Wall clock time and date at job start Tue Mar 31 2020 13:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31261 * 119.80479 * 2 1 4 4 C 1.33009 * 121.73086 * 180.02562 * 3 2 1 5 5 C 1.47982 * 119.45373 * 179.97438 * 4 3 2 6 6 C 1.39726 * 120.07267 * 185.01927 * 5 4 3 7 7 C 1.38047 * 120.15584 * 179.97438 * 6 5 4 8 8 C 1.38116 * 120.30344 * 359.97438 * 7 6 5 9 9 C 1.39728 * 120.14330 * 359.97438 * 8 7 6 10 10 C 1.47743 * 120.07988 * 180.02562 * 9 8 7 11 11 O 1.21472 * 120.00295 * 179.97438 * 10 9 8 12 12 O 1.34714 * 120.00247 * 359.97438 * 10 9 8 13 13 C 1.45194 * 117.00447 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47489 * 149.99841 * 13 12 10 15 15 C 1.53002 * 109.47017 * 270.00157 * 13 12 10 16 16 C 1.39332 * 120.06862 * 4.74463 * 5 4 3 17 17 C 1.39895 * 121.09806 * 359.97438 * 4 3 2 18 18 C 1.36609 * 119.46568 * 359.97438 * 17 4 3 19 19 C 1.40948 * 119.79260 * 179.97438 * 2 1 3 20 20 C 1.41057 * 120.55833 * 0.27850 * 19 2 1 21 21 H 1.07992 * 119.99958 * 334.49779 * 20 19 2 22 22 C 1.40028 * 119.99803 * 154.49769 * 20 19 2 23 23 N 1.30785 * 120.00400 * 343.81085 * 22 20 19 24 24 Si 1.86807 * 119.99734 * 163.81365 * 22 20 19 25 25 H 1.48493 * 109.47142 * 89.99573 * 24 22 20 26 26 H 1.48500 * 109.46938 * 209.99988 * 24 22 20 27 27 H 1.48504 * 109.46766 * 329.99885 * 24 22 20 28 28 H 1.09000 * 109.47682 * 270.00882 * 1 2 3 29 29 H 1.09009 * 109.46908 * 30.00043 * 1 2 3 30 30 H 1.09003 * 109.47551 * 150.00196 * 1 2 3 31 31 H 1.07995 * 119.92354 * 359.95684 * 6 5 4 32 32 H 1.07997 * 119.85006 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.92675 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47123 * 29.99550 * 13 12 10 35 35 H 1.09008 * 109.46731 * 59.99964 * 14 13 12 36 36 H 1.08997 * 109.46998 * 179.97438 * 14 13 12 37 37 H 1.09000 * 109.47123 * 300.00361 * 14 13 12 38 38 H 1.09004 * 109.46679 * 299.99666 * 15 13 12 39 39 H 1.09000 * 109.47628 * 59.99801 * 15 13 12 40 40 H 1.08998 * 109.46953 * 179.97438 * 15 13 12 41 41 H 1.07995 * 120.15030 * 359.97438 * 16 5 4 42 42 H 1.07995 * 120.26150 * 179.97438 * 17 4 3 43 43 H 1.07997 * 120.78892 * 179.97438 * 18 17 4 44 44 H 0.97000 * 120.00076 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1390 0.0000 4 6 3.4888 1.1837 -0.0005 5 6 4.1727 2.4960 -0.0011 6 6 5.5644 2.5601 -0.1074 7 6 6.2042 3.7834 -0.1086 8 6 5.4745 4.9516 -0.0054 9 6 4.0822 4.9021 0.1005 10 6 3.3030 6.1526 0.2102 11 8 2.0925 6.1080 0.3017 12 8 3.9349 7.3423 0.2088 13 6 3.1060 8.5292 0.3204 14 6 3.8915 9.6353 1.0277 15 6 2.7035 9.0034 -1.0775 16 6 3.4298 3.6705 0.0987 17 6 4.2512 0.0108 -0.0005 18 6 3.6202 -1.2009 0.0005 19 6 2.2073 -1.2232 0.0005 20 6 1.5096 -2.4491 -0.0048 21 1 0.5072 -2.5015 0.3935 22 6 2.1167 -3.5979 -0.5266 23 7 3.1768 -3.4904 -1.2850 24 14 1.4123 -5.2843 -0.1397 25 1 0.4070 -5.6491 -1.1699 26 1 2.5059 -6.2889 -0.1375 27 1 0.7640 -5.2552 1.1961 28 1 -0.3634 0.0002 1.0276 29 1 -0.3633 0.8901 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 6.1410 1.6506 -0.1885 32 1 7.2801 3.8272 -0.1906 33 1 5.9813 5.9053 -0.0074 34 1 2.2107 8.2943 0.8961 35 1 4.7868 9.8702 0.4519 36 1 3.2694 10.5264 1.1111 37 1 4.1783 9.2974 2.0236 38 1 3.5988 9.2384 -1.6532 39 1 2.1438 8.2155 -1.5814 40 1 2.0809 9.8942 -0.9937 41 1 2.3535 3.6265 0.1762 42 1 5.3299 0.0628 -0.0014 43 1 4.1877 -2.1197 0.0001 44 1 3.5975 -4.2863 -1.6461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240948498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:32 Heat of formation + Delta-G solvation = -54.644155 kcal Electronic energy + Delta-G solvation = -26009.094893 eV Core-core repulsion = 22276.202442 eV Total energy + Delta-G solvation = -3732.892452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47672 -39.08397 -37.94606 -36.60609 -34.40318 -33.33594 -32.41371 -31.18648 -30.72902 -29.70791 -27.51031 -27.05602 -25.31155 -24.46727 -22.67247 -21.76527 -20.97174 -20.53932 -19.79790 -17.81920 -17.46112 -16.90770 -15.96400 -15.84510 -15.62555 -14.90405 -14.86746 -14.35005 -14.20564 -13.69249 -13.62790 -13.42414 -13.34556 -13.22619 -12.69590 -12.54610 -12.43961 -12.28800 -11.95908 -11.89051 -11.76753 -11.68767 -11.38916 -11.25070 -11.16130 -11.09351 -10.97690 -10.78571 -10.65490 -10.60653 -10.26268 -9.89261 -9.60034 -8.80407 -8.70300 -8.33656 -8.13461 -7.33948 -7.03968 -4.61178 0.98480 1.54710 2.48501 2.68330 2.80410 2.86745 2.90911 2.95454 3.15605 3.68843 4.10923 4.54577 4.59183 4.72172 4.74028 4.94822 5.13547 5.16478 5.28779 5.40239 5.47829 5.49075 5.54462 5.55423 5.68093 5.79620 5.80764 5.94397 5.94815 6.12841 6.21276 6.30906 6.44055 6.50111 6.58671 6.60758 6.66396 6.68910 6.76606 6.84766 6.95723 7.10852 7.19760 7.25805 7.60100 7.71081 7.80880 7.91813 8.24222 8.44477 8.54873 9.51111 9.81657 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.002460 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.555539 B =11381.208118 C =12244.241728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.012 3.988 3 N -0.444 5.444 4 C -0.008 4.008 5 C 0.012 3.988 6 C -0.100 4.100 7 C -0.129 4.129 8 C -0.095 4.095 9 C -0.129 4.129 10 C 0.511 3.489 11 O -0.506 6.506 12 O -0.351 6.351 13 C 0.079 3.921 14 C -0.148 4.148 15 C -0.170 4.170 16 C -0.047 4.047 17 C -0.123 4.123 18 C -0.143 4.143 19 C 0.074 3.926 20 C -0.427 4.427 21 H 0.090 0.910 22 C 0.071 3.929 23 N -0.774 5.774 24 Si 0.915 3.085 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.257 1.257 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 13.797 1.628 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 N -0.153 5.153 4 C -0.142 4.142 5 C 0.011 3.989 6 C -0.119 4.119 7 C -0.147 4.147 8 C -0.114 4.114 9 C -0.130 4.130 10 C 0.357 3.643 11 O -0.395 6.395 12 O -0.269 6.269 13 C 0.024 3.976 14 C -0.205 4.205 15 C -0.227 4.227 16 C -0.066 4.066 17 C -0.144 4.144 18 C -0.167 4.167 19 C 0.069 3.931 20 C -0.455 4.455 21 H 0.108 0.892 22 C -0.150 4.150 23 N -0.397 5.397 24 Si 0.738 3.262 25 H -0.190 1.190 26 H -0.198 1.198 27 H -0.180 1.180 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.161 0.839 42 H 0.120 0.880 43 H 0.145 0.855 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.913 14.453 1.502 15.049 hybrid contribution 0.270 -1.591 -0.002 1.614 sum 4.184 12.862 1.500 13.608 Atomic orbital electron populations 1.20277 0.90914 1.01354 1.00501 1.21003 0.95196 0.87873 1.09395 1.66718 1.08556 1.30548 1.09440 1.18602 0.89166 0.90244 1.16143 1.18618 0.92039 0.92015 0.96231 1.21492 0.93911 0.97989 0.98544 1.20913 0.99659 0.91997 1.02103 1.21235 0.92374 0.98755 0.99029 1.18986 0.93550 0.90051 1.10452 1.21371 0.86467 0.84051 0.72427 1.90817 1.15140 1.87640 1.45901 1.86610 1.41618 1.14667 1.83976 1.22702 0.94382 0.82739 0.97765 1.21879 1.01014 0.96743 1.00901 1.22211 1.02197 1.02082 0.96234 1.21416 1.01363 0.89239 0.94590 1.21260 0.98539 0.93377 1.01185 1.21300 0.94671 0.96626 1.04124 1.18441 0.92582 0.93186 0.88853 1.19725 1.01613 0.91996 1.32173 0.89186 1.26120 0.94207 1.02173 0.92506 1.69773 1.16768 1.32687 1.20520 0.86177 0.79626 0.79849 0.80515 1.19048 1.19790 1.18048 0.93206 0.93020 0.91424 0.85433 0.85759 0.85427 0.89721 0.91426 0.90498 0.91670 0.91572 0.91810 0.90844 0.83874 0.88013 0.85510 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.58 36.01 0.34 -1.17 16 2 C 0.01 0.29 6.86 -81.81 -0.56 -0.28 16 3 N -0.44 -10.91 9.31 -5.39 -0.05 -10.96 16 4 C -0.01 -0.19 6.73 -82.74 -0.56 -0.74 16 5 C 0.01 0.24 5.87 -104.94 -0.62 -0.38 16 6 C -0.10 -1.65 9.41 -39.10 -0.37 -2.02 16 7 C -0.13 -1.79 10.02 -39.70 -0.40 -2.18 16 8 C -0.10 -1.37 9.61 -39.07 -0.38 -1.74 16 9 C -0.13 -2.20 5.87 -105.03 -0.62 -2.81 16 10 C 0.51 8.51 7.87 34.62 0.27 8.78 16 11 O -0.51 -9.64 15.60 -19.24 -0.30 -9.94 16 12 O -0.35 -4.83 9.12 -40.53 -0.37 -5.20 16 13 C 0.08 0.87 3.19 -26.73 -0.09 0.78 16 14 C -0.15 -1.16 9.57 37.16 0.36 -0.80 16 15 C -0.17 -1.64 9.55 37.16 0.35 -1.29 16 16 C -0.05 -0.92 9.12 -38.75 -0.35 -1.28 16 17 C -0.12 -2.78 9.37 -39.55 -0.37 -3.16 16 18 C -0.14 -3.50 8.72 -39.01 -0.34 -3.84 16 19 C 0.07 1.87 5.58 -106.64 -0.60 1.28 16 20 C -0.43 -10.26 8.14 -37.84 -0.31 -10.57 16 21 H 0.09 2.04 6.86 -52.49 -0.36 1.68 16 22 C 0.07 1.61 5.19 -17.33 -0.09 1.52 16 23 N -0.77 -18.24 10.94 55.55 0.61 -17.63 16 24 Si 0.92 16.89 29.59 -169.99 -5.03 11.86 16 25 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 26 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 27 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.07 1.35 6.76 -51.93 -0.35 1.00 16 31 H 0.13 1.92 6.17 -52.49 -0.32 1.59 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.13 1.52 7.60 -52.49 -0.40 1.12 16 34 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.14 3.07 7.11 -52.49 -0.37 2.70 16 42 H 0.10 1.97 6.17 -52.49 -0.32 1.65 16 43 H 0.13 3.12 6.26 -52.49 -0.33 2.79 16 44 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -28.13 371.70 -9.62 -37.74 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.77 Total: 8.41 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -4.31 Total: -19.89 kcal Atomic # 7 Polarization: -29.15 SS G_CDS: 0.56 Total: -28.59 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.67 Total: -15.14 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.13 -9.62 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240948498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.900 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds