Wall clock time and date at job start Tue Mar 31 2020 13:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 120.00360 * 2 1 4 4 N 1.34780 * 119.99891 * 180.02562 * 2 1 3 5 5 C 1.40110 * 120.00244 * 185.75805 * 4 2 1 6 6 C 1.38870 * 120.01215 * 34.50529 * 5 4 2 7 7 C 1.38062 * 119.98156 * 179.97438 * 6 5 4 8 8 C 1.38737 * 120.01902 * 0.02562 * 7 6 5 9 9 O 1.35977 * 119.98775 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99993 * 5.48431 * 9 8 7 11 11 H 1.09004 * 109.46738 * 35.23727 * 10 9 8 12 12 C 1.50701 * 109.47192 * 275.24267 * 10 9 8 13 13 H 1.08001 * 120.00158 * 125.19648 * 12 10 9 14 14 C 1.37875 * 120.00143 * 305.20010 * 12 10 9 15 15 N 1.31520 * 119.99541 * 355.01445 * 14 12 10 16 16 Si 1.86793 * 120.00274 * 175.01544 * 14 12 10 17 17 H 1.48506 * 109.47124 * 89.99741 * 16 14 12 18 18 H 1.48500 * 109.47497 * 209.99623 * 16 14 12 19 19 H 1.48501 * 109.47375 * 330.00244 * 16 14 12 20 20 C 1.50693 * 109.46829 * 155.24057 * 10 9 8 21 21 C 1.38237 * 120.00405 * 356.00678 * 20 10 9 22 22 C 1.38227 * 119.99906 * 180.34481 * 21 20 10 23 23 C 1.38237 * 120.00503 * 359.88827 * 22 21 20 24 24 C 1.38232 * 119.99591 * 0.08605 * 23 22 21 25 25 C 1.38231 * 120.00199 * 359.97438 * 24 23 22 26 26 C 1.38703 * 120.02975 * 0.24911 * 8 7 6 27 27 C 1.50698 * 119.99480 * 179.72790 * 26 8 7 28 28 C 1.38107 * 120.01247 * 359.49491 * 26 8 7 29 29 H 1.09007 * 109.47090 * 239.99475 * 1 2 3 30 30 H 1.08996 * 109.47368 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47626 * 120.00084 * 1 2 3 32 32 H 0.97001 * 120.00109 * 5.76147 * 4 2 1 33 33 H 1.08000 * 120.00793 * 359.95756 * 6 5 4 34 34 H 1.08004 * 119.99308 * 179.97438 * 7 6 5 35 35 H 0.96998 * 119.99348 * 180.02562 * 15 14 12 36 36 H 1.08003 * 119.99758 * 0.27576 * 21 20 10 37 37 H 1.08004 * 120.00180 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.00239 * 180.11040 * 23 22 21 39 39 H 1.07997 * 119.99754 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.00310 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47178 * 89.99934 * 27 26 8 42 42 H 1.08997 * 109.47207 * 210.00433 * 27 26 8 43 43 H 1.09005 * 109.46967 * 329.99906 * 27 26 8 44 44 H 1.07997 * 120.00722 * 180.27465 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1704 0.1212 6 6 4.2073 -0.2168 0.9095 7 6 5.5827 -0.2209 1.0294 8 6 6.3348 -1.1770 0.3623 9 8 7.6894 -1.1801 0.4804 10 6 8.2625 -0.2487 1.4003 11 1 7.6026 -0.1346 2.2603 12 6 8.4376 1.0851 0.7211 13 1 8.0076 1.9742 1.1580 14 6 9.1468 1.1704 -0.4582 15 7 9.7531 0.1070 -0.9392 16 14 9.2466 2.7961 -1.3727 17 1 10.4275 3.5603 -0.8966 18 1 9.3786 2.5377 -2.8291 19 1 8.0129 3.5831 -1.1194 20 6 9.6040 -0.7581 1.8605 21 6 10.0504 -1.9998 1.4484 22 6 11.2778 -2.4700 1.8763 23 6 12.0600 -1.6976 2.7144 24 6 11.6139 -0.4556 3.1260 25 6 10.3859 0.0141 2.6991 26 6 5.7059 -2.1263 -0.4298 27 6 6.5241 -3.1606 -1.1589 28 6 4.3298 -2.1266 -0.5464 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6995 -2.0051 -0.0852 33 1 3.6221 0.5279 1.4283 34 1 6.0735 0.5209 1.6421 35 1 10.2524 0.1671 -1.7687 36 1 9.4396 -2.6031 0.7931 37 1 11.6267 -3.4400 1.5541 38 1 13.0197 -2.0642 3.0473 39 1 12.2248 0.1477 3.7811 40 1 10.0372 0.9843 3.0211 41 1 6.6492 -4.0382 -0.5246 42 1 6.0126 -3.4466 -2.0780 43 1 7.5022 -2.7453 -1.4016 44 1 3.8399 -2.8685 -1.1596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234605636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:53 Heat of formation + Delta-G solvation = -40.343157 kcal Electronic energy + Delta-G solvation = -27284.400964 eV Core-core repulsion = 23552.128650 eV Total energy + Delta-G solvation = -3732.272314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51071 -40.54987 -39.58106 -38.00032 -35.66173 -34.65433 -33.43557 -32.35808 -31.50652 -31.18882 -29.11871 -28.70503 -27.43507 -25.28842 -23.38244 -23.27604 -22.86012 -21.64827 -20.95957 -19.16025 -18.51352 -17.93723 -17.71552 -17.48351 -16.86034 -16.61984 -15.97252 -15.70606 -15.57453 -15.43178 -15.19126 -14.79000 -14.57377 -14.35952 -13.99551 -13.86547 -13.65255 -13.47992 -13.41152 -13.29578 -13.22391 -13.03757 -12.90186 -12.79519 -12.65174 -12.47688 -12.25901 -11.89384 -11.64361 -11.41871 -11.16123 -10.97537 -10.67439 -10.47267 -9.64463 -9.50614 -9.21444 -8.39347 -8.07662 -6.35004 0.47393 0.53492 0.80394 0.85655 1.31388 1.35209 1.43181 1.68038 2.23078 2.35235 2.80744 2.94462 3.15793 3.32037 3.85609 4.02023 4.04968 4.31852 4.34137 4.35926 4.41538 4.49046 4.51144 4.57511 4.64481 4.68964 4.77557 4.81552 4.92782 4.98864 5.04024 5.06232 5.06744 5.15566 5.38669 5.40033 5.43229 5.55647 5.57950 5.62895 5.75713 5.83836 5.91524 5.93709 6.05823 6.25379 6.43850 6.56565 6.58336 7.09451 7.27085 7.42101 8.86604 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003913 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.867935 B = 7154.241450 C = 8002.957839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.495 3.505 3 O -0.589 6.589 4 N -0.654 5.654 5 C 0.083 3.917 6 C -0.098 4.098 7 C -0.202 4.202 8 C 0.126 3.874 9 O -0.297 6.297 10 C 0.241 3.759 11 H 0.028 0.972 12 C -0.568 4.568 13 H 0.050 0.950 14 C 0.057 3.943 15 N -0.857 5.857 16 Si 0.932 3.068 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.280 1.280 20 C -0.035 4.035 21 C -0.103 4.103 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.090 4.090 28 C -0.096 4.096 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.429 0.571 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.259 0.741 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 -9.400 2.670 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.286 3.714 3 O -0.469 6.469 4 N -0.302 5.302 5 C -0.011 4.011 6 C -0.118 4.118 7 C -0.221 4.221 8 C 0.078 3.922 9 O -0.209 6.209 10 C 0.187 3.813 11 H 0.046 0.954 12 C -0.606 4.606 13 H 0.068 0.932 14 C -0.150 4.150 15 N -0.491 5.491 16 Si 0.758 3.242 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.036 4.036 21 C -0.122 4.122 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.133 4.133 27 C -0.146 4.146 28 C -0.116 4.116 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.268 0.732 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.316 -8.859 2.442 14.577 hybrid contribution 0.083 1.401 -0.562 1.512 sum -11.233 -7.458 1.880 13.614 Atomic orbital electron populations 1.21926 0.86353 1.06371 1.07033 1.22056 0.92873 0.82498 0.74019 1.90768 1.72190 1.33467 1.50490 1.43401 1.03935 1.10511 1.72341 1.17499 0.84156 0.99195 1.00212 1.20763 0.93480 0.99039 0.98539 1.21181 0.94459 1.01070 1.05407 1.19329 0.84336 0.93819 0.94733 1.86169 1.15532 1.58077 1.61110 1.18755 0.88550 0.87048 0.86960 0.95411 1.21333 1.36712 0.93097 1.09411 0.93167 1.25409 0.93642 0.98397 0.97538 1.70122 1.29996 1.29141 1.19862 0.85981 0.78313 0.81583 0.78333 1.19540 1.20790 1.20505 1.19905 0.96453 0.93366 0.93848 1.20845 0.96847 0.95884 0.98579 1.21300 0.94478 1.00659 0.98826 1.21254 1.00441 0.94919 0.99414 1.21234 0.95612 0.96956 1.01171 1.20858 0.95528 0.99065 0.99180 1.19375 0.93983 0.98674 1.01235 1.20476 0.98562 0.96111 0.99495 1.20743 0.91369 1.00052 0.99414 0.86393 0.89295 0.86273 0.73166 0.86776 0.86794 0.93127 0.87823 0.84910 0.83853 0.84355 0.87304 0.90567 0.89840 0.93752 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.32 71.24 0.74 -1.10 16 2 C 0.49 12.31 7.66 87.66 0.67 12.98 16 3 O -0.59 -22.28 14.88 -3.05 -0.05 -22.33 16 4 N -0.65 -14.64 5.34 -303.39 -1.62 -16.26 16 5 C 0.08 2.68 6.26 38.11 0.24 2.92 16 6 C -0.10 -3.92 8.65 22.38 0.19 -3.72 16 7 C -0.20 -9.13 8.70 22.35 0.19 -8.93 16 8 C 0.13 5.75 6.57 22.50 0.15 5.90 16 9 O -0.30 -14.94 6.55 -93.29 -0.61 -15.55 16 10 C 0.24 12.33 2.17 29.10 0.06 12.39 16 11 H 0.03 1.42 6.32 -2.38 -0.02 1.40 16 12 C -0.57 -31.41 7.43 25.60 0.19 -31.22 16 13 H 0.05 2.82 7.82 -2.91 -0.02 2.79 16 14 C 0.06 3.15 5.25 84.65 0.44 3.59 16 15 N -0.86 -48.41 11.84 21.45 0.25 -48.16 16 16 Si 0.93 45.06 29.54 68.60 2.03 47.09 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 20 C -0.04 -1.69 4.39 -19.87 -0.09 -1.77 16 21 C -0.10 -4.63 9.23 22.27 0.21 -4.43 16 22 C -0.13 -5.02 10.05 22.27 0.22 -4.80 16 23 C -0.14 -4.83 10.05 22.27 0.22 -4.60 16 24 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 25 C -0.13 -5.59 9.27 22.27 0.21 -5.38 16 26 C -0.13 -4.92 5.89 -19.78 -0.12 -5.04 16 27 C -0.09 -2.94 9.79 71.24 0.70 -2.24 16 28 C -0.10 -2.90 9.61 22.38 0.22 -2.69 16 29 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 31 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.43 5.25 8.82 -92.71 -0.82 4.43 16 33 H 0.11 4.66 6.52 -2.91 -0.02 4.64 16 34 H 0.11 5.51 5.67 -2.91 -0.02 5.49 16 35 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.10 4.85 7.01 -2.91 -0.02 4.83 16 37 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 40 H 0.11 4.71 7.96 -2.91 -0.02 4.68 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 43 H 0.04 1.77 7.53 -2.38 -0.02 1.75 16 44 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -75.01 369.62 4.88 -70.13 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.21 Total: 27.79 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 4.67 Total: -42.71 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.37 Total: -64.42 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.66 Total: -37.87 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.01 4.88 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234605636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.783 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds