Wall clock time and date at job start Tue Mar 31 2020 13:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38859 * 119.25076 * 2 1 4 4 C 1.36892 * 119.79823 * 179.76387 * 3 2 1 5 5 C 1.41125 * 118.39090 * 0.49898 * 4 3 2 6 6 C 1.40898 * 120.71525 * 179.72805 * 5 4 3 7 7 H 1.07996 * 119.99755 * 151.66231 * 6 5 4 8 8 C 1.40071 * 119.99807 * 331.65972 * 6 5 4 9 9 N 1.30773 * 120.00388 * 348.24471 * 8 6 5 10 10 Si 1.86803 * 119.99797 * 168.24121 * 8 6 5 11 11 H 1.48503 * 109.47062 * 59.99851 * 10 8 6 12 12 H 1.48497 * 109.47371 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47139 * 300.00428 * 10 8 6 14 14 C 1.41850 * 118.56507 * 359.74542 * 5 4 3 15 15 C 1.47842 * 119.99098 * 180.02562 * 14 5 4 16 16 C 1.39791 * 120.08080 * 316.13244 * 15 14 5 17 17 C 1.38024 * 120.14935 * 179.76376 * 16 15 14 18 18 C 1.38128 * 120.31442 * 0.51579 * 17 16 15 19 19 C 1.39736 * 120.15256 * 359.73636 * 18 17 16 20 20 C 1.47751 * 120.07713 * 180.02562 * 19 18 17 21 21 O 1.21466 * 119.99737 * 179.97438 * 20 19 18 22 22 O 1.34702 * 119.99791 * 359.97438 * 20 19 18 23 23 C 1.45199 * 116.99965 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47317 * 89.99833 * 23 22 20 25 25 C 1.53007 * 109.47216 * 209.99855 * 23 22 20 26 26 C 1.39370 * 119.84819 * 0.02562 * 19 18 17 27 27 N 1.31753 * 119.24497 * 180.27309 * 2 1 3 28 28 H 1.09001 * 109.47365 * 269.73115 * 1 2 3 29 29 H 1.09003 * 109.47613 * 149.72854 * 1 2 3 30 30 H 1.08998 * 109.47083 * 29.72639 * 1 2 3 31 31 H 1.07996 * 120.10443 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.80548 * 180.24742 * 4 3 2 33 33 H 0.97000 * 120.00090 * 179.97438 * 9 8 6 34 34 H 1.07997 * 119.92504 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.84666 * 180.25222 * 17 16 15 36 36 H 1.07993 * 119.92678 * 179.72497 * 18 17 16 37 37 H 1.09002 * 109.47327 * 329.99692 * 23 22 20 38 38 H 1.09000 * 109.47134 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.46827 * 299.99725 * 24 23 22 40 40 H 1.08996 * 109.47448 * 60.00221 * 24 23 22 41 41 H 1.08996 * 109.46806 * 59.99524 * 25 23 22 42 42 H 1.08999 * 109.46748 * 179.97438 * 25 23 22 43 43 H 1.09005 * 109.46500 * 299.99445 * 25 23 22 44 44 H 1.07994 * 120.14973 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2115 0.0000 4 6 3.5543 1.2246 0.0049 5 6 4.2372 -0.0104 -0.0010 6 6 5.6455 -0.0540 -0.0021 7 1 6.1599 -0.8955 0.4379 8 6 6.3782 0.9939 -0.5738 9 7 5.7719 1.8932 -1.3045 10 14 8.2214 1.1071 -0.2924 11 1 8.8782 -0.1174 -0.8162 12 1 8.7579 2.2980 -0.9989 13 1 8.4933 1.2309 1.1623 14 6 3.4751 -1.2068 -0.0061 15 6 4.1581 -2.5180 -0.0118 16 6 5.2552 -2.7329 -0.8510 17 6 5.8969 -3.9549 -0.8538 18 6 5.4542 -4.9768 -0.0366 19 6 4.3555 -4.7777 0.8035 20 6 3.8837 -5.8717 1.6773 21 8 2.9288 -5.6970 2.4074 22 8 4.5126 -7.0629 1.6643 23 6 3.9951 -8.0913 2.5491 24 6 2.9298 -8.9075 1.8143 25 6 5.1365 -9.0140 2.9813 26 6 3.7057 -3.5449 0.8153 27 7 2.1506 -1.1496 -0.0055 28 1 -0.3634 -0.0048 1.0276 29 1 -0.3634 -0.8875 -0.5180 30 1 -0.3633 0.8924 -0.5096 31 1 1.6350 2.1407 0.0004 32 1 4.0984 2.1574 0.0090 33 1 6.2793 2.6191 -1.7001 34 1 5.6041 -1.9397 -1.4954 35 1 6.7466 -4.1143 -1.5012 36 1 5.9582 -5.9318 -0.0472 37 1 3.5523 -7.6245 3.4290 38 1 2.5410 -9.6792 2.4787 39 1 2.1167 -8.2501 1.5065 40 1 3.3725 -9.3743 0.9345 41 1 5.8953 -8.4325 3.5047 42 1 4.7479 -9.7857 3.6458 43 1 5.5791 -9.4809 2.1013 44 1 2.8558 -3.3858 1.4624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240947290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:29 Heat of formation + Delta-G solvation = -54.587360 kcal Electronic energy + Delta-G solvation = -26597.321543 eV Core-core repulsion = 22864.431554 eV Total energy + Delta-G solvation = -3732.889989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39200 -39.04939 -37.80651 -36.51922 -34.42679 -33.29106 -32.32230 -31.00102 -30.64660 -29.36175 -27.82740 -27.46450 -24.59693 -24.34243 -22.77019 -21.59303 -20.83555 -20.66772 -19.93937 -17.68223 -17.42940 -16.74541 -15.89246 -15.71865 -15.40608 -14.95248 -14.68516 -14.34581 -14.11377 -13.87846 -13.63517 -13.35978 -13.22101 -13.11273 -12.62029 -12.49847 -12.39854 -12.19823 -11.94863 -11.86472 -11.67202 -11.57484 -11.52194 -11.24039 -11.09631 -11.04515 -11.01538 -10.75441 -10.58924 -10.54418 -10.18586 -9.90039 -9.48301 -8.71907 -8.50677 -8.16275 -8.11442 -7.39895 -6.95952 -4.60181 1.18046 1.75099 2.52331 2.75125 2.79925 2.94087 2.96689 3.03686 3.10551 3.74345 4.32148 4.46342 4.64218 4.77200 4.84090 4.99629 5.24143 5.32043 5.33037 5.48409 5.52336 5.55944 5.59925 5.64438 5.84589 5.94447 5.96201 5.98872 6.00929 6.04756 6.25205 6.32604 6.38271 6.48598 6.54095 6.57687 6.67419 6.76268 6.85558 6.93496 6.96784 7.14525 7.26697 7.39086 7.59879 7.75030 7.83442 8.00265 8.27900 8.50919 8.57124 9.49915 9.91888 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003693 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.752430 B = 7579.819266 C = 9425.390354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.003 4.003 3 C -0.142 4.142 4 C -0.124 4.124 5 C 0.086 3.914 6 C -0.443 4.443 7 H 0.088 0.912 8 C 0.074 3.926 9 N -0.788 5.788 10 Si 0.911 3.089 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.261 1.261 14 C 0.013 3.987 15 C 0.013 3.987 16 C -0.056 4.056 17 C -0.143 4.143 18 C -0.082 4.082 19 C -0.141 4.141 20 C 0.513 3.487 21 O -0.511 6.511 22 O -0.351 6.351 23 C 0.079 3.921 24 C -0.170 4.170 25 C -0.148 4.148 26 C -0.043 4.043 27 N -0.448 5.448 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.286 0.714 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -11.917 2.397 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 C -0.163 4.163 4 C -0.150 4.150 5 C 0.081 3.919 6 C -0.472 4.472 7 H 0.106 0.894 8 C -0.145 4.145 9 N -0.412 5.412 10 Si 0.735 3.265 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.186 1.186 14 C -0.125 4.125 15 C 0.012 3.988 16 C -0.075 4.075 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.359 3.641 21 O -0.401 6.401 22 O -0.268 6.268 23 C 0.024 3.976 24 C -0.227 4.227 25 C -0.205 4.205 26 C -0.062 4.062 27 N -0.157 5.157 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.960 -12.443 2.474 12.723 hybrid contribution 1.198 1.043 0.136 1.594 sum 2.157 -11.399 2.610 11.892 Atomic orbital electron populations 1.20300 0.91439 1.00987 1.00566 1.20277 0.94912 0.88459 1.10871 1.21282 0.95477 0.97175 1.02337 1.21445 0.92578 0.98897 1.02047 1.18307 0.94088 0.90736 0.88758 1.19580 0.90971 1.04741 1.31906 0.89377 1.25997 1.01689 0.94093 0.92748 1.69727 1.38946 1.10753 1.21806 0.86285 0.81217 0.78984 0.80025 1.18466 1.20126 1.18584 1.19347 0.88423 0.90954 1.13776 1.18356 0.94249 0.91778 0.94379 1.21814 0.93303 0.96412 0.95959 1.20995 1.01073 0.93347 1.00694 1.21271 0.94872 0.99109 0.94768 1.18889 1.00904 0.92712 1.01710 1.21388 0.80307 0.81803 0.80557 1.90795 1.27112 1.82239 1.39918 1.86615 1.57205 1.21896 1.61128 1.22686 0.95205 0.86785 0.92915 1.22206 0.98744 1.00391 1.01350 1.21879 0.97910 0.98772 1.01987 1.21390 0.97844 0.90202 0.96787 1.66842 1.09536 1.29388 1.09903 0.93051 0.92513 0.92836 0.88197 0.85327 0.90281 0.84049 0.85761 0.85526 0.89786 0.90913 0.91831 0.91572 0.91663 0.90563 0.91417 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.15 36.00 0.37 -1.00 16 2 C 0.00 -0.07 6.79 -82.40 -0.56 -0.63 16 3 C -0.14 -3.21 9.64 -39.84 -0.38 -3.60 16 4 C -0.12 -3.03 8.72 -38.97 -0.34 -3.37 16 5 C 0.09 2.14 5.54 -106.41 -0.59 1.55 16 6 C -0.44 -10.58 6.73 -37.89 -0.25 -10.83 16 7 H 0.09 2.05 6.47 -52.49 -0.34 1.71 16 8 C 0.07 1.68 5.26 -17.32 -0.09 1.59 16 9 N -0.79 -18.49 10.91 55.55 0.61 -17.88 16 10 Si 0.91 17.10 29.58 -169.99 -5.03 12.07 16 11 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 12 H -0.28 -5.09 7.11 56.52 0.40 -4.68 16 13 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 14 C 0.01 0.31 6.43 -82.24 -0.53 -0.22 16 15 C 0.01 0.29 5.25 -104.96 -0.55 -0.26 16 16 C -0.06 -1.09 7.84 -39.08 -0.31 -1.39 16 17 C -0.14 -2.30 10.02 -39.70 -0.40 -2.70 16 18 C -0.08 -1.29 9.61 -39.06 -0.38 -1.66 16 19 C -0.14 -2.55 5.87 -105.03 -0.62 -3.17 16 20 C 0.51 8.95 7.87 34.62 0.27 9.22 16 21 O -0.51 -10.03 15.60 -19.24 -0.30 -10.33 16 22 O -0.35 -5.10 9.12 -40.50 -0.37 -5.47 16 23 C 0.08 0.92 3.19 -26.73 -0.09 0.83 16 24 C -0.17 -1.72 9.55 37.16 0.35 -1.36 16 25 C -0.15 -1.25 9.57 37.16 0.36 -0.89 16 26 C -0.04 -0.89 9.20 -38.73 -0.36 -1.25 16 27 N -0.45 -10.95 10.05 -5.45 -0.05 -11.00 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.13 3.17 6.33 -52.49 -0.33 2.84 16 33 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 34 H 0.14 2.86 6.75 -52.49 -0.35 2.50 16 35 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.13 1.67 7.60 -52.49 -0.40 1.27 16 37 H 0.08 1.06 7.16 -51.93 -0.37 0.69 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.13 2.89 7.64 -52.49 -0.40 2.49 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -27.71 373.36 -9.59 -37.30 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.98 Total: 8.83 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -4.09 Total: -19.15 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: 0.55 Total: -28.88 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.67 Total: -15.80 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.71 -9.59 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240947290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.292 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds