Wall clock time and date at job start Tue Mar 31 2020 13:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 120.00360 * 2 1 4 4 N 1.34780 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.40110 * 120.00244 * 185.75805 * 4 2 1 6 6 C 1.38870 * 120.01215 * 34.50529 * 5 4 2 7 7 C 1.38062 * 119.98156 * 179.97438 * 6 5 4 8 8 C 1.38737 * 120.01902 * 0.02562 * 7 6 5 9 9 O 1.35977 * 119.98775 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99993 * 5.48431 * 9 8 7 11 11 H 1.09004 * 109.46738 * 35.23727 * 10 9 8 12 12 C 1.50701 * 109.47192 * 275.24267 * 10 9 8 13 13 H 1.08001 * 120.00158 * 125.19648 * 12 10 9 14 14 C 1.37875 * 120.00143 * 305.20010 * 12 10 9 15 15 N 1.31520 * 119.99541 * 355.01445 * 14 12 10 16 16 Si 1.86793 * 120.00274 * 175.01544 * 14 12 10 17 17 H 1.48506 * 109.47124 * 89.99741 * 16 14 12 18 18 H 1.48500 * 109.47497 * 209.99623 * 16 14 12 19 19 H 1.48501 * 109.47375 * 330.00244 * 16 14 12 20 20 C 1.50693 * 109.46829 * 155.24057 * 10 9 8 21 21 C 1.38237 * 120.00405 * 356.00678 * 20 10 9 22 22 C 1.38227 * 119.99906 * 180.34481 * 21 20 10 23 23 C 1.38237 * 120.00503 * 359.88827 * 22 21 20 24 24 C 1.38232 * 119.99591 * 0.08605 * 23 22 21 25 25 C 1.38231 * 120.00199 * 359.97438 * 24 23 22 26 26 C 1.38703 * 120.02975 * 0.24911 * 8 7 6 27 27 C 1.50698 * 119.99480 * 179.72790 * 26 8 7 28 28 C 1.38107 * 120.01247 * 359.49491 * 26 8 7 29 29 H 1.09007 * 109.47090 * 239.99475 * 1 2 3 30 30 H 1.08996 * 109.47368 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47626 * 120.00084 * 1 2 3 32 32 H 0.97001 * 120.00109 * 5.76147 * 4 2 1 33 33 H 1.08000 * 120.00793 * 359.95756 * 6 5 4 34 34 H 1.08004 * 119.99308 * 179.97438 * 7 6 5 35 35 H 0.96998 * 119.99348 * 180.02562 * 15 14 12 36 36 H 1.08003 * 119.99758 * 0.27576 * 21 20 10 37 37 H 1.08004 * 120.00180 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.00239 * 180.11040 * 23 22 21 39 39 H 1.07997 * 119.99754 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.00310 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47178 * 89.99934 * 27 26 8 42 42 H 1.08997 * 109.47207 * 210.00433 * 27 26 8 43 43 H 1.09005 * 109.46967 * 329.99906 * 27 26 8 44 44 H 1.07997 * 120.00722 * 180.27465 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1704 0.1212 6 6 4.2073 -0.2168 0.9095 7 6 5.5827 -0.2209 1.0294 8 6 6.3348 -1.1770 0.3623 9 8 7.6894 -1.1801 0.4804 10 6 8.2625 -0.2487 1.4003 11 1 7.6026 -0.1346 2.2603 12 6 8.4376 1.0851 0.7211 13 1 8.0076 1.9742 1.1580 14 6 9.1468 1.1704 -0.4582 15 7 9.7531 0.1070 -0.9392 16 14 9.2466 2.7961 -1.3727 17 1 10.4275 3.5603 -0.8966 18 1 9.3786 2.5377 -2.8291 19 1 8.0129 3.5831 -1.1194 20 6 9.6040 -0.7581 1.8605 21 6 10.0504 -1.9998 1.4484 22 6 11.2778 -2.4700 1.8763 23 6 12.0600 -1.6976 2.7144 24 6 11.6139 -0.4556 3.1260 25 6 10.3859 0.0141 2.6991 26 6 5.7059 -2.1263 -0.4298 27 6 6.5241 -3.1606 -1.1589 28 6 4.3298 -2.1266 -0.5464 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6995 -2.0051 -0.0852 33 1 3.6221 0.5279 1.4283 34 1 6.0735 0.5209 1.6421 35 1 10.2524 0.1671 -1.7687 36 1 9.4396 -2.6031 0.7931 37 1 11.6267 -3.4400 1.5541 38 1 13.0197 -2.0642 3.0473 39 1 12.2248 0.1477 3.7811 40 1 10.0372 0.9843 3.0211 41 1 6.6492 -4.0382 -0.5246 42 1 6.0126 -3.4466 -2.0780 43 1 7.5022 -2.7453 -1.4016 44 1 3.8399 -2.8685 -1.1596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234605636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:54 Heat of formation + Delta-G solvation = -22.634113 kcal Electronic energy + Delta-G solvation = -27283.633043 eV Core-core repulsion = 23552.128650 eV Total energy + Delta-G solvation = -3731.504392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20507 -39.05466 -38.07644 -36.47349 -34.30266 -32.81228 -31.97294 -30.69506 -30.23043 -29.88210 -27.89255 -26.90381 -25.98378 -23.47006 -21.93257 -21.85474 -21.39514 -20.05892 -19.65822 -17.43973 -17.23320 -16.53805 -16.20665 -15.95522 -15.33142 -14.93343 -14.65450 -14.11414 -13.94073 -13.88353 -13.87068 -13.42790 -12.97025 -12.85410 -12.73098 -12.58554 -12.43855 -12.31040 -11.98572 -11.87439 -11.72651 -11.53572 -11.30502 -11.18980 -10.95587 -10.70994 -10.50846 -10.31702 -10.07438 -9.87631 -9.61132 -9.44750 -8.94578 -8.66256 -8.18133 -7.93563 -7.56958 -6.84506 -6.09047 -4.29716 1.93348 1.99215 2.38588 2.42595 2.79440 3.25809 3.27253 3.34150 3.39131 4.33919 4.43412 4.47543 4.73119 4.82314 5.07577 5.17732 5.24295 5.42567 5.47763 5.62294 5.72818 5.76926 5.83516 5.91408 5.93215 6.12954 6.14079 6.23995 6.26247 6.37263 6.46169 6.54571 6.56998 6.68177 6.76700 6.94552 6.96663 7.02322 7.08266 7.24580 7.39157 7.46667 7.53580 7.60603 7.69903 7.76532 7.93950 8.05118 8.27467 8.54357 8.90281 9.45331 10.90351 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003913 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.867935 B = 7154.241450 C = 8002.957839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.527 6.527 4 N -0.669 5.669 5 C 0.071 3.929 6 C -0.082 4.082 7 C -0.185 4.185 8 C 0.167 3.833 9 O -0.284 6.284 10 C 0.238 3.762 11 H 0.037 0.963 12 C -0.561 4.561 13 H 0.065 0.935 14 C 0.093 3.907 15 N -0.839 5.839 16 Si 0.885 3.115 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.010 4.010 21 C -0.086 4.086 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.106 4.106 26 C -0.125 4.125 27 C -0.097 4.097 28 C -0.108 4.108 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.404 0.596 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.263 0.737 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 -7.323 3.196 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.289 3.711 3 O -0.403 6.403 4 N -0.314 5.314 5 C -0.022 4.022 6 C -0.103 4.103 7 C -0.204 4.204 8 C 0.118 3.882 9 O -0.195 6.195 10 C 0.184 3.816 11 H 0.055 0.945 12 C -0.598 4.598 13 H 0.083 0.917 14 C -0.116 4.116 15 N -0.472 5.472 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.010 4.010 21 C -0.104 4.104 22 C -0.152 4.152 23 C -0.167 4.167 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.154 4.154 28 C -0.128 4.128 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.238 0.762 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.152 -6.743 2.965 12.543 hybrid contribution -0.127 0.800 -0.781 1.125 sum -10.279 -5.943 2.184 12.072 Atomic orbital electron populations 1.21907 0.91522 1.05566 1.04124 1.20899 0.90556 0.83579 0.76084 1.90778 1.70516 1.31231 1.47771 1.43430 1.05761 1.09076 1.73181 1.17386 0.81872 1.00695 1.02203 1.20758 0.94274 0.97939 0.97279 1.21296 0.93429 1.00979 1.04706 1.18908 0.84841 0.91923 0.92533 1.86222 1.14289 1.58240 1.60771 1.18897 0.87761 0.87509 0.87393 0.94494 1.21188 1.37204 0.92349 1.09050 0.91683 1.24911 0.93535 0.96234 0.96934 1.70017 1.29223 1.28181 1.19804 0.86695 0.78655 0.84166 0.79237 1.20463 1.21003 1.19541 1.19876 0.96603 0.92204 0.92322 1.20870 0.95524 0.96070 0.97900 1.20960 0.95619 0.99364 0.99276 1.20797 0.99325 0.95703 1.00879 1.20850 0.96589 0.96273 1.01558 1.20712 0.94189 0.99059 0.98502 1.18961 0.92511 0.99126 1.02091 1.20508 1.00426 0.96412 0.98038 1.20350 0.92544 0.99832 1.00114 0.89377 0.88921 0.89497 0.76174 0.85988 0.84504 0.92756 0.86290 0.87748 0.87885 0.87589 0.86727 0.92352 0.92953 0.90233 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.32 36.00 0.37 -0.93 16 2 C 0.50 6.68 7.66 -10.99 -0.08 6.60 16 3 O -0.53 -9.86 14.88 5.55 0.08 -9.77 16 4 N -0.67 -8.38 5.34 -9.83 -0.05 -8.43 16 5 C 0.07 1.18 6.26 -83.62 -0.52 0.65 16 6 C -0.08 -1.58 8.65 -39.41 -0.34 -1.92 16 7 C -0.18 -3.87 8.70 -39.46 -0.34 -4.22 16 8 C 0.17 3.61 6.57 -39.23 -0.26 3.35 16 9 O -0.28 -6.69 6.55 -19.67 -0.13 -6.82 16 10 C 0.24 5.66 2.17 -29.04 -0.06 5.59 16 11 H 0.04 0.84 6.32 -51.93 -0.33 0.51 16 12 C -0.56 -14.54 7.43 -34.44 -0.26 -14.80 16 13 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 14 C 0.09 2.48 5.25 -17.82 -0.09 2.39 16 15 N -0.84 -22.85 11.84 55.43 0.66 -22.19 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.01 -0.22 4.39 -104.63 -0.46 -0.68 16 21 C -0.09 -1.86 9.23 -39.59 -0.37 -2.23 16 22 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 23 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 24 C -0.13 -2.54 10.05 -39.59 -0.40 -2.93 16 25 C -0.11 -2.26 9.27 -39.58 -0.37 -2.62 16 26 C -0.13 -2.36 5.89 -104.50 -0.62 -2.97 16 27 C -0.10 -1.63 9.79 36.00 0.35 -1.27 16 28 C -0.11 -1.76 9.61 -39.41 -0.38 -2.13 16 29 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.35 8.82 -40.82 -0.36 2.99 16 33 H 0.12 2.33 6.52 -52.49 -0.34 1.99 16 34 H 0.14 2.94 5.67 -52.48 -0.30 2.65 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.12 2.64 7.01 -52.48 -0.37 2.27 16 37 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 2.34 7.96 -52.48 -0.42 1.93 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 43 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 44 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -31.68 369.62 -9.36 -41.04 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.85 Total: 8.61 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -4.62 Total: -24.22 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.60 Total: -30.62 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.68 -9.36 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234605636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.406 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds