Wall clock time and date at job start Tue Mar 31 2020 15:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47376 * 2 1 4 4 C 1.52993 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47281 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00042 * 275.97169 * 5 4 3 7 7 H 1.08004 * 120.00329 * 146.59795 * 6 5 4 8 8 C 1.38814 * 119.99798 * 326.59073 * 6 5 4 9 9 N 1.31621 * 120.00164 * 336.11374 * 8 6 5 10 10 Si 1.86803 * 119.99723 * 156.11292 * 8 6 5 11 11 H 1.48497 * 109.47247 * 90.00227 * 10 8 6 12 12 H 1.48504 * 109.46978 * 210.00183 * 10 8 6 13 13 H 1.48495 * 109.47407 * 329.99924 * 10 8 6 14 14 S 1.65601 * 119.99675 * 95.97004 * 5 4 3 15 15 O 1.42097 * 106.39896 * 156.46114 * 14 5 4 16 16 O 1.42096 * 106.40515 * 23.53807 * 14 5 4 17 17 C 1.76205 * 107.21684 * 269.99674 * 14 5 4 18 18 C 1.38255 * 120.00056 * 269.98241 * 17 14 5 19 19 C 1.38218 * 119.99571 * 180.02562 * 18 17 14 20 20 C 1.38251 * 119.99997 * 359.80938 * 19 18 17 21 21 C 1.38211 * 120.00350 * 0.44640 * 20 19 18 22 22 C 1.50700 * 120.00267 * 179.78969 * 21 20 19 23 23 C 1.52997 * 109.47373 * 59.72306 * 22 21 20 24 24 C 1.53001 * 109.46679 * 299.71992 * 22 21 20 25 25 C 1.38214 * 119.99518 * 90.00300 * 17 14 5 26 26 H 1.09006 * 109.46860 * 299.99569 * 1 2 3 27 27 H 1.08995 * 109.47437 * 59.99295 * 1 2 3 28 28 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46860 * 240.00431 * 2 1 3 30 30 H 1.08995 * 109.47437 * 120.00705 * 2 1 3 31 31 H 1.09006 * 109.46774 * 60.00378 * 3 2 1 32 32 H 1.09007 * 109.47094 * 300.00865 * 3 2 1 33 33 H 1.08999 * 109.47530 * 60.00303 * 4 3 2 34 34 H 1.08999 * 109.47208 * 300.00026 * 4 3 2 35 35 H 0.96997 * 119.99446 * 180.02562 * 9 8 6 36 36 H 1.07994 * 120.00020 * 359.97438 * 18 17 14 37 37 H 1.08002 * 119.99543 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.99746 * 180.23110 * 20 19 18 39 39 H 1.09000 * 109.47267 * 179.72711 * 22 21 20 40 40 H 1.09001 * 109.47049 * 59.99800 * 23 22 21 41 41 H 1.09003 * 109.46817 * 300.00160 * 23 22 21 42 42 H 1.08995 * 109.47157 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47386 * 60.00559 * 24 22 21 44 44 H 1.09004 * 109.47025 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.47544 * 299.99902 * 24 22 21 46 46 H 1.07998 * 120.00417 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1698 3.5110 -1.1791 7 1 3.9948 4.5766 -1.2017 8 6 4.5078 2.8383 -2.3453 9 7 5.1638 1.6990 -2.2814 10 14 4.0316 3.5500 -4.0055 11 1 5.1192 4.4346 -4.4952 12 1 3.8178 2.4454 -4.9747 13 1 2.7792 4.3357 -3.8665 14 16 4.4756 3.5537 1.4267 15 8 5.3864 4.5926 1.0944 16 8 4.7879 2.5077 2.3363 17 6 3.0289 4.3416 2.0520 18 6 2.7483 5.6495 1.7027 19 6 1.6137 6.2677 2.1937 20 6 0.7575 5.5767 3.0309 21 6 1.0407 4.2709 3.3843 22 6 0.1099 3.5194 4.3006 23 6 -1.2796 3.4426 3.6649 24 6 0.0172 4.2481 5.6427 25 6 2.1749 3.6521 2.8920 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 5.4002 1.2292 -3.0964 36 1 3.4160 6.1885 1.0470 37 1 1.3947 7.2895 1.9212 38 1 -0.1311 6.0586 3.4115 39 1 0.4926 2.5114 4.4603 40 1 -1.2135 2.9234 2.7087 41 1 -1.6624 4.4506 3.5052 42 1 -1.9530 2.8994 4.3278 43 1 -0.3656 5.2562 5.4832 44 1 -0.6565 3.7048 6.3054 45 1 1.0071 4.3028 6.0957 46 1 2.3940 2.6304 3.1647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195141139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:06 Heat of formation + Delta-G solvation = -68.878509 kcal Electronic energy + Delta-G solvation = -27078.190913 eV Core-core repulsion = 23480.125165 eV Total energy + Delta-G solvation = -3598.065748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.38092 -36.40571 -36.05315 -35.35713 -34.65638 -33.79092 -31.28835 -30.92363 -29.68178 -28.11901 -27.24349 -24.63474 -23.53553 -22.64121 -22.25688 -20.55684 -20.25292 -18.35560 -17.35442 -16.81554 -16.27766 -15.60674 -15.57042 -14.81940 -14.66210 -14.46923 -14.24918 -13.79619 -13.65215 -13.53570 -13.41753 -13.23741 -12.56745 -12.38635 -12.25452 -12.14783 -12.04721 -11.81380 -11.51230 -11.37797 -11.28222 -11.23837 -11.02234 -11.01170 -10.90267 -10.82210 -10.67706 -10.59058 -10.39589 -10.30514 -10.05703 -9.91466 -9.68324 -9.09042 -8.92357 -8.57420 -7.68107 -6.23925 -3.91852 1.12957 1.54306 1.57730 3.21403 3.28929 3.32789 3.70341 4.18040 4.49292 4.58882 4.74238 4.80198 5.05732 5.08408 5.11513 5.16559 5.27750 5.43319 5.46956 5.48987 5.49654 5.55651 5.63344 5.64373 5.70102 5.81416 5.93172 5.96942 6.02886 6.14091 6.17282 6.21583 6.23114 6.28794 6.37372 6.43611 6.50142 6.51944 6.62740 6.67082 6.77835 6.94404 7.11321 7.34456 7.44954 7.82167 8.45006 9.03105 9.40628 10.77712 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.005305 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.174462 B = 5276.889426 C = 6074.591834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.114 3.886 5 N -0.840 5.840 6 C -0.286 4.286 7 H 0.090 0.910 8 C 0.041 3.959 9 N -0.857 5.857 10 Si 0.912 3.088 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.270 1.270 14 S 2.633 3.367 15 O -0.972 6.972 16 O -0.997 6.997 17 C -0.647 4.647 18 C -0.022 4.022 19 C -0.143 4.143 20 C -0.074 4.074 21 C -0.104 4.104 22 C -0.057 4.057 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.021 4.021 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.267 0.733 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 2.001 8.354 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.173 4.173 4 C -0.013 4.013 5 N -0.671 5.671 6 C -0.421 4.421 7 H 0.108 0.892 8 C -0.166 4.166 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.195 1.195 14 S 2.730 3.270 15 O -0.962 6.962 16 O -0.987 6.987 17 C -0.731 4.731 18 C -0.041 4.041 19 C -0.162 4.162 20 C -0.093 4.093 21 C -0.105 4.105 22 C -0.075 4.075 23 C -0.201 4.201 24 C -0.201 4.201 25 C -0.040 4.040 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.844 1.919 8.786 14.872 hybrid contribution -0.934 0.606 -0.850 1.400 sum -12.778 2.525 7.936 15.252 Atomic orbital electron populations 1.21759 0.96750 1.00621 1.01416 1.21459 0.94876 0.97895 1.01784 1.22043 0.98333 0.95289 1.01613 1.21449 0.91035 0.83960 1.04819 1.52558 1.76456 1.20628 1.17473 1.19031 1.45313 0.93882 0.83902 0.89213 1.25265 0.95112 0.96817 0.99451 1.69972 1.33958 1.16881 1.28812 0.86191 0.79296 0.78684 0.82043 1.20302 1.20823 1.19496 1.04618 0.73941 0.73919 0.74551 1.93438 1.59667 1.59465 1.83634 1.93411 1.82840 1.55926 1.66497 1.31512 1.23897 1.06265 1.11396 1.20942 0.95571 0.92644 0.94951 1.21205 0.95492 1.00183 0.99289 1.21100 0.98315 0.93899 0.95945 1.19891 0.96197 0.94867 0.99544 1.20117 0.94604 0.99024 0.93765 1.21857 0.95370 1.01918 1.00923 1.21865 1.01935 1.00268 0.96035 1.20789 0.91711 0.99068 0.92438 0.93240 0.93009 0.93485 0.91973 0.92444 0.93606 0.91473 0.86528 0.92350 0.92305 0.84486 0.85686 0.86128 0.90187 0.92240 0.92642 0.92475 0.92618 0.92428 0.92452 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.48 5.50 -26.74 -0.15 -2.63 16 4 C 0.11 2.55 5.29 -4.04 -0.02 2.53 16 5 N -0.84 -20.33 2.85 -59.91 -0.17 -20.50 16 6 C -0.29 -7.32 8.87 -15.06 -0.13 -7.46 16 7 H 0.09 2.24 7.94 -52.48 -0.42 1.82 16 8 C 0.04 1.04 4.98 -17.43 -0.09 0.95 16 9 N -0.86 -22.67 11.27 55.49 0.63 -22.04 16 10 Si 0.91 19.79 29.62 -169.99 -5.03 14.76 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 S 2.63 61.45 5.65 -107.50 -0.61 60.85 16 15 O -0.97 -25.28 16.50 -57.17 -0.94 -26.22 16 16 O -1.00 -24.44 15.83 -57.17 -0.90 -25.35 16 17 C -0.65 -12.50 5.97 -39.58 -0.24 -12.74 16 18 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 19 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 20 C -0.07 -0.98 8.71 -39.59 -0.34 -1.33 16 21 C -0.10 -1.47 4.78 -104.62 -0.50 -1.97 16 22 C -0.06 -0.63 3.09 -91.77 -0.28 -0.92 16 23 C -0.14 -1.40 9.00 37.16 0.33 -1.06 16 24 C -0.14 -1.37 9.01 37.16 0.33 -1.04 16 25 C -0.02 -0.36 8.15 -39.58 -0.32 -0.68 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.81 7.12 -51.93 -0.37 0.44 16 32 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.12 2.83 5.31 -51.93 -0.28 2.56 16 34 H 0.06 1.28 6.90 -51.93 -0.36 0.93 16 35 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.14 2.39 7.62 -52.49 -0.40 1.99 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.12 1.24 7.10 -52.48 -0.37 0.87 16 39 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.50 7.37 -51.93 -0.38 0.12 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.49 7.41 -51.93 -0.38 0.11 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.13 2.22 7.51 -52.49 -0.39 1.83 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -30.44 381.75 -10.80 -41.24 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.55 Total: 4.70 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -1.97 Total: -33.19 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.45 Total: -42.54 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -1.85 Total: -51.57 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: 61.45 SS G_CDS: -0.61 Total: 60.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.44 -10.80 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195141139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.637 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds