Wall clock time and date at job start Tue Mar 31 2020 14:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 113.00111 * 2 1 4 4 C 1.38296 * 119.91915 * 281.97132 * 3 2 1 5 5 C 1.38096 * 120.07444 * 179.97438 * 4 3 2 6 6 C 1.38936 * 119.92178 * 359.97438 * 5 4 3 7 7 N 1.39682 * 120.07468 * 179.97438 * 6 5 4 8 8 C 1.39785 * 120.00195 * 40.80901 * 7 6 5 9 9 C 1.38781 * 120.10355 * 7.92429 * 8 7 6 10 10 C 1.38188 * 119.98722 * 179.70327 * 9 8 7 11 11 C 1.38354 * 120.20672 * 0.57350 * 10 9 8 12 12 C 1.38171 * 120.21356 * 359.72512 * 11 10 9 13 13 C 1.38717 * 120.00789 * 359.97438 * 12 11 10 14 14 O 1.35787 * 120.10368 * 180.02562 * 13 12 11 15 15 C 1.34797 * 117.00158 * 353.64145 * 14 13 12 16 16 H 1.08004 * 119.99984 * 5.13963 * 15 14 13 17 17 C 1.38627 * 120.00353 * 185.13594 * 15 14 13 18 18 N 1.31581 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46895 * 90.00557 * 19 17 15 21 21 H 1.48500 * 109.46858 * 210.00134 * 19 17 15 22 22 H 1.48497 * 109.47132 * 330.00541 * 19 17 15 23 23 C 1.38941 * 119.84923 * 0.02562 * 6 5 4 24 24 C 1.38095 * 119.92160 * 359.97438 * 23 6 5 25 25 C 1.54035 * 113.92667 * 131.93170 * 2 1 3 26 26 O 1.44184 * 85.51659 * 91.65634 * 25 2 1 27 27 C 1.44177 * 93.33952 * 24.19592 * 26 25 2 28 28 H 1.09001 * 109.47381 * 59.99657 * 1 2 3 29 29 H 1.09003 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47073 * 299.99992 * 1 2 3 31 31 H 1.08002 * 119.96513 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.04191 * 179.72194 * 5 4 3 33 33 H 0.97005 * 119.99493 * 220.79841 * 7 6 5 34 34 H 1.08003 * 120.00441 * 359.97438 * 9 8 7 35 35 H 1.08007 * 119.89224 * 180.29524 * 10 9 8 36 36 H 1.08005 * 119.89060 * 179.74621 * 11 10 9 37 37 H 1.08002 * 119.99764 * 179.97438 * 12 11 10 38 38 H 0.96994 * 120.00093 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.04048 * 180.02562 * 23 6 5 40 40 H 1.07994 * 119.96229 * 180.02562 * 24 23 6 41 41 H 1.08998 * 113.86818 * 205.80460 * 25 2 1 42 42 H 1.08997 * 113.86564 * 337.51764 * 25 2 1 43 43 H 1.09004 * 113.86191 * 221.65989 * 27 26 25 44 44 H 1.08998 * 113.98594 * 89.96685 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1188 1.3872 0.0000 4 6 2.1595 2.1193 -1.1726 5 6 2.6979 3.3909 -1.1761 6 6 3.1986 3.9349 0.0002 7 7 3.7444 5.2206 0.0002 8 6 3.1307 6.2404 -0.7329 9 6 1.8949 6.0243 -1.3263 10 6 1.2877 7.0361 -2.0454 11 6 1.9132 8.2621 -2.1863 12 6 3.1465 8.4844 -1.6043 13 6 3.7613 7.4770 -0.8753 14 8 4.9730 7.6936 -0.3021 15 6 5.5852 8.8602 -0.5871 16 1 5.0755 9.6074 -1.1773 17 6 6.8690 9.1010 -0.1227 18 7 7.4902 8.1904 0.5959 19 14 7.7175 10.7174 -0.5184 20 1 7.4143 11.7088 0.5449 21 1 9.1850 10.5015 -0.5900 22 1 7.2278 11.2268 -1.8244 23 6 3.1561 3.1965 1.1765 24 6 2.6163 1.9254 1.1728 25 6 2.1547 -0.9409 1.0475 26 8 2.1470 -1.9297 -0.0019 27 6 2.1520 -0.9398 -1.0501 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7698 1.6960 -2.0866 32 1 2.7335 3.9605 -2.0931 33 1 4.5492 5.4058 0.5090 34 1 1.4059 5.0670 -1.2225 35 1 0.3237 6.8678 -2.5026 36 1 1.4358 9.0480 -2.7529 37 1 3.6318 9.4426 -1.7169 38 1 8.3886 8.3587 0.9205 39 1 3.5440 3.6164 2.0927 40 1 2.5826 1.3511 2.0867 41 1 3.1538 -0.6443 1.3666 42 1 1.4917 -1.1763 1.8799 43 1 1.4867 -1.1742 -1.8812 44 1 3.1493 -0.6416 -1.3732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:39 Heat of formation + Delta-G solvation = 4.382852 kcal Electronic energy + Delta-G solvation = -26481.859411 eV Core-core repulsion = 22751.526562 eV Total energy + Delta-G solvation = -3730.332849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96274 -41.15760 -39.86409 -38.12779 -36.35315 -34.26444 -33.40426 -32.08472 -30.76022 -30.54345 -28.58013 -27.57546 -27.30745 -26.86154 -23.96694 -23.76862 -22.69628 -22.27989 -19.99378 -19.78820 -19.08958 -18.43464 -17.67361 -17.40042 -16.87312 -16.79440 -16.32146 -15.99226 -15.77977 -15.49054 -15.32443 -15.27094 -14.91666 -14.40642 -14.30610 -14.29100 -14.00552 -13.86453 -13.54786 -13.35312 -13.20884 -12.90420 -12.80168 -12.58763 -12.53192 -12.26112 -12.24171 -12.10436 -11.55590 -11.43069 -11.38246 -11.19831 -10.78623 -10.61556 -9.84446 -9.64171 -9.18081 -8.45051 -8.01946 -6.07993 0.25172 0.47117 0.68145 0.91653 1.34674 1.43012 1.50980 2.16570 2.45505 2.69577 2.84943 2.91700 3.18297 3.21886 3.45899 3.74570 4.01659 4.07325 4.08802 4.14282 4.27489 4.31720 4.45307 4.48165 4.50107 4.61003 4.63507 4.65460 4.71550 4.87421 4.93236 4.96547 5.03731 5.08090 5.11819 5.12924 5.15888 5.21634 5.32806 5.40681 5.45322 5.53636 5.65150 5.66102 5.82405 5.94041 6.01773 6.16190 6.56812 6.73320 7.01066 7.81290 8.77862 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.002735 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.768665 B =10236.163002 C =11309.782946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.109 4.109 4 C -0.078 4.078 5 C -0.165 4.165 6 C 0.164 3.836 7 N -0.688 5.688 8 C 0.121 3.879 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.117 4.117 12 C -0.213 4.213 13 C 0.062 3.938 14 O -0.230 6.230 15 C -0.405 4.405 16 H 0.098 0.902 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.013 2.987 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.255 1.255 23 C -0.170 4.170 24 C -0.081 4.081 25 C 0.040 3.960 26 O -0.403 6.403 27 C 0.043 3.957 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.404 0.596 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 -14.167 -2.761 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.110 4.110 4 C -0.096 4.096 5 C -0.186 4.186 6 C 0.067 3.933 7 N -0.311 5.311 8 C 0.022 3.978 9 C -0.171 4.171 10 C -0.166 4.166 11 C -0.136 4.136 12 C -0.233 4.233 13 C 0.011 3.989 14 O -0.137 6.137 15 C -0.481 4.481 16 H 0.115 0.885 17 C -0.219 4.219 18 N -0.559 5.559 19 Si 0.834 3.166 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.191 4.191 24 C -0.100 4.100 25 C -0.037 4.037 26 O -0.323 6.323 27 C -0.033 4.033 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.240 0.760 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.066 -14.643 -2.566 20.466 hybrid contribution 1.422 1.427 0.323 2.040 sum -12.644 -13.216 -2.243 18.427 Atomic orbital electron populations 1.21570 0.90250 1.02797 1.03293 1.22521 0.97875 0.90551 0.96610 1.19695 1.01719 0.96088 0.93535 1.20919 0.97749 0.92287 0.98675 1.21153 1.04290 0.96772 0.96397 1.18050 0.96507 0.84373 0.94362 1.42033 1.29997 1.06067 1.53009 1.17362 0.94440 0.86109 0.99844 1.20931 0.92824 1.01566 1.01762 1.20991 1.01176 0.92629 1.01824 1.21034 0.94003 0.98328 1.00242 1.21143 0.98629 0.99221 1.04327 1.19448 0.88083 0.94222 0.97174 1.83829 1.27536 1.39334 1.63013 1.21709 0.98606 0.92674 1.35154 0.88505 1.26431 0.95949 1.03305 0.96222 1.70164 1.13939 1.36192 1.35569 0.84648 0.77210 0.75389 0.79390 1.19006 1.19848 1.17892 1.21094 1.04911 0.96895 0.96237 1.20938 0.96649 0.93763 0.98615 1.24286 1.01168 0.85730 0.92466 1.89644 1.95850 1.28727 1.18056 1.24235 1.01048 0.85603 0.92427 0.91058 0.91153 0.91505 0.83673 0.86079 0.76046 0.83798 0.83080 0.84022 0.86263 0.92110 0.86186 0.83849 0.89778 0.87508 0.87414 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.11 71.98 0.66 -0.89 16 2 C -0.08 -1.16 1.13 -52.23 -0.06 -1.22 16 3 C -0.11 -2.15 4.85 -19.84 -0.10 -2.24 16 4 C -0.08 -1.66 9.38 22.25 0.21 -1.45 16 5 C -0.17 -4.62 7.36 22.40 0.16 -4.46 16 6 C 0.16 5.35 5.90 38.23 0.23 5.58 16 7 N -0.69 -27.77 5.46 -180.11 -0.98 -28.75 16 8 C 0.12 5.12 6.44 38.32 0.25 5.36 16 9 C -0.15 -5.15 8.01 22.39 0.18 -4.97 16 10 C -0.15 -4.56 10.04 22.29 0.22 -4.34 16 11 C -0.12 -3.99 10.04 22.28 0.22 -3.77 16 12 C -0.21 -9.26 9.16 22.37 0.20 -9.06 16 13 C 0.06 3.06 6.66 22.70 0.15 3.21 16 14 O -0.23 -13.36 9.02 -22.82 -0.21 -13.57 16 15 C -0.41 -23.28 9.49 67.91 0.64 -22.63 16 16 H 0.10 5.16 5.21 -2.91 -0.02 5.15 16 17 C -0.02 -1.23 5.49 84.82 0.47 -0.77 16 18 N -0.92 -55.52 13.67 21.61 0.30 -55.23 16 19 Si 1.01 42.90 29.55 68.60 2.03 44.93 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.17 -4.78 9.97 22.40 0.22 -4.56 16 24 C -0.08 -1.76 9.01 22.25 0.20 -1.56 16 25 C 0.04 0.62 7.40 72.27 0.54 1.16 16 26 O -0.40 -8.10 12.37 -148.98 -1.84 -9.94 16 27 C 0.04 0.69 8.00 72.28 0.58 1.26 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.83 8.09 -2.39 -0.02 0.82 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.15 2.30 8.02 -2.91 -0.02 2.27 16 32 H 0.12 3.56 6.59 -2.91 -0.02 3.54 16 33 H 0.40 18.12 8.22 -92.70 -0.76 17.35 16 34 H 0.14 4.34 5.33 -2.91 -0.02 4.32 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.12 5.27 5.65 -2.91 -0.02 5.25 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 40 H 0.14 2.37 7.07 -2.91 -0.02 2.35 16 41 H 0.08 1.31 7.43 -2.39 -0.02 1.29 16 42 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 43 H 0.11 1.31 8.10 -2.38 -0.02 1.29 16 44 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 Total: -1.00 -69.67 363.52 4.54 -65.13 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: 0.27 Total: 42.78 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 4.98 Total: -45.35 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -0.69 Total: -83.98 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -2.05 Total: -23.51 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.67 4.54 -65.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.518 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds