Wall clock time and date at job start Tue Mar 31 2020 13:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38859 * 119.25076 * 2 1 4 4 C 1.36892 * 119.79823 * 179.76387 * 3 2 1 5 5 C 1.41125 * 118.39090 * 0.49898 * 4 3 2 6 6 C 1.40898 * 120.71525 * 179.72805 * 5 4 3 7 7 H 1.07996 * 119.99755 * 151.66231 * 6 5 4 8 8 C 1.40071 * 119.99807 * 331.65972 * 6 5 4 9 9 N 1.30773 * 120.00388 * 348.24471 * 8 6 5 10 10 Si 1.86803 * 119.99797 * 168.24121 * 8 6 5 11 11 H 1.48503 * 109.47062 * 59.99851 * 10 8 6 12 12 H 1.48497 * 109.47371 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47139 * 300.00428 * 10 8 6 14 14 C 1.41850 * 118.56507 * 359.74542 * 5 4 3 15 15 C 1.47842 * 119.99098 * 180.02562 * 14 5 4 16 16 C 1.39791 * 120.08080 * 316.13244 * 15 14 5 17 17 C 1.38024 * 120.14935 * 179.76376 * 16 15 14 18 18 C 1.38128 * 120.31442 * 0.51579 * 17 16 15 19 19 C 1.39736 * 120.15256 * 359.73636 * 18 17 16 20 20 C 1.47751 * 120.07713 * 180.02562 * 19 18 17 21 21 O 1.21466 * 119.99737 * 179.97438 * 20 19 18 22 22 O 1.34702 * 119.99791 * 359.97438 * 20 19 18 23 23 C 1.45199 * 116.99965 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47317 * 89.99833 * 23 22 20 25 25 C 1.53007 * 109.47216 * 209.99855 * 23 22 20 26 26 C 1.39370 * 119.84819 * 0.02562 * 19 18 17 27 27 N 1.31753 * 119.24497 * 180.27309 * 2 1 3 28 28 H 1.09001 * 109.47365 * 269.73115 * 1 2 3 29 29 H 1.09003 * 109.47613 * 149.72854 * 1 2 3 30 30 H 1.08998 * 109.47083 * 29.72639 * 1 2 3 31 31 H 1.07996 * 120.10443 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.80548 * 180.24742 * 4 3 2 33 33 H 0.97000 * 120.00090 * 179.97438 * 9 8 6 34 34 H 1.07997 * 119.92504 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.84666 * 180.25222 * 17 16 15 36 36 H 1.07993 * 119.92678 * 179.72497 * 18 17 16 37 37 H 1.09002 * 109.47327 * 329.99692 * 23 22 20 38 38 H 1.09000 * 109.47134 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.46827 * 299.99725 * 24 23 22 40 40 H 1.08996 * 109.47448 * 60.00221 * 24 23 22 41 41 H 1.08996 * 109.46806 * 59.99524 * 25 23 22 42 42 H 1.08999 * 109.46748 * 179.97438 * 25 23 22 43 43 H 1.09005 * 109.46500 * 299.99445 * 25 23 22 44 44 H 1.07994 * 120.14973 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2115 0.0000 4 6 3.5543 1.2246 0.0049 5 6 4.2372 -0.0104 -0.0010 6 6 5.6455 -0.0540 -0.0021 7 1 6.1599 -0.8955 0.4379 8 6 6.3782 0.9939 -0.5738 9 7 5.7719 1.8932 -1.3045 10 14 8.2214 1.1071 -0.2924 11 1 8.8782 -0.1174 -0.8162 12 1 8.7579 2.2980 -0.9989 13 1 8.4933 1.2309 1.1623 14 6 3.4751 -1.2068 -0.0061 15 6 4.1581 -2.5180 -0.0118 16 6 5.2552 -2.7329 -0.8510 17 6 5.8969 -3.9549 -0.8538 18 6 5.4542 -4.9768 -0.0366 19 6 4.3555 -4.7777 0.8035 20 6 3.8837 -5.8717 1.6773 21 8 2.9288 -5.6970 2.4074 22 8 4.5126 -7.0629 1.6643 23 6 3.9951 -8.0913 2.5491 24 6 2.9298 -8.9075 1.8143 25 6 5.1365 -9.0140 2.9813 26 6 3.7057 -3.5449 0.8153 27 7 2.1506 -1.1496 -0.0055 28 1 -0.3634 -0.0048 1.0276 29 1 -0.3634 -0.8875 -0.5180 30 1 -0.3633 0.8924 -0.5096 31 1 1.6350 2.1407 0.0004 32 1 4.0984 2.1574 0.0090 33 1 6.2793 2.6191 -1.7001 34 1 5.6041 -1.9397 -1.4954 35 1 6.7466 -4.1143 -1.5012 36 1 5.9582 -5.9318 -0.0472 37 1 3.5523 -7.6245 3.4290 38 1 2.5410 -9.6792 2.4787 39 1 2.1167 -8.2501 1.5065 40 1 3.3725 -9.3743 0.9345 41 1 5.8953 -8.4325 3.5047 42 1 4.7479 -9.7857 3.6458 43 1 5.5791 -9.4809 2.1013 44 1 2.8558 -3.3858 1.4624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240947290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:28 Heat of formation + Delta-G solvation = -66.573674 kcal Electronic energy + Delta-G solvation = -26597.841309 eV Core-core repulsion = 22864.431554 eV Total energy + Delta-G solvation = -3733.409755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70707 -40.69651 -39.31596 -37.80209 -36.16992 -34.38766 -33.79538 -32.74975 -32.10602 -30.92938 -29.51766 -28.19225 -26.27511 -25.69747 -24.40588 -22.90824 -22.30330 -22.19219 -21.30727 -19.32757 -18.92919 -18.05645 -17.42255 -17.11235 -16.82266 -16.57073 -16.14794 -15.68211 -15.62441 -15.23872 -14.96851 -14.75631 -14.59178 -14.22475 -14.20595 -13.86064 -13.56993 -13.30076 -13.22033 -13.14771 -13.13326 -13.07372 -12.79075 -12.71965 -12.65452 -12.58967 -12.31364 -12.09125 -11.90525 -11.68899 -11.60005 -11.47208 -11.16839 -10.40637 -9.98429 -9.95388 -9.82535 -9.12307 -8.67339 -6.40680 -0.26362 0.19987 0.84283 1.09775 1.40638 1.51164 1.53409 1.55571 1.58783 2.17815 2.69392 2.87850 3.58804 3.64453 3.73080 3.82062 3.95286 4.01833 4.14511 4.15124 4.34679 4.42107 4.44654 4.56913 4.61496 4.66351 4.73475 4.76433 4.85990 4.91715 4.93841 4.96084 5.00306 5.06837 5.11866 5.17817 5.21726 5.23121 5.30573 5.36339 5.41968 5.53237 5.68772 5.79148 5.92398 6.01126 6.05444 6.47832 6.68345 6.72527 6.77614 7.69891 8.23352 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003693 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.752430 B = 7579.819266 C = 9425.390354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 C -0.147 4.147 4 C -0.147 4.147 5 C 0.057 3.943 6 C -0.459 4.459 7 H 0.088 0.912 8 C 0.040 3.960 9 N -0.817 5.817 10 Si 0.978 3.022 11 H -0.248 1.248 12 H -0.268 1.268 13 H -0.264 1.264 14 C -0.003 4.003 15 C -0.015 4.015 16 C -0.064 4.064 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.147 4.147 20 C 0.518 3.482 21 O -0.542 6.542 22 O -0.343 6.343 23 C 0.067 3.933 24 C -0.167 4.167 25 C -0.141 4.141 26 C -0.058 4.058 27 N -0.472 5.472 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.293 0.707 34 H 0.128 0.872 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -14.176 2.052 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.160 4.160 3 C -0.167 4.167 4 C -0.173 4.173 5 C 0.053 3.947 6 C -0.488 4.488 7 H 0.106 0.894 8 C -0.177 4.177 9 N -0.441 5.441 10 Si 0.798 3.202 11 H -0.172 1.172 12 H -0.193 1.193 13 H -0.189 1.189 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.078 4.078 19 C -0.148 4.148 20 C 0.365 3.635 21 O -0.434 6.434 22 O -0.260 6.260 23 C 0.012 3.988 24 C -0.224 4.224 25 C -0.198 4.198 26 C -0.078 4.078 27 N -0.181 5.181 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.146 0.854 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.874 -14.720 2.121 15.147 hybrid contribution 0.541 1.631 0.260 1.738 sum 3.416 -13.088 2.381 13.735 Atomic orbital electron populations 1.20349 0.88267 1.02267 1.01840 1.21053 0.97187 0.88107 1.09691 1.21578 0.95056 0.98489 1.01548 1.21512 0.93602 0.98547 1.03655 1.18654 0.95132 0.91228 0.89727 1.19691 0.90775 1.05600 1.32687 0.89446 1.26772 1.05879 0.93194 0.91833 1.69777 1.40796 1.11288 1.22268 0.85280 0.75719 0.79574 0.79595 1.17195 1.19269 1.18883 1.19844 0.88709 0.92266 1.13277 1.18398 0.95696 0.91188 0.96265 1.21789 0.93058 0.97727 0.95684 1.21391 1.01179 0.91525 1.00317 1.21671 0.93166 1.00397 0.92517 1.19019 1.01457 0.91984 1.02346 1.21272 0.79841 0.82538 0.79860 1.90781 1.28524 1.82930 1.41176 1.86589 1.56653 1.21201 1.61587 1.23116 0.97125 0.86444 0.92067 1.22215 0.97537 1.00304 1.02315 1.21901 0.96600 0.98450 1.02857 1.21160 0.97942 0.91525 0.97129 1.66958 1.09906 1.30369 1.10873 0.91659 0.92514 0.90244 0.85415 0.86218 0.89584 0.85361 0.81542 0.81643 0.91359 0.88291 0.94360 0.90331 0.91868 0.88047 0.90320 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.50 10.15 71.23 0.72 -1.77 16 2 C -0.02 -0.87 6.79 42.72 0.29 -0.58 16 3 C -0.15 -6.79 9.64 22.10 0.21 -6.58 16 4 C -0.15 -7.54 8.72 22.66 0.20 -7.34 16 5 C 0.06 3.00 5.54 -21.03 -0.12 2.88 16 6 C -0.46 -22.66 6.73 23.37 0.16 -22.51 16 7 H 0.09 4.19 6.47 -2.91 -0.02 4.17 16 8 C 0.04 1.83 5.26 85.30 0.45 2.28 16 9 N -0.82 -39.17 10.91 21.85 0.24 -38.93 16 10 Si 0.98 34.70 29.58 68.60 2.03 36.73 16 11 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 12 H -0.27 -9.08 7.11 99.48 0.71 -8.38 16 13 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 14 C 0.00 -0.18 6.43 42.47 0.27 0.10 16 15 C -0.01 -0.66 5.25 -20.08 -0.11 -0.77 16 16 C -0.06 -2.48 7.84 22.59 0.18 -2.30 16 17 C -0.13 -3.74 10.02 22.19 0.22 -3.51 16 18 C -0.06 -1.71 9.61 22.61 0.22 -1.49 16 19 C -0.15 -5.27 5.87 -20.13 -0.12 -5.39 16 20 C 0.52 17.95 7.87 70.34 0.55 18.50 16 21 O -0.54 -21.94 15.60 19.95 0.31 -21.63 16 22 O -0.34 -9.36 9.12 -56.12 -0.51 -9.87 16 23 C 0.07 1.43 3.19 30.60 0.10 1.53 16 24 C -0.17 -3.06 9.55 71.98 0.69 -2.37 16 25 C -0.14 -1.93 9.57 71.98 0.69 -1.24 16 26 C -0.06 -2.51 9.20 22.82 0.21 -2.30 16 27 N -0.47 -24.17 10.05 -171.15 -1.72 -25.89 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 31 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 32 H 0.12 6.20 6.33 -2.91 -0.02 6.18 16 33 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 34 H 0.13 5.30 6.75 -2.91 -0.02 5.28 16 35 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.17 3.53 7.60 -2.91 -0.02 3.51 16 37 H 0.07 1.69 7.16 -2.39 -0.02 1.68 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.11 5.01 7.64 -2.91 -0.02 4.99 16 Total: -1.00 -64.52 373.36 6.18 -58.35 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 1.01 Total: 34.11 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.82 Total: -32.86 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.48 Total: -64.82 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.20 Total: -31.50 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Total: -64.52 6.18 -58.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240947290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.227 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds