Wall clock time and date at job start Tue Mar 31 2020 14:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 113.00111 * 2 1 4 4 C 1.38296 * 119.91915 * 281.97132 * 3 2 1 5 5 C 1.38096 * 120.07444 * 179.97438 * 4 3 2 6 6 C 1.38936 * 119.92178 * 359.97438 * 5 4 3 7 7 N 1.39682 * 120.07468 * 179.97438 * 6 5 4 8 8 C 1.39785 * 120.00195 * 40.80901 * 7 6 5 9 9 C 1.38781 * 120.10355 * 7.92429 * 8 7 6 10 10 C 1.38188 * 119.98722 * 179.70327 * 9 8 7 11 11 C 1.38354 * 120.20672 * 0.57350 * 10 9 8 12 12 C 1.38171 * 120.21356 * 359.72512 * 11 10 9 13 13 C 1.38717 * 120.00789 * 359.97438 * 12 11 10 14 14 O 1.35787 * 120.10368 * 180.02562 * 13 12 11 15 15 C 1.34797 * 117.00158 * 353.64145 * 14 13 12 16 16 H 1.08004 * 119.99984 * 5.13963 * 15 14 13 17 17 C 1.38627 * 120.00353 * 185.13594 * 15 14 13 18 18 N 1.31581 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46895 * 90.00557 * 19 17 15 21 21 H 1.48500 * 109.46858 * 210.00134 * 19 17 15 22 22 H 1.48497 * 109.47132 * 330.00541 * 19 17 15 23 23 C 1.38941 * 119.84923 * 0.02562 * 6 5 4 24 24 C 1.38095 * 119.92160 * 359.97438 * 23 6 5 25 25 C 1.54035 * 113.92667 * 131.93170 * 2 1 3 26 26 O 1.44184 * 85.51659 * 91.65634 * 25 2 1 27 27 C 1.44177 * 93.33952 * 24.19592 * 26 25 2 28 28 H 1.09001 * 109.47381 * 59.99657 * 1 2 3 29 29 H 1.09003 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47073 * 299.99992 * 1 2 3 31 31 H 1.08002 * 119.96513 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.04191 * 179.72194 * 5 4 3 33 33 H 0.97005 * 119.99493 * 220.79841 * 7 6 5 34 34 H 1.08003 * 120.00441 * 359.97438 * 9 8 7 35 35 H 1.08007 * 119.89224 * 180.29524 * 10 9 8 36 36 H 1.08005 * 119.89060 * 179.74621 * 11 10 9 37 37 H 1.08002 * 119.99764 * 179.97438 * 12 11 10 38 38 H 0.96994 * 120.00093 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.04048 * 180.02562 * 23 6 5 40 40 H 1.07994 * 119.96229 * 180.02562 * 24 23 6 41 41 H 1.08998 * 113.86818 * 205.80460 * 25 2 1 42 42 H 1.08997 * 113.86564 * 337.51764 * 25 2 1 43 43 H 1.09004 * 113.86191 * 221.65989 * 27 26 25 44 44 H 1.08998 * 113.98594 * 89.96685 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1188 1.3872 0.0000 4 6 2.1595 2.1193 -1.1726 5 6 2.6979 3.3909 -1.1761 6 6 3.1986 3.9349 0.0002 7 7 3.7444 5.2206 0.0002 8 6 3.1307 6.2404 -0.7329 9 6 1.8949 6.0243 -1.3263 10 6 1.2877 7.0361 -2.0454 11 6 1.9132 8.2621 -2.1863 12 6 3.1465 8.4844 -1.6043 13 6 3.7613 7.4770 -0.8753 14 8 4.9730 7.6936 -0.3021 15 6 5.5852 8.8602 -0.5871 16 1 5.0755 9.6074 -1.1773 17 6 6.8690 9.1010 -0.1227 18 7 7.4902 8.1904 0.5959 19 14 7.7175 10.7174 -0.5184 20 1 7.4143 11.7088 0.5449 21 1 9.1850 10.5015 -0.5900 22 1 7.2278 11.2268 -1.8244 23 6 3.1561 3.1965 1.1765 24 6 2.6163 1.9254 1.1728 25 6 2.1547 -0.9409 1.0475 26 8 2.1470 -1.9297 -0.0019 27 6 2.1520 -0.9398 -1.0501 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7698 1.6960 -2.0866 32 1 2.7335 3.9605 -2.0931 33 1 4.5492 5.4058 0.5090 34 1 1.4059 5.0670 -1.2225 35 1 0.3237 6.8678 -2.5026 36 1 1.4358 9.0480 -2.7529 37 1 3.6318 9.4426 -1.7169 38 1 8.3886 8.3587 0.9205 39 1 3.5440 3.6164 2.0927 40 1 2.5826 1.3511 2.0867 41 1 3.1538 -0.6443 1.3666 42 1 1.4917 -1.1763 1.8799 43 1 1.4867 -1.1742 -1.8812 44 1 3.1493 -0.6416 -1.3732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:40 Heat of formation + Delta-G solvation = 21.089887 kcal Electronic energy + Delta-G solvation = -26481.134940 eV Core-core repulsion = 22751.526562 eV Total energy + Delta-G solvation = -3729.608377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12714 -39.74420 -38.55048 -36.53228 -35.06052 -32.54473 -32.23550 -31.00273 -29.41150 -29.11728 -27.37719 -26.83316 -26.06255 -25.40143 -22.70475 -22.59348 -21.25429 -20.91996 -19.14330 -18.02623 -17.47658 -17.30883 -16.61234 -16.15009 -16.08819 -15.66311 -14.70821 -14.59127 -14.50699 -14.10004 -13.92129 -13.79759 -13.63944 -13.47803 -13.24437 -13.09394 -12.88923 -12.51341 -12.38465 -12.26188 -11.98576 -11.70925 -11.55481 -11.34948 -10.99743 -10.96633 -10.74522 -10.64305 -10.53522 -10.43350 -10.18041 -9.83856 -9.46738 -8.87417 -8.78832 -8.38253 -7.61342 -6.53100 -6.48264 -4.04611 1.41297 1.52600 2.22956 2.37872 3.10113 3.11565 3.15989 3.49048 3.80481 3.86742 3.94479 3.97082 4.55953 4.58342 4.80517 4.94154 5.02884 5.04749 5.09201 5.15139 5.17737 5.26906 5.47638 5.49338 5.55067 5.59209 5.64358 5.74200 5.78308 5.82438 5.86829 5.93419 5.96821 6.03270 6.11303 6.19683 6.40573 6.54643 6.61328 6.66308 6.68360 6.84462 7.01989 7.12053 7.24738 7.37715 7.62256 7.91771 8.03714 8.22667 8.98092 9.65209 10.69773 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.002735 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.768665 B =10236.163002 C =11309.782946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.123 4.123 4 C -0.084 4.084 5 C -0.159 4.159 6 C 0.196 3.804 7 N -0.677 5.677 8 C 0.123 3.877 9 C -0.148 4.148 10 C -0.172 4.172 11 C -0.111 4.111 12 C -0.206 4.206 13 C 0.111 3.889 14 O -0.185 6.185 15 C -0.386 4.386 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.866 5.866 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.162 4.162 24 C -0.084 4.084 25 C 0.043 3.957 26 O -0.382 6.382 27 C 0.045 3.955 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.419 0.581 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.269 0.731 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 -12.922 -1.449 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.103 4.103 5 C -0.180 4.180 6 C 0.097 3.903 7 N -0.301 5.301 8 C 0.026 3.974 9 C -0.170 4.170 10 C -0.192 4.192 11 C -0.130 4.130 12 C -0.226 4.226 13 C 0.057 3.943 14 O -0.090 6.090 15 C -0.462 4.462 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.502 5.502 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.184 4.184 24 C -0.103 4.103 25 C -0.034 4.034 26 O -0.301 6.301 27 C -0.031 4.031 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.256 0.744 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.066 -13.352 -1.232 17.385 hybrid contribution 0.811 1.316 -0.029 1.546 sum -10.255 -12.036 -1.261 15.863 Atomic orbital electron populations 1.21565 0.91554 1.02175 1.02824 1.22496 0.97036 0.92237 0.96285 1.19405 1.03499 0.95413 0.94173 1.20654 0.98832 0.93492 0.97292 1.21155 1.03731 0.95680 0.97404 1.17768 0.94585 0.85107 0.92863 1.41973 1.30153 1.04941 1.52996 1.17002 0.93754 0.86487 1.00173 1.20592 0.93874 1.00208 1.02323 1.20424 1.00326 0.93962 1.04483 1.20669 0.95236 0.96698 1.00413 1.20966 0.97294 0.99980 1.04397 1.18911 0.88257 0.92153 0.94986 1.83859 1.25548 1.39006 1.60561 1.21254 0.97927 0.92072 1.34978 0.89171 1.25235 0.95477 0.99379 0.96419 1.70018 1.13404 1.33600 1.33163 0.85724 0.78581 0.80164 0.79046 1.19945 1.20315 1.19244 1.20973 1.04598 0.96008 0.96801 1.20658 0.97787 0.94698 0.97157 1.24132 1.00696 0.86307 0.92228 1.89653 1.95764 1.27625 1.17046 1.24108 1.00736 0.86145 0.92147 0.91704 0.91821 0.91740 0.86381 0.85225 0.74358 0.85924 0.87464 0.87526 0.85322 0.92102 0.85851 0.86346 0.89782 0.89190 0.89212 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.11 37.16 0.34 -0.68 16 2 C -0.08 -0.75 1.13 -154.58 -0.17 -0.92 16 3 C -0.12 -1.38 4.85 -104.58 -0.51 -1.89 16 4 C -0.08 -1.00 9.38 -39.61 -0.37 -1.38 16 5 C -0.16 -2.30 7.36 -39.37 -0.29 -2.59 16 6 C 0.20 3.16 5.90 -83.76 -0.49 2.66 16 7 N -0.68 -12.90 5.46 -8.28 -0.05 -12.95 16 8 C 0.12 2.53 6.44 -83.55 -0.54 2.00 16 9 C -0.15 -2.67 8.01 -39.40 -0.32 -2.98 16 10 C -0.17 -2.96 10.04 -39.56 -0.40 -3.35 16 11 C -0.11 -2.01 10.04 -39.56 -0.40 -2.41 16 12 C -0.21 -4.39 9.16 -39.43 -0.36 -4.75 16 13 C 0.11 2.60 6.66 -38.92 -0.26 2.34 16 14 O -0.18 -5.00 9.02 0.03 0.00 -5.00 16 15 C -0.39 -10.46 9.49 30.88 0.29 -10.17 16 16 H 0.09 2.28 5.21 -52.48 -0.27 2.01 16 17 C 0.04 1.03 5.49 -17.52 -0.10 0.94 16 18 N -0.87 -24.60 13.67 55.48 0.76 -23.84 16 19 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.16 -2.28 9.97 -39.37 -0.39 -2.68 16 24 C -0.08 -1.00 9.01 -39.61 -0.36 -1.35 16 25 C 0.04 0.40 7.40 37.61 0.28 0.68 16 26 O -0.38 -4.32 12.37 -35.23 -0.44 -4.76 16 27 C 0.05 0.43 8.00 37.61 0.30 0.73 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.12 1.16 8.02 -52.49 -0.42 0.74 16 32 H 0.13 1.96 6.59 -52.49 -0.35 1.62 16 33 H 0.42 8.52 8.22 -40.82 -0.34 8.19 16 34 H 0.12 1.99 5.33 -52.48 -0.28 1.71 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.13 2.74 5.65 -52.49 -0.30 2.44 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 1.13 7.07 -52.49 -0.37 0.76 16 41 H 0.08 0.75 7.43 -51.93 -0.39 0.37 16 42 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -29.76 363.52 -8.65 -38.40 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.64 Total: 13.30 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -3.74 Total: -25.82 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.71 Total: -36.79 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.44 Total: -9.76 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.76 -8.65 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.494 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds