Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21283 * 119.99846 * 2 1 4 4 N 1.34784 * 119.99887 * 180.02562 * 2 1 3 5 5 C 1.40106 * 119.99880 * 184.96021 * 4 2 1 6 6 C 1.38870 * 120.01419 * 214.29915 * 5 4 2 7 7 C 1.38062 * 119.98388 * 179.72393 * 6 5 4 8 8 C 1.38741 * 120.01555 * 0.56424 * 7 6 5 9 9 O 1.35971 * 119.98513 * 179.72654 * 8 7 6 10 10 C 1.42901 * 116.99992 * 355.51641 * 9 8 7 11 11 H 1.09005 * 109.46860 * 336.86722 * 10 9 8 12 12 C 1.50703 * 109.47375 * 96.86667 * 10 9 8 13 13 H 1.08004 * 119.99487 * 54.29853 * 12 10 9 14 14 C 1.37874 * 120.00154 * 234.30018 * 12 10 9 15 15 N 1.31509 * 119.99818 * 177.77826 * 14 12 10 16 16 Si 1.86799 * 119.99857 * 357.78112 * 14 12 10 17 17 H 1.48497 * 109.47279 * 92.94523 * 16 14 12 18 18 H 1.48504 * 109.47020 * 212.94509 * 16 14 12 19 19 H 1.48504 * 109.47258 * 332.93731 * 16 14 12 20 20 C 1.50698 * 109.47233 * 216.86950 * 10 9 8 21 21 C 1.38238 * 119.99505 * 320.20260 * 20 10 9 22 22 C 1.38241 * 119.99674 * 179.80862 * 21 20 10 23 23 C 1.38241 * 119.99944 * 0.40007 * 22 21 20 24 24 C 1.38234 * 119.99943 * 359.85030 * 23 22 21 25 25 C 1.38231 * 120.00220 * 140.47351 * 20 10 9 26 26 C 1.38707 * 120.02891 * 359.45230 * 8 7 6 27 27 C 1.50694 * 119.98963 * 180.27268 * 26 8 7 28 28 C 1.38104 * 120.01278 * 0.25347 * 26 8 7 29 29 H 1.09001 * 109.46967 * 239.99607 * 1 2 3 30 30 H 1.08987 * 109.46911 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47200 * 120.00216 * 1 2 3 32 32 H 0.96999 * 119.99959 * 4.95187 * 4 2 1 33 33 H 1.08005 * 120.00409 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.98899 * 180.29042 * 7 6 5 35 35 H 0.97003 * 119.99656 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.00487 * 359.97438 * 21 20 10 37 37 H 1.08001 * 120.00056 * 180.23188 * 22 21 20 38 38 H 1.07998 * 119.99878 * 179.83461 * 23 22 21 39 39 H 1.07993 * 120.00185 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00181 * 359.97438 * 25 20 10 41 41 H 1.09000 * 109.47308 * 89.99993 * 27 26 8 42 42 H 1.08998 * 109.47099 * 210.00269 * 27 26 8 43 43 H 1.09001 * 109.47715 * 330.00244 * 27 26 8 44 44 H 1.08000 * 120.00846 * 180.02562 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1673 -0.0005 5 6 3.5781 -1.1696 0.1044 6 6 4.3231 -2.1336 -0.5620 7 6 5.7002 -2.1318 -0.4628 8 6 6.3390 -1.1744 0.3119 9 8 7.6949 -1.1767 0.4136 10 6 8.3914 -2.2503 -0.2222 11 1 7.7197 -3.1009 -0.3383 12 6 8.8744 -1.8029 -1.5778 13 1 9.4780 -0.9119 -1.6689 14 6 8.5456 -2.5308 -2.7016 15 7 8.9302 -2.1166 -3.8891 16 14 7.5540 -4.1054 -2.5374 17 1 6.1094 -3.7991 -2.6933 18 1 7.9727 -5.0660 -3.5897 19 1 7.7919 -4.7029 -1.1989 20 6 9.5716 -2.6541 0.6235 21 6 10.3316 -1.6879 1.2558 22 6 11.4118 -2.0585 2.0347 23 6 11.7370 -3.3948 2.1746 24 6 10.9801 -4.3606 1.5381 25 6 9.8975 -3.9902 0.7623 26 6 5.5954 -0.2115 0.9781 27 6 6.2906 0.8318 1.8144 28 6 4.2183 -0.2084 0.8748 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8899 32 1 1.6987 -2.0057 -0.0734 33 1 3.8257 -2.8815 -1.1617 34 1 6.2800 -2.8786 -0.9849 35 1 8.6992 -2.6290 -4.6797 36 1 10.0798 -0.6437 1.1435 37 1 12.0033 -1.3039 2.5318 38 1 12.5825 -3.6841 2.7810 39 1 11.2344 -5.4045 1.6470 40 1 9.3062 -4.7448 0.2651 41 1 6.5208 1.6991 1.1957 42 1 5.6391 1.1331 2.6347 43 1 7.2147 0.4177 2.2177 44 1 3.6394 0.5416 1.3932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234605637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = -17.175072 kcal Electronic energy + Delta-G solvation = -27171.253503 eV Core-core repulsion = 23439.985833 eV Total energy + Delta-G solvation = -3731.267671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38112 -39.35334 -38.38729 -36.71327 -34.49316 -33.07167 -32.12012 -31.28746 -30.45638 -30.26177 -27.94296 -27.44339 -26.33373 -23.49847 -22.37855 -22.04018 -21.25182 -20.57910 -19.82269 -17.63923 -17.27503 -16.99777 -16.77723 -16.31413 -15.56244 -15.25015 -14.96048 -14.36560 -14.18190 -14.04919 -13.80982 -13.58512 -13.18661 -13.03030 -12.90965 -12.83508 -12.71471 -12.59662 -12.45052 -12.26505 -12.09071 -11.80607 -11.48624 -11.44423 -11.27330 -10.98064 -10.63400 -10.43366 -10.09864 -9.91408 -9.81391 -9.60554 -9.19738 -8.88848 -8.34305 -8.33225 -8.01676 -7.08686 -6.40553 -4.43985 1.73512 1.81016 1.97234 2.01235 2.67013 2.99272 3.01221 3.10488 3.16334 4.05592 4.08955 4.22326 4.48051 4.64035 4.98427 5.01428 5.12201 5.22207 5.31242 5.43860 5.46476 5.55457 5.59555 5.61506 5.71412 5.81536 5.87871 6.03441 6.09142 6.12449 6.17160 6.24567 6.25066 6.37365 6.57914 6.59994 6.66677 6.73289 6.80851 6.98857 7.02978 7.10103 7.20520 7.28756 7.39718 7.47996 7.61177 8.06933 8.16292 8.39177 8.74031 9.18265 10.71442 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.004034 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.748758 B = 6939.756812 C = 8051.273375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.529 6.529 4 N -0.669 5.669 5 C 0.080 3.920 6 C -0.105 4.105 7 C -0.194 4.194 8 C 0.161 3.839 9 O -0.311 6.311 10 C 0.199 3.801 11 H 0.053 0.947 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.086 3.914 15 N -0.870 5.870 16 Si 0.852 3.148 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.256 1.256 20 C -0.038 4.038 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.096 4.096 28 C -0.079 4.079 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.406 0.594 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.271 0.729 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -2.781 10.489 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.291 3.709 3 O -0.404 6.404 4 N -0.315 5.315 5 C -0.012 4.012 6 C -0.125 4.125 7 C -0.213 4.213 8 C 0.113 3.887 9 O -0.224 6.224 10 C 0.145 3.855 11 H 0.071 0.929 12 C -0.558 4.558 13 H 0.106 0.894 14 C -0.120 4.120 15 N -0.506 5.506 16 Si 0.679 3.321 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.181 1.181 20 C -0.038 4.038 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.121 4.121 27 C -0.153 4.153 28 C -0.099 4.099 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.241 0.759 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.346 -1.900 10.379 14.778 hybrid contribution -0.725 -1.621 -0.666 1.896 sum -11.071 -3.520 9.712 15.142 Atomic orbital electron populations 1.21908 0.91295 1.05668 1.04258 1.20924 0.90641 0.83450 0.75837 1.90755 1.70548 1.31209 1.47921 1.43459 1.05459 1.09300 1.73252 1.17400 0.82059 1.00063 1.01688 1.20554 0.93391 0.99535 0.99038 1.21278 0.94505 1.02237 1.03319 1.18830 0.84179 0.92895 0.92776 1.86134 1.13897 1.50263 1.72065 1.19665 0.88127 0.86527 0.91172 0.92936 1.21134 1.34043 1.13034 0.87548 0.89446 1.25039 0.94712 0.97136 0.95097 1.69848 1.44154 1.38554 0.98058 0.87375 0.81487 0.84390 0.78846 1.18774 1.20454 1.18129 1.20084 0.97423 0.92815 0.93512 1.20961 0.94574 0.99803 0.96426 1.21069 0.97635 0.95831 0.99759 1.20925 1.00224 0.93345 1.01619 1.20936 0.95974 0.98781 0.98375 1.20949 0.98394 0.95585 0.99539 1.19101 0.92285 0.98355 1.02395 1.20510 1.00089 0.96786 0.97934 1.20635 0.93022 0.98325 0.97896 0.89303 0.88810 0.89368 0.75918 0.86361 0.85255 0.91864 0.85920 0.86831 0.87045 0.86856 0.86734 0.91562 0.92501 0.91060 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.32 36.01 0.37 -0.85 16 2 C 0.50 6.39 7.68 -10.98 -0.08 6.30 16 3 O -0.53 -9.24 14.83 5.55 0.08 -9.16 16 4 N -0.67 -8.26 5.34 -9.83 -0.05 -8.32 16 5 C 0.08 1.33 6.26 -83.62 -0.52 0.81 16 6 C -0.10 -1.86 9.96 -39.41 -0.39 -2.26 16 7 C -0.19 -4.09 8.98 -39.46 -0.35 -4.44 16 8 C 0.16 3.46 6.65 -39.22 -0.26 3.20 16 9 O -0.31 -7.09 8.12 -19.65 -0.16 -7.25 16 10 C 0.20 4.70 1.95 -29.03 -0.06 4.64 16 11 H 0.05 1.23 2.73 -51.93 -0.14 1.09 16 12 C -0.52 -14.27 9.22 -34.44 -0.32 -14.59 16 13 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 14 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 15 N -0.87 -25.42 13.96 55.43 0.77 -24.65 16 16 Si 0.85 19.69 24.68 -169.99 -4.20 15.50 16 17 H -0.26 -5.80 6.75 56.52 0.38 -5.42 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.26 -5.49 5.22 56.52 0.30 -5.19 16 20 C -0.04 -0.82 4.96 -104.63 -0.52 -1.34 16 21 C -0.10 -1.97 9.35 -39.58 -0.37 -2.34 16 22 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 23 C -0.14 -2.26 10.05 -39.58 -0.40 -2.65 16 24 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.13 -2.49 9.67 -39.58 -0.38 -2.87 16 26 C -0.12 -2.28 5.89 -104.50 -0.62 -2.90 16 27 C -0.10 -1.57 9.79 36.00 0.35 -1.22 16 28 C -0.08 -1.40 8.30 -39.41 -0.33 -1.73 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.68 8.12 -51.94 -0.42 0.26 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.41 3.40 8.82 -40.82 -0.36 3.04 16 33 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.13 2.87 1.74 -52.49 -0.09 2.78 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.42 7.77 -52.49 -0.41 2.01 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.11 2.20 6.93 -52.49 -0.36 1.83 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.07 1.17 7.52 -51.93 -0.39 0.78 16 44 H 0.13 2.25 6.48 -52.49 -0.34 1.91 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -32.83 361.82 -8.45 -41.28 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.58 Total: 12.04 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -4.77 Total: -24.90 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.72 Total: -32.97 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.08 Total: -16.41 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.20 Total: 15.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.83 -8.45 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234605637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.105 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds