Wall clock time and date at job start Tue Mar 31 2020 15:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47376 * 2 1 4 4 C 1.52993 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47281 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00042 * 275.97169 * 5 4 3 7 7 H 1.08004 * 120.00329 * 146.59795 * 6 5 4 8 8 C 1.38814 * 119.99798 * 326.59073 * 6 5 4 9 9 N 1.31621 * 120.00164 * 336.11374 * 8 6 5 10 10 Si 1.86803 * 119.99723 * 156.11292 * 8 6 5 11 11 H 1.48497 * 109.47247 * 90.00227 * 10 8 6 12 12 H 1.48504 * 109.46978 * 210.00183 * 10 8 6 13 13 H 1.48495 * 109.47407 * 329.99924 * 10 8 6 14 14 S 1.65601 * 119.99675 * 95.97004 * 5 4 3 15 15 O 1.42097 * 106.39896 * 156.46114 * 14 5 4 16 16 O 1.42096 * 106.40515 * 23.53807 * 14 5 4 17 17 C 1.76205 * 107.21684 * 269.99674 * 14 5 4 18 18 C 1.38255 * 120.00056 * 269.98241 * 17 14 5 19 19 C 1.38218 * 119.99571 * 180.02562 * 18 17 14 20 20 C 1.38251 * 119.99997 * 359.80938 * 19 18 17 21 21 C 1.38211 * 120.00350 * 0.44640 * 20 19 18 22 22 C 1.50700 * 120.00267 * 179.78969 * 21 20 19 23 23 C 1.52997 * 109.47373 * 59.72306 * 22 21 20 24 24 C 1.53001 * 109.46679 * 299.71992 * 22 21 20 25 25 C 1.38214 * 119.99518 * 90.00300 * 17 14 5 26 26 H 1.09006 * 109.46860 * 299.99569 * 1 2 3 27 27 H 1.08995 * 109.47437 * 59.99295 * 1 2 3 28 28 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46860 * 240.00431 * 2 1 3 30 30 H 1.08995 * 109.47437 * 120.00705 * 2 1 3 31 31 H 1.09006 * 109.46774 * 60.00378 * 3 2 1 32 32 H 1.09007 * 109.47094 * 300.00865 * 3 2 1 33 33 H 1.08999 * 109.47530 * 60.00303 * 4 3 2 34 34 H 1.08999 * 109.47208 * 300.00026 * 4 3 2 35 35 H 0.96997 * 119.99446 * 180.02562 * 9 8 6 36 36 H 1.07994 * 120.00020 * 359.97438 * 18 17 14 37 37 H 1.08002 * 119.99543 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.99746 * 180.23110 * 20 19 18 39 39 H 1.09000 * 109.47267 * 179.72711 * 22 21 20 40 40 H 1.09001 * 109.47049 * 59.99800 * 23 22 21 41 41 H 1.09003 * 109.46817 * 300.00160 * 23 22 21 42 42 H 1.08995 * 109.47157 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47386 * 60.00559 * 24 22 21 44 44 H 1.09004 * 109.47025 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.47544 * 299.99902 * 24 22 21 46 46 H 1.07998 * 120.00417 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1698 3.5110 -1.1791 7 1 3.9948 4.5766 -1.2017 8 6 4.5078 2.8383 -2.3453 9 7 5.1638 1.6990 -2.2814 10 14 4.0316 3.5500 -4.0055 11 1 5.1192 4.4346 -4.4952 12 1 3.8178 2.4454 -4.9747 13 1 2.7792 4.3357 -3.8665 14 16 4.4756 3.5537 1.4267 15 8 5.3864 4.5926 1.0944 16 8 4.7879 2.5077 2.3363 17 6 3.0289 4.3416 2.0520 18 6 2.7483 5.6495 1.7027 19 6 1.6137 6.2677 2.1937 20 6 0.7575 5.5767 3.0309 21 6 1.0407 4.2709 3.3843 22 6 0.1099 3.5194 4.3006 23 6 -1.2796 3.4426 3.6649 24 6 0.0172 4.2481 5.6427 25 6 2.1749 3.6521 2.8920 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 5.4002 1.2292 -3.0964 36 1 3.4160 6.1885 1.0470 37 1 1.3947 7.2895 1.9212 38 1 -0.1311 6.0586 3.4115 39 1 0.4926 2.5114 4.4603 40 1 -1.2135 2.9234 2.7087 41 1 -1.6624 4.4506 3.5052 42 1 -1.9530 2.8994 4.3278 43 1 -0.3656 5.2562 5.4832 44 1 -0.6565 3.7048 6.3054 45 1 1.0071 4.3028 6.0957 46 1 2.3940 2.6304 3.1647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195141139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:05 Heat of formation + Delta-G solvation = -85.759935 kcal Electronic energy + Delta-G solvation = -27078.922947 eV Core-core repulsion = 23480.125165 eV Total energy + Delta-G solvation = -3598.797782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.55276 -38.19112 -37.93757 -36.62658 -36.32039 -35.29967 -33.16412 -32.18734 -30.81348 -29.65552 -27.94771 -26.47113 -24.70875 -23.95943 -23.71058 -21.87933 -21.50728 -20.17295 -18.96733 -18.35416 -18.15737 -16.96565 -16.94281 -16.45365 -16.16635 -15.93916 -15.59879 -15.15582 -14.78665 -14.70437 -14.62108 -14.58196 -13.99470 -13.73547 -13.48253 -13.22101 -13.17358 -13.08547 -13.05273 -13.00185 -12.92879 -12.87693 -12.79673 -12.59667 -12.17488 -12.06469 -12.03691 -11.88580 -11.81716 -11.65553 -11.59389 -11.40074 -11.28684 -10.88941 -10.25064 -9.77714 -9.57790 -8.17651 -5.91908 -0.32839 -0.05897 0.32377 1.47843 1.49680 1.61317 2.28549 2.50514 2.74036 2.92487 3.19296 3.45911 3.76264 3.87755 4.00189 4.13224 4.16247 4.21092 4.28726 4.32842 4.38499 4.48876 4.50687 4.53980 4.73797 4.84991 4.89312 4.92749 4.95160 5.00675 5.01326 5.02037 5.07081 5.15851 5.22536 5.26205 5.26528 5.35075 5.37049 5.42559 5.47001 5.54060 5.55885 5.67213 5.92816 5.95762 6.50691 7.08189 7.45497 8.83923 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.005305 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.174462 B = 5276.889426 C = 6074.591834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.121 4.121 4 C 0.112 3.888 5 N -0.851 5.851 6 C -0.305 4.305 7 H 0.088 0.912 8 C -0.001 4.001 9 N -0.889 5.889 10 Si 0.974 3.026 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.259 1.259 14 S 2.631 3.369 15 O -1.012 7.012 16 O -1.022 7.022 17 C -0.657 4.657 18 C -0.046 4.046 19 C -0.133 4.133 20 C -0.061 4.061 21 C -0.096 4.096 22 C -0.058 4.058 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.039 4.039 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.704 3.189 9.249 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.014 4.014 5 N -0.682 5.682 6 C -0.440 4.440 7 H 0.106 0.894 8 C -0.206 4.206 9 N -0.530 5.530 10 Si 0.797 3.203 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.183 1.183 14 S 2.734 3.266 15 O -1.002 7.002 16 O -1.012 7.012 17 C -0.747 4.747 18 C -0.066 4.066 19 C -0.152 4.152 20 C -0.079 4.079 21 C -0.097 4.097 22 C -0.077 4.077 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.058 4.058 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.757 3.068 9.657 18.734 hybrid contribution 0.255 0.279 -0.980 1.050 sum -15.502 3.347 8.677 18.078 Atomic orbital electron populations 1.21705 0.94235 1.02158 1.01827 1.21456 0.97039 0.95524 1.01838 1.21904 0.95391 0.97489 1.01277 1.21467 0.93608 0.83061 1.03289 1.52642 1.76905 1.21243 1.17441 1.19254 1.45839 0.94105 0.84826 0.89423 1.26087 0.94734 0.97160 1.02579 1.70077 1.34949 1.18171 1.29764 0.85247 0.79160 0.78101 0.77769 1.20420 1.20178 1.18299 1.04084 0.74982 0.73334 0.74175 1.93373 1.62455 1.60183 1.84220 1.93362 1.84175 1.56967 1.66716 1.30663 1.22869 1.07266 1.13861 1.21057 0.97312 0.92171 0.96053 1.21598 0.93728 1.01679 0.98158 1.21614 0.98938 0.93161 0.94139 1.20280 0.95106 0.95530 0.98803 1.20218 0.94735 0.98625 0.94112 1.21850 0.94462 1.02888 1.00595 1.21864 1.01901 1.01074 0.95055 1.20875 0.92893 0.99091 0.92986 0.92362 0.93060 0.91401 0.92586 0.91826 0.92857 0.92697 0.88610 0.93150 0.92109 0.85533 0.82048 0.81786 0.90710 0.93424 0.91370 0.90611 0.91261 0.90571 0.93610 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.12 -3.71 5.93 30.59 0.18 -3.52 16 3 C -0.12 -4.61 5.50 30.59 0.17 -4.44 16 4 C 0.11 5.28 5.29 86.38 0.46 5.73 16 5 N -0.85 -43.36 2.85 -343.45 -0.98 -44.34 16 6 C -0.31 -16.30 8.87 84.04 0.75 -15.55 16 7 H 0.09 4.58 7.94 -2.91 -0.02 4.56 16 8 C 0.00 -0.07 4.98 84.86 0.42 0.35 16 9 N -0.89 -48.90 11.27 21.65 0.24 -48.66 16 10 Si 0.97 41.18 29.62 68.60 2.03 43.22 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 14 S 2.63 129.99 5.65 -56.49 -0.32 129.67 16 15 O -1.01 -55.96 16.50 -128.00 -2.11 -58.07 16 16 O -1.02 -53.18 15.83 -128.00 -2.03 -55.21 16 17 C -0.66 -25.95 5.97 22.27 0.13 -25.82 16 18 C -0.05 -1.63 9.52 22.27 0.21 -1.41 16 19 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 20 C -0.06 -1.34 8.71 22.27 0.19 -1.15 16 21 C -0.10 -2.47 4.78 -19.87 -0.09 -2.57 16 22 C -0.06 -1.11 3.09 -11.54 -0.04 -1.15 16 23 C -0.14 -2.15 9.00 71.98 0.65 -1.50 16 24 C -0.14 -2.14 9.01 71.98 0.65 -1.49 16 25 C -0.04 -1.33 8.15 22.27 0.18 -1.15 16 26 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.92 7.12 -2.38 -0.02 1.90 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.10 4.93 5.31 -2.39 -0.01 4.92 16 34 H 0.05 2.37 6.90 -2.39 -0.02 2.35 16 35 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.13 4.58 7.62 -2.91 -0.02 4.56 16 37 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.16 2.28 7.10 -2.91 -0.02 2.26 16 39 H 0.07 1.51 7.88 -2.39 -0.02 1.49 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.87 7.37 -2.39 -0.02 0.86 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.87 7.41 -2.39 -0.02 0.85 16 44 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 45 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.13 4.35 7.51 -2.91 -0.02 4.32 16 Total: -1.00 -69.82 381.75 2.58 -67.23 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.94 Total: 25.72 kcal Atomic # 6 Polarization: -64.36 SS G_CDS: 4.80 Total: -59.56 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -0.73 Total: -93.00 kcal Atomic # 8 Polarization: -109.14 SS G_CDS: -4.14 Total: -113.28 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 129.99 SS G_CDS: -0.32 Total: 129.67 kcal Total: -69.82 2.58 -67.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195141139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.527 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds