4.785 19 C 0.015 3.985 20 C -0.250 4.250 21 C -0.173 4.173 22 C -0.068 4.068 23 C -0.177 4.177 24 C 0.006 3.994 25 C -0.205 4.205 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.170 0.830 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.376 -3.824 13.765 18.901 hybrid contribution 0.377 0.316 -0.983 1.099 sum -11.998 -3.508 12.782 17.879 Atomic orbital electron populations 1.21737 0.94822 1.02234 1.01708 1.21477 0.96713 0.94771 1.02871 1.22138 0.94798 0.98728 1.02202 1.21494 0.94428 0.81396 1.03768 1.57247 1.81749 1.22418 1.20925 1.18765 0.95828 0.91256 0.79848 1.21808 1.10000 1.22277 1.04728 0.92613 1.25736 0.99944 0.94942 0.97981 1.70018 1.39794 1.27710 1.18740 0.85580 0.79507 0.78281 0.78507 1.19159 1.20495 1.19720 1.01819 0.75092 0.72855 0.72491 1.93549 1.69870 1.50973 1.83430 1.93310 1.80233 1.58236 1.65264 1.30380 1.25204 1.05172 1.17742 1.19846 0.92989 0.95134 0.90526 1.22184 1.06823 0.91528 1.04482 1.21552 0.96017 0.97429 1.02326 1.21864 0.98933 0.92916 0.93091 1.21467 0.94575 1.01961 0.99703 1.19788 0.94780 0.91634 0.93163 1.21426 0.99909 1.00105 0.99064 0.92334 0.93552 0.91353 0.91836 0.90439 0.91334 0.92998 0.90531 0.89211 0.96242 0.95065 0.92404 0.89160 0.86717 0.88092 0.82066 0.81439 0.82974 0.89794 0.91696 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.68 5.93 30.60 0.18 -2.50 16 3 C -0.14 -4.06 4.79 30.60 0.15 -3.92 16 4 C 0.11 4.04 5.36 86.38 0.46 4.50 16 5 N -0.99 -42.29 2.80 -519.83 -1.45 -43.75 16 6 C 0.27 13.79 5.28 85.63 0.45 14.25 16 7 C -0.55 -31.17 9.16 25.60 0.23 -30.93 16 8 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 9 C 0.01 0.77 5.46 84.66 0.46 1.24 16 10 N -0.92 -54.37 13.29 21.45 0.28 -54.09 16 11 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 S 2.68 111.78 5.09 -56.49 -0.29 111.49 16 16 O -0.99 -48.24 13.12 -128.00 -1.68 -49.92 16 17 O -0.98 -40.27 12.67 -128.00 -1.62 -41.89 16 18 C -0.69 -23.70 5.85 22.27 0.13 -23.57 16 19 C 0.02 0.46 4.76 -19.87 -0.09 0.36 16 20 C -0.19 -4.84 8.95 71.24 0.64 -4.20 16 21 C -0.15 -3.20 9.67 22.27 0.22 -2.98 16 22 C -0.05 -0.95 10.05 22.27 0.22 -0.73 16 23 C -0.16 -3.80 9.67 22.27 0.22 -3.59 16 24 C 0.01 0.25 5.88 -19.87 -0.12 0.14 16 25 C -0.15 -5.27 8.32 71.23 0.59 -4.68 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.89 5.28 -2.39 -0.01 1.87 16 32 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.08 2.85 7.97 -2.39 -0.02 2.83 16 34 H 0.09 2.87 6.45 -2.39 -0.02 2.85 16 35 H 0.02 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.03 1.75 4.95 -2.38 -0.01 1.74 16 37 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.09 2.11 5.01 -2.38 -0.01 2.10 16 39 H 0.12 3.51 4.62 -30.72 -0.14 3.37 16 40 H 0.10 1.80 8.01 -2.39 -0.02 1.78 16 41 H 0.16 2.15 8.04 -2.91 -0.02 2.13 16 42 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.08 2.98 7.82 -2.39 -0.02 2.96 16 45 H 0.06 2.80 3.79 -2.39 -0.01 2.79 16 46 H 0.09 2.65 8.04 -2.38 -0.02 2.63 16 Total: -1.00 -70.46 365.96 2.57 -67.89 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.84 Total: 22.31 kcal Atomic # 6 Polarization: -63.13 SS G_CDS: 4.46 Total: -58.68 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -1.17 Total: -97.83 kcal Atomic # 8 Polarization: -88.51 SS G_CDS: -3.30 Total: -91.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 111.78 SS G_CDS: -0.29 Total: 111.49 kcal Total: -70.46 2.57 -67.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194623112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.577 kcal (2) G-P(sol) polarization free energy of solvation -70.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds