Wall clock time and date at job start Tue Mar 31 2020 13:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31261 * 119.80479 * 2 1 4 4 C 1.33009 * 121.73086 * 180.02562 * 3 2 1 5 5 C 1.47982 * 119.45373 * 179.97438 * 4 3 2 6 6 C 1.39726 * 120.07267 * 185.01927 * 5 4 3 7 7 C 1.38047 * 120.15584 * 179.97438 * 6 5 4 8 8 C 1.38116 * 120.30344 * 359.97438 * 7 6 5 9 9 C 1.39728 * 120.14330 * 359.97438 * 8 7 6 10 10 C 1.47743 * 120.07988 * 180.02562 * 9 8 7 11 11 O 1.21472 * 120.00295 * 179.97438 * 10 9 8 12 12 O 1.34714 * 120.00247 * 359.97438 * 10 9 8 13 13 C 1.45194 * 117.00447 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47489 * 149.99841 * 13 12 10 15 15 C 1.53002 * 109.47017 * 270.00157 * 13 12 10 16 16 C 1.39332 * 120.06862 * 4.74463 * 5 4 3 17 17 C 1.39895 * 121.09806 * 359.97438 * 4 3 2 18 18 C 1.36609 * 119.46568 * 359.97438 * 17 4 3 19 19 C 1.40948 * 119.79260 * 179.97438 * 2 1 3 20 20 C 1.41057 * 120.55833 * 0.27850 * 19 2 1 21 21 H 1.07992 * 119.99958 * 334.49779 * 20 19 2 22 22 C 1.40028 * 119.99803 * 154.49769 * 20 19 2 23 23 N 1.30785 * 120.00400 * 343.81085 * 22 20 19 24 24 Si 1.86807 * 119.99734 * 163.81365 * 22 20 19 25 25 H 1.48493 * 109.47142 * 89.99573 * 24 22 20 26 26 H 1.48500 * 109.46938 * 209.99988 * 24 22 20 27 27 H 1.48504 * 109.46766 * 329.99885 * 24 22 20 28 28 H 1.09000 * 109.47682 * 270.00882 * 1 2 3 29 29 H 1.09009 * 109.46908 * 30.00043 * 1 2 3 30 30 H 1.09003 * 109.47551 * 150.00196 * 1 2 3 31 31 H 1.07995 * 119.92354 * 359.95684 * 6 5 4 32 32 H 1.07997 * 119.85006 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.92675 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47123 * 29.99550 * 13 12 10 35 35 H 1.09008 * 109.46731 * 59.99964 * 14 13 12 36 36 H 1.08997 * 109.46998 * 179.97438 * 14 13 12 37 37 H 1.09000 * 109.47123 * 300.00361 * 14 13 12 38 38 H 1.09004 * 109.46679 * 299.99666 * 15 13 12 39 39 H 1.09000 * 109.47628 * 59.99801 * 15 13 12 40 40 H 1.08998 * 109.46953 * 179.97438 * 15 13 12 41 41 H 1.07995 * 120.15030 * 359.97438 * 16 5 4 42 42 H 1.07995 * 120.26150 * 179.97438 * 17 4 3 43 43 H 1.07997 * 120.78892 * 179.97438 * 18 17 4 44 44 H 0.97000 * 120.00076 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1390 0.0000 4 6 3.4888 1.1837 -0.0005 5 6 4.1727 2.4960 -0.0011 6 6 5.5644 2.5601 -0.1074 7 6 6.2042 3.7834 -0.1086 8 6 5.4745 4.9516 -0.0054 9 6 4.0822 4.9021 0.1005 10 6 3.3030 6.1526 0.2102 11 8 2.0925 6.1080 0.3017 12 8 3.9349 7.3423 0.2088 13 6 3.1060 8.5292 0.3204 14 6 3.8915 9.6353 1.0277 15 6 2.7035 9.0034 -1.0775 16 6 3.4298 3.6705 0.0987 17 6 4.2512 0.0108 -0.0005 18 6 3.6202 -1.2009 0.0005 19 6 2.2073 -1.2232 0.0005 20 6 1.5096 -2.4491 -0.0048 21 1 0.5072 -2.5015 0.3935 22 6 2.1167 -3.5979 -0.5266 23 7 3.1768 -3.4904 -1.2850 24 14 1.4123 -5.2843 -0.1397 25 1 0.4070 -5.6491 -1.1699 26 1 2.5059 -6.2889 -0.1375 27 1 0.7640 -5.2552 1.1961 28 1 -0.3634 0.0002 1.0276 29 1 -0.3633 0.8901 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 6.1410 1.6506 -0.1885 32 1 7.2801 3.8272 -0.1906 33 1 5.9813 5.9053 -0.0074 34 1 2.2107 8.2943 0.8961 35 1 4.7868 9.8702 0.4519 36 1 3.2694 10.5264 1.1111 37 1 4.1783 9.2974 2.0236 38 1 3.5988 9.2384 -1.6532 39 1 2.1438 8.2155 -1.5814 40 1 2.0809 9.8942 -0.9937 41 1 2.3535 3.6265 0.1762 42 1 5.3299 0.0628 -0.0014 43 1 4.1877 -2.1197 0.0001 44 1 3.5975 -4.2863 -1.6461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240948498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:31 Heat of formation + Delta-G solvation = -67.057587 kcal Electronic energy + Delta-G solvation = -26009.633180 eV Core-core repulsion = 22276.202442 eV Total energy + Delta-G solvation = -3733.430739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72183 -40.68674 -39.40159 -37.82569 -36.11724 -34.40521 -33.89704 -32.85642 -32.10893 -31.26034 -28.79683 -28.20421 -26.97427 -25.74465 -24.26458 -23.01529 -22.36603 -21.95505 -21.22719 -19.36384 -19.00310 -18.14875 -17.43940 -17.14791 -16.96371 -16.54799 -16.25146 -15.62403 -15.41406 -15.15817 -15.04641 -14.87282 -14.64104 -14.28495 -14.22130 -13.74015 -13.57209 -13.52600 -13.39206 -13.20251 -13.16064 -12.89347 -12.82330 -12.72706 -12.68526 -12.58580 -12.27785 -12.09615 -11.90894 -11.67933 -11.60508 -11.48910 -11.26668 -10.36353 -10.12827 -9.99862 -9.94436 -9.04012 -8.74047 -6.42143 -0.33928 0.09234 0.90454 1.10024 1.38835 1.43547 1.53146 1.55590 1.63896 2.15194 2.58962 2.96574 3.59044 3.65522 3.69800 3.80775 3.92538 3.94282 4.10361 4.13576 4.26294 4.36518 4.43664 4.54401 4.63157 4.68498 4.71137 4.74925 4.85126 4.90167 4.93713 4.96646 4.99806 5.03543 5.10874 5.11022 5.21785 5.23896 5.33020 5.38040 5.43954 5.47530 5.61016 5.76651 5.91500 5.98228 6.02416 6.44460 6.66700 6.67076 6.74965 7.70355 8.15337 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.002460 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.555539 B =11381.208118 C =12244.241728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.017 4.017 3 N -0.468 5.468 4 C -0.014 4.014 5 C -0.022 4.022 6 C -0.092 4.092 7 C -0.113 4.113 8 C -0.070 4.070 9 C -0.142 4.142 10 C 0.514 3.486 11 O -0.542 6.542 12 O -0.343 6.343 13 C 0.067 3.933 14 C -0.141 4.141 15 C -0.167 4.167 16 C -0.065 4.065 17 C -0.128 4.128 18 C -0.161 4.161 19 C 0.044 3.956 20 C -0.455 4.455 21 H 0.094 0.906 22 C 0.034 3.966 23 N -0.806 5.806 24 Si 0.988 3.012 25 H -0.260 1.260 26 H -0.265 1.265 27 H -0.256 1.256 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 15.496 1.708 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.162 4.162 3 N -0.177 5.177 4 C -0.148 4.148 5 C -0.023 4.023 6 C -0.111 4.111 7 C -0.130 4.130 8 C -0.088 4.088 9 C -0.143 4.143 10 C 0.361 3.639 11 O -0.433 6.433 12 O -0.260 6.260 13 C 0.013 3.987 14 C -0.198 4.198 15 C -0.224 4.224 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.186 4.186 19 C 0.040 3.960 20 C -0.483 4.483 21 H 0.112 0.888 22 C -0.184 4.184 23 N -0.430 5.430 24 Si 0.808 3.192 25 H -0.185 1.185 26 H -0.189 1.189 27 H -0.179 1.179 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.192 0.808 33 H 0.181 0.819 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.138 0.862 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.486 16.179 1.580 17.502 hybrid contribution -0.377 -1.804 -0.040 1.843 sum 6.109 14.375 1.539 15.695 Atomic orbital electron populations 1.20248 0.89108 1.01602 1.01306 1.21527 0.96809 0.87919 1.09923 1.66817 1.09704 1.30741 1.10423 1.19239 0.89026 0.92134 1.14432 1.18636 0.93723 0.90486 0.99428 1.21765 0.92246 1.00120 0.96932 1.21418 1.01915 0.90262 0.99423 1.21695 0.90873 1.00727 0.95519 1.19088 0.95030 0.89180 1.10970 1.21379 0.85953 0.84912 0.71682 1.90802 1.16695 1.88215 1.47628 1.86585 1.41713 1.14443 1.83260 1.23111 0.94320 0.82438 0.98875 1.21898 1.01424 0.96030 1.00413 1.22219 1.02860 1.02136 0.95199 1.21176 1.00005 0.90742 0.96530 1.21543 1.00150 0.92563 1.00514 1.21380 0.94787 0.97139 1.05331 1.18783 0.93302 0.94033 0.89922 1.19941 1.02199 0.92612 1.33550 0.88796 1.26953 0.94337 1.05452 0.91641 1.69808 1.17912 1.34125 1.21154 0.85093 0.78983 0.74954 0.80171 1.18453 1.18894 1.17934 0.92046 0.92707 0.91034 0.83810 0.80830 0.81855 0.91438 0.90267 0.88101 0.91790 0.90269 0.94454 0.88336 0.87258 0.84873 0.86180 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.84 9.58 71.24 0.68 -2.16 16 2 C -0.02 -0.87 6.86 43.31 0.30 -0.58 16 3 N -0.47 -24.30 9.31 -170.97 -1.59 -25.89 16 4 C -0.01 -0.66 6.73 41.95 0.28 -0.38 16 5 C -0.02 -0.88 5.87 -20.07 -0.12 -1.00 16 6 C -0.09 -2.79 9.41 22.58 0.21 -2.58 16 7 C -0.11 -2.59 10.02 22.20 0.22 -2.37 16 8 C -0.07 -1.73 9.61 22.60 0.22 -1.51 16 9 C -0.14 -4.70 5.87 -20.13 -0.12 -4.82 16 10 C 0.51 17.08 7.87 70.34 0.55 17.63 16 11 O -0.54 -21.56 15.60 19.93 0.31 -21.25 16 12 O -0.34 -8.86 9.12 -56.24 -0.51 -9.38 16 13 C 0.07 1.37 3.19 30.60 0.10 1.47 16 14 C -0.14 -1.77 9.57 71.98 0.69 -1.09 16 15 C -0.17 -2.96 9.55 71.98 0.69 -2.28 16 16 C -0.07 -2.64 9.12 22.81 0.21 -2.43 16 17 C -0.13 -5.90 9.37 22.29 0.21 -5.69 16 18 C -0.16 -8.24 8.72 22.64 0.20 -8.04 16 19 C 0.04 2.35 5.58 -21.17 -0.12 2.23 16 20 C -0.45 -22.74 8.14 23.40 0.19 -22.55 16 21 H 0.09 4.42 6.86 -2.91 -0.02 4.40 16 22 C 0.03 1.58 5.19 85.28 0.44 2.03 16 23 N -0.81 -38.90 10.94 21.84 0.24 -38.66 16 24 Si 0.99 34.81 29.59 68.60 2.03 36.84 16 25 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 26 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 27 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.07 2.99 6.76 -2.39 -0.02 2.97 16 31 H 0.14 3.86 6.17 -2.91 -0.02 3.85 16 32 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.16 2.96 7.60 -2.91 -0.02 2.94 16 34 H 0.07 1.63 7.16 -2.38 -0.02 1.61 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.83 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 5.09 7.11 -2.91 -0.02 5.07 16 42 H 0.13 5.07 6.17 -2.91 -0.02 5.05 16 43 H 0.12 6.16 6.26 -2.91 -0.02 6.14 16 44 H 0.30 12.73 8.30 -92.71 -0.77 11.96 16 Total: -1.00 -66.50 371.70 6.33 -60.17 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 1.02 Total: 32.28 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.83 Total: -34.11 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.35 Total: -64.55 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.20 Total: -30.63 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -66.50 6.33 -60.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240948498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.891 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds