Wall clock time and date at job start Tue Mar 31 2020 14:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 112.99938 * 2 1 4 4 C 1.38294 * 119.92395 * 66.83541 * 3 2 1 5 5 C 1.38093 * 120.07793 * 179.97438 * 4 3 2 6 6 C 1.38939 * 119.92172 * 0.02562 * 5 4 3 7 7 N 1.39684 * 120.07857 * 179.97438 * 6 5 4 8 8 C 1.39796 * 120.00111 * 154.04722 * 7 6 5 9 9 C 1.38973 * 120.00362 * 149.37138 * 8 7 6 10 10 C 1.37994 * 119.99075 * 180.02562 * 9 8 7 11 11 C 1.38907 * 120.00582 * 0.02562 * 10 9 8 12 12 O 1.35795 * 119.99298 * 179.97438 * 11 10 9 13 13 C 1.34812 * 116.99525 * 353.15893 * 12 11 10 14 14 H 1.08005 * 120.00458 * 5.33918 * 13 12 11 15 15 C 1.38619 * 119.99905 * 185.34480 * 13 12 11 16 16 N 1.31581 * 119.99600 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00111 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47232 * 89.99631 * 17 15 13 19 19 H 1.48501 * 109.46923 * 209.99646 * 17 15 13 20 20 H 1.48495 * 109.47098 * 329.99483 * 17 15 13 21 21 C 1.38911 * 120.01805 * 0.24790 * 11 10 9 22 22 C 1.37995 * 120.00372 * 359.45282 * 21 11 10 23 23 C 1.38936 * 119.84726 * 0.25425 * 6 5 4 24 24 C 1.38097 * 119.92138 * 359.49155 * 23 6 5 25 25 C 1.54042 * 113.81155 * 131.82400 * 2 1 3 26 26 O 1.44448 * 85.42377 * 91.81195 * 25 2 1 27 27 C 1.44173 * 93.37903 * 24.08754 * 26 25 2 28 28 H 1.08999 * 109.46778 * 60.00418 * 1 2 3 29 29 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47281 * 300.00290 * 1 2 3 31 31 H 1.07999 * 119.96293 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.04247 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99826 * 334.05229 * 7 6 5 34 34 H 1.07998 * 120.00271 * 0.04319 * 9 8 7 35 35 H 1.07997 * 119.99470 * 179.97438 * 10 9 8 36 36 H 0.97006 * 120.00073 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.99748 * 179.72882 * 21 11 10 38 38 H 1.08003 * 120.00164 * 180.24642 * 22 21 11 39 39 H 1.08001 * 120.03808 * 179.74971 * 23 6 5 40 40 H 1.08000 * 119.96283 * 180.23067 * 24 23 6 41 41 H 1.09001 * 113.86110 * 205.91372 * 25 2 1 42 42 H 1.08992 * 113.86682 * 337.61868 * 25 2 1 43 43 H 1.08998 * 113.86010 * 221.76810 * 27 26 25 44 44 H 1.09004 * 113.98382 * 90.07965 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1188 1.3872 0.0000 4 6 1.9544 2.2064 1.1019 5 6 2.4930 3.4780 1.1056 6 6 3.2004 3.9341 0.0002 7 7 3.7462 5.2199 0.0001 8 6 4.8619 5.5057 -0.7923 9 6 5.0372 6.7830 -1.3109 10 6 6.1383 7.0647 -2.0935 11 6 7.0711 6.0714 -2.3634 12 8 8.1543 6.3487 -3.1340 13 6 8.1931 7.5616 -3.7213 14 1 7.4299 8.2932 -3.5006 15 6 9.2127 7.8697 -4.6085 16 7 10.1427 6.9785 -4.8770 17 14 9.2662 9.5499 -5.4228 18 1 10.0544 10.4840 -4.5793 19 1 9.9031 9.4323 -6.7591 20 1 7.8836 10.0693 -5.5774 21 6 6.8933 4.7930 -1.8498 22 6 5.7956 4.5123 -1.0621 23 6 3.3588 3.1105 -1.1075 24 6 2.8219 1.8382 -1.1022 25 6 2.1519 -0.9398 1.0502 26 8 2.1470 -1.9297 -0.0018 27 6 2.1521 -0.9398 -1.0499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.4040 1.8514 1.9607 32 1 2.3646 4.1172 1.9666 33 1 3.3511 5.9145 0.5500 34 1 4.3118 7.5552 -1.1012 35 1 6.2743 8.0572 -2.4969 36 1 10.8564 7.1941 -5.4976 37 1 7.6165 4.0199 -2.0635 38 1 5.6595 3.5194 -0.6595 39 1 3.9046 3.4634 -1.9700 40 1 2.9478 1.1960 -1.9614 41 1 3.1502 -0.6428 1.3716 42 1 1.4868 -1.1741 1.8812 43 1 1.4870 -1.1743 -1.8810 44 1 3.1495 -0.6416 -1.3730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212613148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:43 Heat of formation + Delta-G solvation = 1.878421 kcal Electronic energy + Delta-G solvation = -25959.769217 eV Core-core repulsion = 22229.327768 eV Total energy + Delta-G solvation = -3730.441449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92972 -41.05576 -40.00749 -38.40911 -35.97316 -34.21180 -33.27318 -32.13508 -31.74189 -30.05453 -28.56722 -27.56058 -27.24777 -26.72047 -24.16291 -23.56153 -23.02981 -22.16540 -19.94451 -19.87892 -18.98083 -18.38558 -18.03279 -17.43966 -16.87017 -16.76234 -16.30924 -16.09102 -15.67179 -15.45006 -15.35799 -15.17632 -14.58524 -14.40877 -14.38542 -14.25919 -14.04117 -13.99234 -13.55236 -13.34466 -13.19363 -13.03556 -12.90719 -12.79578 -12.65844 -12.35567 -12.19201 -12.12023 -11.44739 -11.43088 -11.30750 -11.10853 -10.69876 -10.56420 -9.88641 -9.79133 -9.28265 -8.44311 -7.97251 -6.09926 0.33085 0.48151 0.55435 0.91117 1.36334 1.45481 1.53614 2.19251 2.44509 2.72130 2.81003 2.95123 3.17465 3.23540 3.55527 3.78618 3.99497 4.04690 4.08565 4.11804 4.14912 4.25774 4.44280 4.48166 4.52685 4.55009 4.60856 4.66612 4.74771 4.85637 4.93817 4.96131 4.98068 5.07700 5.12197 5.14749 5.19320 5.20991 5.31339 5.38448 5.41924 5.52355 5.56492 5.67742 5.74577 5.87384 6.04505 6.07187 6.55662 6.87446 7.00836 7.83015 8.79327 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.002234 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.553215 B =12531.063980 C =13215.398896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.072 4.072 5 C -0.173 4.173 6 C 0.182 3.818 7 N -0.676 5.676 8 C 0.105 3.895 9 C -0.106 4.106 10 C -0.209 4.209 11 C 0.092 3.908 12 O -0.234 6.234 13 C -0.410 4.410 14 H 0.103 0.897 15 C -0.026 4.026 16 N -0.923 5.923 17 Si 1.018 2.982 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.252 1.252 21 C -0.171 4.171 22 C -0.104 4.104 23 C -0.186 4.186 24 C -0.086 4.086 25 C 0.045 3.955 26 O -0.406 6.406 27 C 0.034 3.966 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.416 0.584 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.271 0.729 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.511 -9.493 12.874 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.074 4.074 3 C -0.125 4.125 4 C -0.090 4.090 5 C -0.195 4.195 6 C 0.083 3.917 7 N -0.301 5.301 8 C 0.008 3.992 9 C -0.127 4.127 10 C -0.228 4.228 11 C 0.041 3.959 12 O -0.141 6.141 13 C -0.486 4.486 14 H 0.120 0.880 15 C -0.223 4.223 16 N -0.562 5.562 17 Si 0.837 3.163 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.176 1.176 21 C -0.191 4.191 22 C -0.125 4.125 23 C -0.208 4.208 24 C -0.104 4.104 25 C -0.032 4.032 26 O -0.326 6.326 27 C -0.042 4.042 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.254 0.746 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.076 -9.968 12.631 26.516 hybrid contribution 0.667 1.178 -0.596 1.479 sum -20.409 -8.791 12.035 25.271 Atomic orbital electron populations 1.21569 0.90354 1.02659 1.03294 1.22465 0.97816 0.91051 0.96083 1.19582 1.01628 0.95994 0.95254 1.20912 0.97730 0.92355 0.98026 1.20945 1.03812 0.97663 0.97054 1.17972 0.94495 0.85459 0.93777 1.41804 1.29966 1.10084 1.48226 1.17347 0.89271 0.94050 0.98498 1.20739 0.97887 0.96579 0.97524 1.21095 0.97051 0.99772 1.04912 1.19818 0.88253 0.94583 0.93223 1.83952 1.36976 1.36110 1.57099 1.21797 1.13098 0.89396 1.24291 0.88023 1.26565 0.94512 1.04193 0.96981 1.70201 1.13826 1.36853 1.35288 0.84598 0.79612 0.74717 0.77371 1.18854 1.19816 1.17598 1.20230 1.00633 0.94189 1.04027 1.20627 0.92460 0.99670 0.99721 1.20990 1.05886 0.96150 0.97741 1.20935 0.96350 0.94733 0.98404 1.24288 1.01080 0.85507 0.92284 1.89682 1.95890 1.28865 1.18135 1.24287 1.01166 0.86174 0.92581 0.91795 0.91510 0.90555 0.83646 0.84049 0.74588 0.83617 0.85685 0.91975 0.86694 0.84787 0.87346 0.85365 0.90114 0.87274 0.88035 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.00 71.98 0.65 -0.73 16 2 C -0.07 -1.06 1.13 -52.23 -0.06 -1.11 16 3 C -0.12 -2.09 4.89 -19.84 -0.10 -2.19 16 4 C -0.07 -1.10 9.45 22.25 0.21 -0.89 16 5 C -0.17 -3.04 9.94 22.40 0.22 -2.81 16 6 C 0.18 4.16 6.04 38.23 0.23 4.39 16 7 N -0.68 -16.00 5.47 -180.39 -0.99 -16.99 16 8 C 0.10 3.26 5.95 38.22 0.23 3.49 16 9 C -0.11 -3.52 9.95 22.39 0.22 -3.30 16 10 C -0.21 -8.80 9.16 22.37 0.20 -8.60 16 11 C 0.09 4.50 6.64 22.59 0.15 4.65 16 12 O -0.23 -14.04 9.76 -23.06 -0.22 -14.26 16 13 C -0.41 -23.67 9.48 67.91 0.64 -23.02 16 14 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 15 C -0.03 -1.45 5.49 84.82 0.47 -0.98 16 16 N -0.92 -56.85 13.67 21.61 0.30 -56.55 16 17 Si 1.02 42.70 29.55 68.60 2.03 44.73 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 C -0.17 -7.30 9.98 22.37 0.22 -7.07 16 22 C -0.10 -3.60 7.74 22.39 0.17 -3.43 16 23 C -0.19 -4.61 7.83 22.40 0.18 -4.44 16 24 C -0.09 -1.77 9.04 22.25 0.20 -1.57 16 25 C 0.04 0.65 8.26 72.30 0.60 1.25 16 26 O -0.41 -8.18 12.38 -148.98 -1.84 -10.02 16 27 C 0.03 0.56 7.51 72.29 0.54 1.10 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.08 0.67 8.11 -2.39 -0.02 0.65 16 31 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.42 7.59 8.89 -92.71 -0.82 6.76 16 34 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 35 H 0.13 5.32 5.65 -2.91 -0.02 5.30 16 36 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 38 H 0.13 4.17 6.51 -2.91 -0.02 4.15 16 39 H 0.11 3.15 6.33 -2.91 -0.02 3.13 16 40 H 0.13 2.35 6.44 -2.91 -0.02 2.33 16 41 H 0.08 1.20 8.09 -2.39 -0.02 1.19 16 42 H 0.11 1.14 8.10 -2.39 -0.02 1.13 16 43 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 44 H 0.08 1.37 6.76 -2.38 -0.02 1.35 16 Total: -1.00 -71.55 364.59 4.46 -67.09 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.21 Total: 31.28 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 4.98 Total: -45.27 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -0.69 Total: -73.54 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -2.07 Total: -24.29 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.55 4.46 -67.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212613148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.967 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds