Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21283 * 119.99846 * 2 1 4 4 N 1.34784 * 119.99887 * 180.02562 * 2 1 3 5 5 C 1.40106 * 119.99880 * 184.96021 * 4 2 1 6 6 C 1.38870 * 120.01419 * 214.29915 * 5 4 2 7 7 C 1.38062 * 119.98388 * 179.72393 * 6 5 4 8 8 C 1.38741 * 120.01555 * 0.56424 * 7 6 5 9 9 O 1.35971 * 119.98513 * 179.72654 * 8 7 6 10 10 C 1.42901 * 116.99992 * 355.51641 * 9 8 7 11 11 H 1.09005 * 109.46860 * 336.86722 * 10 9 8 12 12 C 1.50703 * 109.47375 * 96.86667 * 10 9 8 13 13 H 1.08004 * 119.99487 * 54.29853 * 12 10 9 14 14 C 1.37874 * 120.00154 * 234.30018 * 12 10 9 15 15 N 1.31509 * 119.99818 * 177.77826 * 14 12 10 16 16 Si 1.86799 * 119.99857 * 357.78112 * 14 12 10 17 17 H 1.48497 * 109.47279 * 92.94523 * 16 14 12 18 18 H 1.48504 * 109.47020 * 212.94509 * 16 14 12 19 19 H 1.48504 * 109.47258 * 332.93731 * 16 14 12 20 20 C 1.50698 * 109.47233 * 216.86950 * 10 9 8 21 21 C 1.38238 * 119.99505 * 320.20260 * 20 10 9 22 22 C 1.38241 * 119.99674 * 179.80862 * 21 20 10 23 23 C 1.38241 * 119.99944 * 0.40007 * 22 21 20 24 24 C 1.38234 * 119.99943 * 359.85030 * 23 22 21 25 25 C 1.38231 * 120.00220 * 140.47351 * 20 10 9 26 26 C 1.38707 * 120.02891 * 359.45230 * 8 7 6 27 27 C 1.50694 * 119.98963 * 180.27268 * 26 8 7 28 28 C 1.38104 * 120.01278 * 0.25347 * 26 8 7 29 29 H 1.09001 * 109.46967 * 239.99607 * 1 2 3 30 30 H 1.08987 * 109.46911 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47200 * 120.00216 * 1 2 3 32 32 H 0.96999 * 119.99959 * 4.95187 * 4 2 1 33 33 H 1.08005 * 120.00409 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.98899 * 180.29042 * 7 6 5 35 35 H 0.97003 * 119.99656 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.00487 * 359.97438 * 21 20 10 37 37 H 1.08001 * 120.00056 * 180.23188 * 22 21 20 38 38 H 1.07998 * 119.99878 * 179.83461 * 23 22 21 39 39 H 1.07993 * 120.00185 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00181 * 359.97438 * 25 20 10 41 41 H 1.09000 * 109.47308 * 89.99993 * 27 26 8 42 42 H 1.08998 * 109.47099 * 210.00269 * 27 26 8 43 43 H 1.09001 * 109.47715 * 330.00244 * 27 26 8 44 44 H 1.08000 * 120.00846 * 180.02562 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1673 -0.0005 5 6 3.5781 -1.1696 0.1044 6 6 4.3231 -2.1336 -0.5620 7 6 5.7002 -2.1318 -0.4628 8 6 6.3390 -1.1744 0.3119 9 8 7.6949 -1.1767 0.4136 10 6 8.3914 -2.2503 -0.2222 11 1 7.7197 -3.1009 -0.3383 12 6 8.8744 -1.8029 -1.5778 13 1 9.4780 -0.9119 -1.6689 14 6 8.5456 -2.5308 -2.7016 15 7 8.9302 -2.1166 -3.8891 16 14 7.5540 -4.1054 -2.5374 17 1 6.1094 -3.7991 -2.6933 18 1 7.9727 -5.0660 -3.5897 19 1 7.7919 -4.7029 -1.1989 20 6 9.5716 -2.6541 0.6235 21 6 10.3316 -1.6879 1.2558 22 6 11.4118 -2.0585 2.0347 23 6 11.7370 -3.3948 2.1746 24 6 10.9801 -4.3606 1.5381 25 6 9.8975 -3.9902 0.7623 26 6 5.5954 -0.2115 0.9781 27 6 6.2906 0.8318 1.8144 28 6 4.2183 -0.2084 0.8748 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8899 32 1 1.6987 -2.0057 -0.0734 33 1 3.8257 -2.8815 -1.1617 34 1 6.2800 -2.8786 -0.9849 35 1 8.6992 -2.6290 -4.6797 36 1 10.0798 -0.6437 1.1435 37 1 12.0033 -1.3039 2.5318 38 1 12.5825 -3.6841 2.7810 39 1 11.2344 -5.4045 1.6470 40 1 9.3062 -4.7448 0.2651 41 1 6.5208 1.6991 1.1957 42 1 5.6391 1.1331 2.6347 43 1 7.2147 0.4177 2.2177 44 1 3.6394 0.5416 1.3932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234605637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = -38.037503 kcal Electronic energy + Delta-G solvation = -27172.158166 eV Core-core repulsion = 23439.985833 eV Total energy + Delta-G solvation = -3732.172333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68971 -40.77257 -39.77433 -38.19095 -35.80877 -34.97944 -33.58287 -32.87239 -31.72563 -31.35266 -29.31756 -29.04253 -27.73994 -25.26677 -23.80726 -23.46602 -22.58401 -21.91677 -21.21868 -19.48529 -18.88157 -18.31978 -18.06389 -17.61238 -16.98699 -16.73855 -16.24333 -15.94242 -15.58987 -15.45519 -15.30378 -14.98211 -14.82339 -14.55497 -14.29474 -14.22930 -14.05978 -13.86908 -13.56683 -13.40649 -13.35725 -13.15661 -12.92970 -12.85829 -12.79242 -12.57558 -12.17273 -11.95454 -11.75588 -11.59536 -11.34737 -11.02347 -10.89595 -10.66181 -9.79519 -9.73915 -9.51581 -8.56959 -8.51009 -6.60907 0.28868 0.36122 0.54489 0.59483 1.13530 1.17195 1.25677 1.61881 2.10650 2.14135 2.44697 2.76556 2.95818 3.04581 3.74898 3.81022 3.89280 4.02143 4.16569 4.20539 4.23016 4.30790 4.31776 4.38213 4.54580 4.60371 4.62779 4.68588 4.77676 4.79293 4.81493 4.86887 4.94162 5.10988 5.13979 5.23249 5.24468 5.26347 5.34948 5.39062 5.55617 5.64823 5.68754 5.81816 5.91463 6.04083 6.21811 6.45132 6.49866 6.71622 7.08371 7.19346 8.65627 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.004034 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.748758 B = 6939.756812 C = 8051.273375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.499 3.501 3 O -0.582 6.582 4 N -0.657 5.657 5 C 0.094 3.906 6 C -0.107 4.107 7 C -0.217 4.217 8 C 0.121 3.879 9 O -0.323 6.323 10 C 0.209 3.791 11 H 0.056 0.944 12 C -0.531 4.531 13 H 0.033 0.967 14 C 0.033 3.967 15 N -0.925 5.925 16 Si 0.909 3.091 17 H -0.245 1.245 18 H -0.273 1.273 19 H -0.233 1.233 20 C -0.074 4.074 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.094 4.094 28 C -0.084 4.084 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.428 0.572 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.274 0.726 36 H 0.105 0.895 37 H 0.145 0.855 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 -5.101 12.686 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.290 3.710 3 O -0.462 6.462 4 N -0.305 5.305 5 C 0.000 4.000 6 C -0.127 4.127 7 C -0.236 4.236 8 C 0.074 3.926 9 O -0.237 6.237 10 C 0.155 3.845 11 H 0.073 0.927 12 C -0.568 4.568 13 H 0.052 0.948 14 C -0.168 4.168 15 N -0.563 5.563 16 Si 0.732 3.268 17 H -0.170 1.170 18 H -0.198 1.198 19 H -0.157 1.157 20 C -0.074 4.074 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.163 4.163 26 C -0.128 4.128 27 C -0.151 4.151 28 C -0.104 4.104 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.268 0.732 33 H 0.167 0.833 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.420 -4.244 12.600 18.195 hybrid contribution -0.118 -0.768 -1.245 1.467 sum -12.538 -5.012 11.356 17.643 Atomic orbital electron populations 1.21935 0.86295 1.06583 1.06960 1.22035 0.92839 0.82317 0.73849 1.90742 1.72047 1.33102 1.50283 1.43483 1.03588 1.10807 1.72604 1.17511 0.84296 0.98500 0.99667 1.20803 0.92232 1.00469 0.99155 1.21370 0.96052 1.02277 1.03892 1.19208 0.83686 0.94781 0.94957 1.86063 1.15123 1.50272 1.72229 1.19430 0.88924 0.86341 0.89823 0.92689 1.21224 1.33504 1.11592 0.90470 0.94820 1.25879 0.95780 1.00859 0.94294 1.70004 1.46560 1.40639 0.99062 0.86442 0.80529 0.79808 0.80028 1.17014 1.19844 1.15681 1.20107 0.97482 0.94421 0.95435 1.20995 0.96193 0.98839 0.98007 1.21429 0.96415 0.97622 0.98515 1.21452 1.00549 0.92350 1.00511 1.21379 0.94416 1.01055 0.96668 1.21125 0.99916 0.94542 1.00720 1.19414 0.93009 0.98142 1.02186 1.20531 1.00239 0.95896 0.98399 1.20806 0.92500 0.98854 0.98283 0.86243 0.88891 0.86679 0.73244 0.83323 0.86608 0.91679 0.87686 0.83753 0.82635 0.83114 0.86752 0.91962 0.89655 0.91792 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.32 71.24 0.74 -0.88 16 2 C 0.50 11.36 7.68 87.66 0.67 12.04 16 3 O -0.58 -19.77 14.83 -3.04 -0.05 -19.81 16 4 N -0.66 -14.31 5.34 -303.39 -1.62 -15.93 16 5 C 0.09 2.99 6.26 38.11 0.24 3.23 16 6 C -0.11 -3.65 9.96 22.38 0.22 -3.43 16 7 C -0.22 -9.25 8.98 22.35 0.20 -9.05 16 8 C 0.12 5.40 6.65 22.50 0.15 5.55 16 9 O -0.32 -15.80 8.12 -93.22 -0.76 -16.56 16 10 C 0.21 10.44 1.95 29.10 0.06 10.50 16 11 H 0.06 2.67 2.73 -2.38 -0.01 2.66 16 12 C -0.53 -31.36 9.22 25.60 0.24 -31.12 16 13 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 14 C 0.03 1.90 5.47 84.65 0.46 2.36 16 15 N -0.92 -57.30 13.96 21.45 0.30 -57.00 16 16 Si 0.91 41.54 24.68 68.60 1.69 43.23 16 17 H -0.25 -10.44 6.75 99.48 0.67 -9.77 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.23 -9.64 5.22 99.48 0.52 -9.12 16 20 C -0.07 -3.32 4.96 -19.87 -0.10 -3.42 16 21 C -0.12 -5.02 9.35 22.27 0.21 -4.81 16 22 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 23 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 24 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 25 C -0.14 -5.64 9.67 22.27 0.22 -5.42 16 26 C -0.13 -4.93 5.89 -19.79 -0.12 -5.04 16 27 C -0.09 -3.16 9.79 71.23 0.70 -2.47 16 28 C -0.08 -2.97 8.30 22.38 0.19 -2.78 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.43 5.44 8.82 -92.71 -0.82 4.62 16 33 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.12 5.20 1.74 -2.91 -0.01 5.19 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.10 4.53 7.77 -2.91 -0.02 4.50 16 37 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 40 H 0.11 4.32 6.93 -2.91 -0.02 4.30 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 43 H 0.06 2.21 7.52 -2.39 -0.02 2.19 16 44 H 0.14 4.67 6.48 -2.91 -0.02 4.65 16 Total: -1.00 -79.97 361.82 4.31 -75.66 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.00 Total: 35.66 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 4.74 Total: -45.24 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.32 Total: -72.93 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.80 Total: -36.37 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.69 Total: 43.23 kcal Total: -79.97 4.31 -75.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234605637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.618 kcal (2) G-P(sol) polarization free energy of solvation -79.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds