Wall clock time and date at job start Tue Mar 31 2020 14:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 112.99938 * 2 1 4 4 C 1.38294 * 119.92395 * 66.83541 * 3 2 1 5 5 C 1.38093 * 120.07793 * 179.97438 * 4 3 2 6 6 C 1.38939 * 119.92172 * 0.02562 * 5 4 3 7 7 N 1.39684 * 120.07857 * 179.97438 * 6 5 4 8 8 C 1.39796 * 120.00111 * 154.04722 * 7 6 5 9 9 C 1.38973 * 120.00362 * 149.37138 * 8 7 6 10 10 C 1.37994 * 119.99075 * 180.02562 * 9 8 7 11 11 C 1.38907 * 120.00582 * 0.02562 * 10 9 8 12 12 O 1.35795 * 119.99298 * 179.97438 * 11 10 9 13 13 C 1.34812 * 116.99525 * 353.15893 * 12 11 10 14 14 H 1.08005 * 120.00458 * 5.33918 * 13 12 11 15 15 C 1.38619 * 119.99905 * 185.34480 * 13 12 11 16 16 N 1.31581 * 119.99600 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00111 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47232 * 89.99631 * 17 15 13 19 19 H 1.48501 * 109.46923 * 209.99646 * 17 15 13 20 20 H 1.48495 * 109.47098 * 329.99483 * 17 15 13 21 21 C 1.38911 * 120.01805 * 0.24790 * 11 10 9 22 22 C 1.37995 * 120.00372 * 359.45282 * 21 11 10 23 23 C 1.38936 * 119.84726 * 0.25425 * 6 5 4 24 24 C 1.38097 * 119.92138 * 359.49155 * 23 6 5 25 25 C 1.54042 * 113.81155 * 131.82400 * 2 1 3 26 26 O 1.44448 * 85.42377 * 91.81195 * 25 2 1 27 27 C 1.44173 * 93.37903 * 24.08754 * 26 25 2 28 28 H 1.08999 * 109.46778 * 60.00418 * 1 2 3 29 29 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47281 * 300.00290 * 1 2 3 31 31 H 1.07999 * 119.96293 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.04247 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99826 * 334.05229 * 7 6 5 34 34 H 1.07998 * 120.00271 * 0.04319 * 9 8 7 35 35 H 1.07997 * 119.99470 * 179.97438 * 10 9 8 36 36 H 0.97006 * 120.00073 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.99748 * 179.72882 * 21 11 10 38 38 H 1.08003 * 120.00164 * 180.24642 * 22 21 11 39 39 H 1.08001 * 120.03808 * 179.74971 * 23 6 5 40 40 H 1.08000 * 119.96283 * 180.23067 * 24 23 6 41 41 H 1.09001 * 113.86110 * 205.91372 * 25 2 1 42 42 H 1.08992 * 113.86682 * 337.61868 * 25 2 1 43 43 H 1.08998 * 113.86010 * 221.76810 * 27 26 25 44 44 H 1.09004 * 113.98382 * 90.07965 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1188 1.3872 0.0000 4 6 1.9544 2.2064 1.1019 5 6 2.4930 3.4780 1.1056 6 6 3.2004 3.9341 0.0002 7 7 3.7462 5.2199 0.0001 8 6 4.8619 5.5057 -0.7923 9 6 5.0372 6.7830 -1.3109 10 6 6.1383 7.0647 -2.0935 11 6 7.0711 6.0714 -2.3634 12 8 8.1543 6.3487 -3.1340 13 6 8.1931 7.5616 -3.7213 14 1 7.4299 8.2932 -3.5006 15 6 9.2127 7.8697 -4.6085 16 7 10.1427 6.9785 -4.8770 17 14 9.2662 9.5499 -5.4228 18 1 10.0544 10.4840 -4.5793 19 1 9.9031 9.4323 -6.7591 20 1 7.8836 10.0693 -5.5774 21 6 6.8933 4.7930 -1.8498 22 6 5.7956 4.5123 -1.0621 23 6 3.3588 3.1105 -1.1075 24 6 2.8219 1.8382 -1.1022 25 6 2.1519 -0.9398 1.0502 26 8 2.1470 -1.9297 -0.0018 27 6 2.1521 -0.9398 -1.0499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.4040 1.8514 1.9607 32 1 2.3646 4.1172 1.9666 33 1 3.3511 5.9145 0.5500 34 1 4.3118 7.5552 -1.1012 35 1 6.2743 8.0572 -2.4969 36 1 10.8564 7.1941 -5.4976 37 1 7.6165 4.0199 -2.0635 38 1 5.6595 3.5194 -0.6595 39 1 3.9046 3.4634 -1.9700 40 1 2.9478 1.1960 -1.9614 41 1 3.1502 -0.6428 1.3716 42 1 1.4868 -1.1741 1.8812 43 1 1.4870 -1.1743 -1.8810 44 1 3.1495 -0.6416 -1.3730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212613148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:44 Heat of formation + Delta-G solvation = 19.618898 kcal Electronic energy + Delta-G solvation = -25958.999932 eV Core-core repulsion = 22229.327768 eV Total energy + Delta-G solvation = -3729.672164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16356 -39.72498 -38.66904 -36.97021 -34.71171 -32.56139 -32.10430 -31.10976 -30.34065 -28.91337 -27.33681 -26.84343 -26.13815 -25.20005 -22.96858 -22.42292 -21.76325 -20.79771 -19.19399 -18.15199 -17.53287 -17.19565 -16.86288 -16.28853 -16.12252 -15.93103 -14.70856 -14.59148 -14.54533 -14.19589 -13.87947 -13.75765 -13.68023 -13.42289 -13.30577 -13.05798 -12.83502 -12.71276 -12.57136 -12.30583 -12.05068 -11.80677 -11.61477 -11.51903 -11.34131 -11.06731 -10.74732 -10.68695 -10.58473 -10.46453 -10.10094 -9.83598 -9.37536 -8.93198 -8.85571 -8.31880 -7.96989 -6.61882 -6.46334 -4.04291 1.36734 1.42125 2.07060 2.34429 3.10762 3.12001 3.16690 3.45128 3.57571 3.76211 3.94760 3.95578 4.50712 4.51529 4.74197 4.87411 4.92190 4.98745 5.06107 5.13525 5.23053 5.25919 5.36783 5.40410 5.48120 5.50128 5.58878 5.61472 5.63443 5.74768 5.81408 5.88787 5.90454 5.99183 6.09549 6.14267 6.30619 6.39571 6.47996 6.60627 6.73178 6.76435 6.94130 7.00342 7.18732 7.30804 7.48947 7.81348 7.96484 7.97763 8.98911 9.68993 10.71441 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.002234 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.553215 B =12531.063980 C =13215.398896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.133 4.133 4 C -0.074 4.074 5 C -0.183 4.183 6 C 0.205 3.795 7 N -0.682 5.682 8 C 0.068 3.932 9 C -0.106 4.106 10 C -0.208 4.208 11 C 0.136 3.864 12 O -0.179 6.179 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.165 4.165 22 C -0.107 4.107 23 C -0.169 4.169 24 C -0.077 4.077 25 C 0.046 3.954 26 O -0.382 6.382 27 C 0.041 3.959 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.401 0.599 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.864 -9.560 10.561 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.080 4.080 3 C -0.135 4.135 4 C -0.092 4.092 5 C -0.205 4.205 6 C 0.104 3.896 7 N -0.304 5.304 8 C -0.026 4.026 9 C -0.127 4.127 10 C -0.228 4.228 11 C 0.082 3.918 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.108 0.892 15 C -0.166 4.166 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.185 4.185 22 C -0.127 4.127 23 C -0.191 4.191 24 C -0.096 4.096 25 C -0.031 4.031 26 O -0.301 6.301 27 C -0.036 4.036 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.236 0.764 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.340 -10.003 10.253 22.491 hybrid contribution -0.100 1.513 -0.158 1.525 sum -17.440 -8.489 10.094 21.866 Atomic orbital electron populations 1.21566 0.91664 1.02219 1.02663 1.22470 0.96965 0.92280 0.96284 1.19361 1.02986 0.95383 0.95775 1.20558 0.98318 0.92939 0.97411 1.20676 1.05424 0.97110 0.97318 1.17826 0.93004 0.85812 0.92935 1.41913 1.30900 1.09078 1.48491 1.17251 0.89386 0.94956 1.00996 1.20461 0.98410 0.95198 0.98591 1.21004 0.96623 1.00559 1.04571 1.19349 0.87642 0.92784 0.92023 1.83990 1.34270 1.35451 1.54506 1.21288 1.12542 0.88929 1.23975 0.89167 1.25275 0.95150 0.99672 0.96460 1.70047 1.12359 1.34037 1.33326 0.85724 0.78879 0.80269 0.78627 1.19903 1.20248 1.19236 1.20080 0.99677 0.95072 1.03692 1.20498 0.93387 0.98434 1.00401 1.21042 1.05022 0.95034 0.97963 1.20788 0.96238 0.95200 0.97380 1.24146 1.00685 0.86174 0.92084 1.89697 1.95798 1.27596 1.17014 1.24155 1.00877 0.86278 0.92253 0.91746 0.91800 0.91856 0.86525 0.86298 0.76352 0.87258 0.85186 0.92024 0.86130 0.86527 0.85115 0.86169 0.89882 0.89260 0.89141 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.00 37.16 0.33 -0.58 16 2 C -0.08 -0.69 1.13 -154.58 -0.18 -0.86 16 3 C -0.13 -1.34 4.89 -104.58 -0.51 -1.85 16 4 C -0.07 -0.72 9.45 -39.61 -0.37 -1.10 16 5 C -0.18 -1.99 9.94 -39.38 -0.39 -2.38 16 6 C 0.21 2.65 6.04 -83.76 -0.51 2.14 16 7 N -0.68 -9.15 5.47 -8.37 -0.05 -9.19 16 8 C 0.07 1.13 5.95 -83.68 -0.50 0.63 16 9 C -0.11 -1.85 9.95 -39.40 -0.39 -2.24 16 10 C -0.21 -4.32 9.16 -39.42 -0.36 -4.69 16 11 C 0.14 3.18 6.64 -39.08 -0.26 2.92 16 12 O -0.18 -4.99 9.76 -0.04 0.00 -4.99 16 13 C -0.39 -10.72 9.48 30.87 0.29 -10.43 16 14 H 0.09 2.27 5.21 -52.48 -0.27 2.00 16 15 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 16 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 17 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.17 -3.39 9.98 -39.42 -0.39 -3.78 16 22 C -0.11 -1.87 7.74 -39.40 -0.30 -2.18 16 23 C -0.17 -2.23 7.83 -39.37 -0.31 -2.54 16 24 C -0.08 -0.87 9.04 -39.61 -0.36 -1.23 16 25 C 0.05 0.40 8.26 37.64 0.31 0.71 16 26 O -0.38 -4.21 12.38 -35.23 -0.44 -4.65 16 27 C 0.04 0.37 7.51 37.64 0.28 0.65 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.40 4.48 8.89 -40.82 -0.36 4.11 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.13 2.71 5.65 -52.49 -0.30 2.41 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.12 1.87 6.51 -52.48 -0.34 1.53 16 39 H 0.13 1.92 6.33 -52.49 -0.33 1.59 16 40 H 0.12 1.17 6.44 -52.49 -0.34 0.83 16 41 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.09 0.70 8.10 -51.93 -0.42 0.27 16 44 H 0.09 0.76 6.76 -51.93 -0.35 0.41 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -30.67 364.59 -8.61 -39.27 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.65 Total: 8.98 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -3.71 Total: -25.84 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.71 Total: -33.49 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.44 Total: -9.64 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.67 -8.61 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212613148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.893 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds