Wall clock time and date at job start Tue Mar 31 2020 15:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 C 1.52999 * 109.46976 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47110 * 179.29707 * 4 3 2 6 6 C 1.46900 * 110.99327 * 287.82059 * 5 4 3 7 7 C 1.50706 * 109.47325 * 298.82249 * 6 5 4 8 8 H 1.07999 * 119.99798 * 4.68167 * 7 6 5 9 9 C 1.37876 * 120.00111 * 184.67841 * 7 6 5 10 10 N 1.31519 * 119.99612 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00178 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46827 * 59.99721 * 11 9 7 13 13 H 1.48497 * 109.47329 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46870 * 300.00345 * 11 9 7 15 15 C 1.46898 * 111.00239 * 163.86909 * 5 4 3 16 16 C 1.50694 * 109.47098 * 189.99286 * 15 5 4 17 17 S 1.70444 * 124.60024 * 270.02236 * 16 15 5 18 18 C 1.75507 * 92.45412 * 179.97438 * 17 16 15 19 19 C 1.32727 * 110.59943 * 0.02562 * 18 17 16 20 20 C 1.36110 * 124.59260 * 89.71978 * 16 15 5 21 21 C 1.47029 * 123.47425 * 0.04153 * 20 16 15 22 22 O 1.21558 * 120.00221 * 359.97438 * 21 20 16 23 23 O 1.34800 * 119.99541 * 179.97438 * 21 20 16 24 24 C 1.45201 * 116.99814 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.47264 * 179.97438 * 24 23 21 26 26 H 1.08998 * 109.46763 * 300.00101 * 1 2 3 27 27 H 1.08998 * 109.46531 * 59.99774 * 1 2 3 28 28 H 1.08997 * 109.46844 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46763 * 239.99899 * 2 1 3 30 30 H 1.08998 * 109.46531 * 120.00226 * 2 1 3 31 31 H 1.08999 * 109.46921 * 59.99976 * 3 2 1 32 32 H 1.08998 * 109.47166 * 299.99921 * 3 2 1 33 33 H 1.08994 * 109.47091 * 59.29267 * 4 3 2 34 34 H 1.09002 * 109.47120 * 299.29073 * 4 3 2 35 35 H 1.09001 * 109.47492 * 58.82266 * 6 5 4 36 36 H 1.09002 * 109.46924 * 178.82705 * 6 5 4 37 37 H 0.97009 * 119.99596 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.46975 * 309.99930 * 15 5 4 39 39 H 1.09003 * 109.47122 * 69.99372 * 15 5 4 40 40 H 1.08002 * 124.69608 * 179.97438 * 18 17 16 41 41 H 1.08008 * 123.45630 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.47526 * 300.00371 * 24 23 21 43 43 H 1.08999 * 109.47421 * 59.99603 * 24 23 21 44 44 H 1.08997 * 109.47465 * 299.99996 * 25 24 23 45 45 H 1.09000 * 109.46957 * 60.00080 * 25 24 23 46 46 H 1.09002 * 109.47226 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0598 2.8274 -0.0163 6 6 3.8401 3.4472 -1.3299 7 6 4.5985 2.6787 -2.3813 8 1 5.1232 1.7731 -2.1148 9 6 4.6224 3.1315 -3.6833 10 7 3.9837 4.2345 -4.0077 11 14 5.5618 2.1786 -4.9866 12 1 5.0047 0.8062 -5.0942 13 1 5.4318 2.8691 -6.2948 14 1 6.9954 2.1023 -4.6069 15 6 5.4772 2.8893 0.3645 16 6 5.8785 4.3265 0.5747 17 16 6.4950 5.3472 -0.6432 18 6 6.6513 6.6998 0.4643 19 6 6.2483 6.3558 1.6812 20 6 5.7923 4.9873 1.7615 21 6 5.2915 4.3705 2.9986 22 8 4.9268 3.2109 2.9952 23 8 5.2367 5.0909 4.1366 24 6 4.7309 4.4175 5.3194 25 6 4.7441 5.3868 6.5030 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9176 -0.8826 34 1 3.9330 0.9398 0.8972 35 1 2.7760 3.4318 -1.5656 36 1 4.1927 4.4784 -1.3086 37 1 4.0008 4.5534 -4.9237 38 1 5.6300 2.3305 1.2879 39 1 6.0858 2.4543 -0.4283 40 1 7.0244 7.6763 0.1932 41 1 6.2557 7.0313 2.5240 42 1 3.7106 4.0800 5.1370 43 1 5.3624 3.5586 5.5465 44 1 5.7645 5.7239 6.6853 45 1 4.1128 6.2459 6.2761 46 1 4.3639 4.8815 7.3908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233019277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:47 Heat of formation + Delta-G solvation = -66.830211 kcal Electronic energy + Delta-G solvation = -26170.461234 eV Core-core repulsion = 22572.484306 eV Total energy + Delta-G solvation = -3597.976928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08056 -37.74347 -36.59178 -35.92327 -34.18564 -32.44034 -31.67180 -30.41050 -28.22558 -27.06305 -25.66334 -23.74360 -23.17472 -22.48678 -21.33904 -20.74684 -19.67220 -19.25301 -17.15306 -16.58023 -16.30127 -15.96585 -15.84383 -15.18527 -14.72667 -14.56583 -14.08785 -13.92693 -13.75190 -13.48576 -13.03226 -12.91277 -12.70227 -12.55591 -12.34725 -12.05191 -11.92881 -11.89659 -11.73821 -11.54062 -11.18656 -10.94642 -10.91329 -10.72302 -10.51204 -10.50161 -10.37637 -10.36612 -10.12867 -9.96162 -9.80846 -9.70005 -9.48712 -8.45030 -8.43168 -7.90846 -7.10343 -6.02396 -4.11872 1.19290 1.98827 2.20273 2.40808 3.12047 3.26427 3.32136 3.34674 3.52909 4.39082 4.90796 4.93185 4.97484 5.05929 5.23222 5.26986 5.27549 5.42978 5.46899 5.59628 5.59749 5.71526 5.73379 5.77744 5.88293 5.96624 6.06157 6.18719 6.22256 6.26920 6.34202 6.40320 6.43157 6.45743 6.59048 6.61220 6.72463 6.80906 6.96760 7.02746 7.28657 7.54356 7.90635 8.09581 8.20006 8.27550 8.32865 8.98036 9.54326 11.01492 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.005013 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.136340 B = 5584.406884 C = 7950.376133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.108 4.108 4 C 0.066 3.934 5 N -0.528 5.528 6 C 0.174 3.826 7 C -0.549 4.549 8 H 0.055 0.945 9 C 0.072 3.928 10 N -0.885 5.885 11 Si 0.880 3.120 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.114 3.886 16 C -0.103 4.103 17 S 0.265 5.735 18 C -0.273 4.273 19 C -0.095 4.095 20 C -0.172 4.172 21 C 0.533 3.467 22 O -0.495 6.495 23 O -0.360 6.360 24 C 0.064 3.936 25 C -0.151 4.151 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 1.877 14.075 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.146 4.146 4 C -0.062 4.062 5 N -0.252 5.252 6 C 0.048 3.952 7 C -0.589 4.589 8 H 0.073 0.927 9 C -0.131 4.131 10 N -0.523 5.523 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.015 4.015 16 C -0.224 4.224 17 S 0.533 5.467 18 C -0.408 4.408 19 C -0.124 4.124 20 C -0.188 4.188 21 C 0.376 3.624 22 O -0.384 6.384 23 O -0.278 6.278 24 C -0.010 4.010 25 C -0.208 4.208 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.180 0.820 41 H 0.162 0.838 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.398 1.764 12.752 13.095 hybrid contribution 0.493 -0.746 0.084 0.898 sum 2.890 1.018 12.836 13.197 Atomic orbital electron populations 1.21746 0.96481 1.00696 1.01667 1.21475 0.95251 0.97866 1.01342 1.21485 0.95677 0.95209 1.02191 1.21890 0.94735 0.89929 0.99660 1.62434 1.13647 1.17080 1.32039 1.19985 0.97239 0.95338 0.82599 1.21637 1.32927 1.10033 0.94264 0.92682 1.24874 0.95248 0.94763 0.98246 1.69936 1.41952 1.21409 1.18980 0.86847 0.80651 0.80386 0.81342 1.20315 1.21180 1.20206 1.20706 0.91648 0.87954 1.01215 1.24726 0.99365 1.02249 0.96100 1.84025 1.55655 0.98603 1.08421 1.25642 1.12029 1.04975 0.98185 1.21048 0.99589 0.94098 0.97665 1.19090 1.13229 0.94913 0.91576 1.20400 0.75074 0.84216 0.82683 1.90813 1.44794 1.17498 1.85280 1.86563 1.77680 1.45107 1.18429 1.22911 0.99612 0.95620 0.82894 1.21787 1.03193 0.99925 0.95893 0.93100 0.92771 0.93478 0.92257 0.92750 0.92485 0.91470 0.93619 0.93098 0.95050 0.94319 0.92785 0.88763 0.92938 0.82037 0.83800 0.91317 0.91567 0.91676 0.91559 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.11 -1.99 5.28 -26.73 -0.14 -2.13 16 4 C 0.07 1.34 4.80 -3.82 -0.02 1.32 16 5 N -0.53 -11.63 4.66 -237.52 -1.11 -12.73 16 6 C 0.17 4.35 4.72 -4.97 -0.02 4.33 16 7 C -0.55 -14.32 7.33 -34.44 -0.25 -14.57 16 8 H 0.06 1.44 5.95 -52.49 -0.31 1.13 16 9 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 10 N -0.88 -24.77 13.29 55.43 0.74 -24.04 16 11 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.11 2.35 4.49 -4.98 -0.02 2.33 16 16 C -0.10 -1.99 5.15 -35.08 -0.18 -2.17 16 17 S 0.26 4.79 21.34 -107.50 -2.29 2.49 16 18 C -0.27 -4.04 11.12 28.85 0.32 -3.72 16 19 C -0.10 -1.44 10.13 -39.01 -0.40 -1.84 16 20 C -0.17 -3.08 5.98 -104.65 -0.63 -3.70 16 21 C 0.53 9.43 7.92 34.29 0.27 9.70 16 22 O -0.50 -9.68 13.86 -19.31 -0.27 -9.95 16 23 O -0.36 -5.39 9.95 -40.76 -0.41 -5.79 16 24 C 0.06 0.75 6.20 37.16 0.23 0.98 16 25 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.38 6.73 -51.93 -0.35 1.03 16 33 H 0.05 0.99 6.16 -51.93 -0.32 0.67 16 34 H 0.05 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.03 0.86 6.66 -51.93 -0.35 0.51 16 36 H 0.04 1.01 5.86 -51.93 -0.30 0.71 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 1.92 5.67 -51.93 -0.29 1.62 16 39 H 0.05 1.13 6.58 -51.93 -0.34 0.79 16 40 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.14 1.84 8.06 -52.48 -0.42 1.41 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -29.14 384.06 -10.22 -39.35 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.30 Total: 1.36 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.34 Total: -12.20 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.37 Total: -36.77 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.67 Total: -15.74 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.29 Total: 2.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.14 -10.22 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233019277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.475 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds