Wall clock time and date at job start Tue Mar 31 2020 13:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38929 * 119.24078 * 2 1 4 4 C 1.36852 * 119.80172 * 179.97438 * 3 2 1 5 5 C 1.41172 * 118.39403 * 359.97438 * 4 3 2 6 6 C 1.40824 * 120.72795 * 180.02562 * 5 4 3 7 7 H 1.08008 * 119.99825 * 151.17377 * 6 5 4 8 8 C 1.40152 * 119.99975 * 331.18051 * 6 5 4 9 9 N 1.30714 * 119.99965 * 348.82445 * 8 6 5 10 10 Si 1.86798 * 120.00148 * 168.83206 * 8 6 5 11 11 H 1.48500 * 109.47352 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47504 * 119.99810 * 10 8 6 13 13 H 1.48501 * 109.47309 * 239.99651 * 10 8 6 14 14 C 1.41898 * 118.55259 * 359.97438 * 5 4 3 15 15 C 1.47746 * 119.99708 * 179.97438 * 14 5 4 16 16 C 1.39800 * 120.00229 * 136.20747 * 15 14 5 17 17 C 1.37111 * 119.99893 * 180.02562 * 16 15 14 18 18 C 1.39794 * 120.00324 * 0.02562 * 17 16 15 19 19 C 1.47638 * 120.00231 * 179.97438 * 18 17 16 20 20 O 1.21486 * 119.99875 * 0.27266 * 19 18 17 21 21 O 1.34733 * 119.99918 * 180.02562 * 19 18 17 22 22 C 1.45206 * 116.99771 * 180.02562 * 21 19 18 23 23 C 1.53003 * 109.47179 * 149.99841 * 22 21 19 24 24 C 1.52999 * 109.46791 * 269.99324 * 22 21 19 25 25 C 1.39807 * 120.00166 * 0.27200 * 18 17 16 26 26 C 1.37120 * 119.99445 * 359.44693 * 25 18 17 27 27 N 1.31692 * 119.24510 * 180.24599 * 2 1 3 28 28 H 1.09005 * 109.46746 * 90.01022 * 1 2 3 29 29 H 1.09002 * 109.46876 * 210.00271 * 1 2 3 30 30 H 1.08993 * 109.47559 * 330.00712 * 1 2 3 31 31 H 1.07996 * 120.10138 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.80730 * 179.97438 * 4 3 2 33 33 H 0.97007 * 120.00326 * 180.02562 * 9 8 6 34 34 H 1.08003 * 120.00148 * 0.05347 * 16 15 14 35 35 H 1.08004 * 119.99550 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.46763 * 29.99701 * 22 21 19 37 37 H 1.09000 * 109.46688 * 59.99679 * 23 22 21 38 38 H 1.08992 * 109.47205 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.46686 * 300.00154 * 23 22 21 40 40 H 1.09007 * 109.46922 * 60.00329 * 24 22 21 41 41 H 1.09000 * 109.46984 * 179.97438 * 24 22 21 42 42 H 1.08989 * 109.47642 * 300.00171 * 24 22 21 43 43 H 1.07995 * 120.00271 * 179.70178 * 25 18 17 44 44 H 1.07999 * 119.99680 * 180.27218 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2123 0.0000 4 6 3.5541 1.2257 0.0005 5 6 4.2375 -0.0096 0.0016 6 6 5.6451 -0.0532 0.0027 7 1 6.1591 -0.8888 0.4545 8 6 6.3788 0.9878 -0.5822 9 7 5.7719 1.8833 -1.3159 10 14 8.2243 1.0954 -0.3137 11 1 8.6655 -0.0300 0.5489 12 1 8.9204 1.0182 -1.6231 13 1 8.5541 2.3837 0.3470 14 6 3.4752 -1.2065 0.0027 15 6 4.1577 -2.5169 0.0033 16 6 3.7058 -3.5400 0.8419 17 6 4.3395 -4.7559 0.8428 18 6 5.4378 -4.9723 0.0055 19 6 6.1205 -6.2814 0.0069 20 8 5.7247 -7.1721 0.7320 21 8 7.1794 -6.4898 -0.7998 22 6 7.8008 -7.8010 -0.7463 23 6 8.4063 -8.1346 -2.1112 24 6 8.9037 -7.7997 0.3142 25 6 5.8937 -3.9472 -0.8287 26 6 5.2564 -2.7331 -0.8338 27 7 2.1503 -1.1490 -0.0049 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6349 2.1413 0.0004 32 1 4.0981 2.1586 0.0001 33 1 6.2798 2.6036 -1.7211 34 1 2.8572 -3.3728 1.4888 35 1 3.9906 -5.5461 1.4911 36 1 7.0504 -8.5485 -0.4892 37 1 9.1567 -7.3870 -2.3683 38 1 8.8732 -9.1186 -2.0709 39 1 7.6206 -8.1354 -2.8667 40 1 8.4724 -7.5620 1.2867 41 1 9.3699 -8.7841 0.3547 42 1 9.6541 -7.0522 0.0571 43 1 6.7451 -4.1128 -1.4721 44 1 5.6058 -1.9426 -1.4814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241284013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:36 Heat of formation + Delta-G solvation = -55.229569 kcal Electronic energy + Delta-G solvation = -26503.061380 eV Core-core repulsion = 22770.143542 eV Total energy + Delta-G solvation = -3732.917837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38535 -39.10022 -37.84614 -36.51389 -34.48286 -33.27831 -32.34523 -31.06422 -30.48065 -29.61390 -27.87120 -27.45294 -25.22872 -23.79301 -22.40546 -21.72831 -20.94966 -20.60670 -19.98705 -17.86144 -17.51204 -16.76744 -15.89146 -15.76870 -15.67726 -14.74584 -14.55465 -14.25666 -14.10682 -13.86491 -13.55729 -13.32964 -13.19744 -12.93682 -12.86388 -12.48300 -12.41548 -12.33285 -12.06246 -11.87658 -11.70559 -11.68962 -11.55904 -11.30961 -11.10057 -11.06602 -11.03690 -10.65485 -10.54650 -10.48690 -10.23109 -9.92707 -9.54664 -8.74779 -8.48599 -8.21202 -8.14979 -7.45491 -7.01745 -4.64726 1.05607 2.00728 2.38620 2.69622 2.79720 2.93369 2.99228 3.01135 3.10504 3.71855 4.32505 4.43593 4.65176 4.78112 4.87129 5.00019 5.24908 5.34252 5.34765 5.44537 5.47610 5.54476 5.60149 5.68643 5.87300 5.88731 5.96549 5.99274 6.01850 6.06723 6.20962 6.33624 6.39943 6.44215 6.51692 6.58261 6.68845 6.78191 6.82169 6.88484 6.92404 7.10953 7.27751 7.40995 7.54830 7.70985 7.78248 8.00094 8.23363 8.45144 8.51552 9.43654 9.85998 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003768 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.616808 B = 7428.340417 C = 9439.415487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.003 4.003 3 C -0.141 4.141 4 C -0.123 4.123 5 C 0.087 3.913 6 C -0.437 4.437 7 H 0.091 0.909 8 C 0.074 3.926 9 N -0.784 5.784 10 Si 0.910 3.090 11 H -0.255 1.255 12 H -0.270 1.270 13 H -0.270 1.270 14 C -0.001 4.001 15 C 0.071 3.929 16 C -0.128 4.128 17 C -0.056 4.056 18 C -0.162 4.162 19 C 0.515 3.485 20 O -0.522 6.522 21 O -0.349 6.349 22 C 0.080 3.920 23 C -0.149 4.149 24 C -0.170 4.170 25 C -0.066 4.066 26 C -0.114 4.114 27 N -0.445 5.445 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.286 0.714 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.129 0.871 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -8.965 -0.586 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.161 4.161 4 C -0.148 4.148 5 C 0.082 3.918 6 C -0.466 4.466 7 H 0.109 0.891 8 C -0.146 4.146 9 N -0.408 5.408 10 Si 0.734 3.266 11 H -0.179 1.179 12 H -0.195 1.195 13 H -0.195 1.195 14 C -0.137 4.137 15 C 0.070 3.930 16 C -0.147 4.147 17 C -0.075 4.075 18 C -0.163 4.163 19 C 0.363 3.637 20 O -0.412 6.412 21 O -0.267 6.267 22 C 0.025 3.975 23 C -0.206 4.206 24 C -0.227 4.227 25 C -0.085 4.085 26 C -0.132 4.132 27 N -0.153 5.153 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.147 0.853 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.949 -9.803 -0.547 10.582 hybrid contribution 1.328 0.990 0.070 1.658 sum 5.276 -8.812 -0.477 10.282 Atomic orbital electron populations 1.20299 0.91370 1.00965 1.00636 1.20295 0.94939 0.88468 1.10945 1.21304 0.95467 0.97227 1.02145 1.21469 0.92621 0.98911 1.01835 1.18332 0.94117 0.90745 0.88588 1.19709 0.90991 1.05118 1.30750 0.89122 1.26026 1.01845 0.93973 0.92774 1.69712 1.38909 1.10881 1.21327 0.86189 0.81130 0.79788 0.79539 1.17861 1.19501 1.19462 1.19414 0.88522 0.91147 1.14652 1.18776 0.91772 0.91348 0.91065 1.21086 1.00736 0.92416 1.00419 1.20883 0.93152 0.97150 0.96278 1.18939 1.00549 0.91550 1.05258 1.21380 0.77429 0.88379 0.76540 1.90763 1.65003 1.45167 1.40295 1.86645 1.43355 1.36337 1.60341 1.22677 0.94767 0.83161 0.96921 1.21882 1.01586 1.02013 0.95146 1.22207 0.98655 1.02805 0.99035 1.21140 0.98588 0.92136 0.96614 1.21365 0.95767 0.96741 0.99376 1.66823 1.09444 1.29376 1.09670 0.93062 0.92489 0.92795 0.88134 0.85298 0.90269 0.85482 0.85517 0.89864 0.91335 0.90594 0.91651 0.91916 0.90950 0.91485 0.85287 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.00 0.37 -0.93 16 2 C 0.00 -0.07 6.79 -82.40 -0.56 -0.63 16 3 C -0.14 -3.09 9.65 -39.83 -0.38 -3.47 16 4 C -0.12 -2.93 8.72 -38.97 -0.34 -3.27 16 5 C 0.09 2.12 5.54 -106.41 -0.59 1.54 16 6 C -0.44 -10.28 6.70 -37.89 -0.25 -10.54 16 7 H 0.09 2.10 6.50 -52.48 -0.34 1.75 16 8 C 0.07 1.65 5.27 -17.31 -0.09 1.55 16 9 N -0.78 -18.11 10.91 55.56 0.61 -17.50 16 10 Si 0.91 16.97 29.58 -169.99 -5.03 11.94 16 11 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 12 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 13 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 14 C 0.00 -0.02 6.42 -82.24 -0.53 -0.54 16 15 C 0.07 1.52 5.26 -104.84 -0.55 0.96 16 16 C -0.13 -2.45 9.62 -39.41 -0.38 -2.83 16 17 C -0.06 -1.00 9.56 -39.41 -0.38 -1.37 16 18 C -0.16 -2.83 5.88 -104.89 -0.62 -3.45 16 19 C 0.52 8.68 7.87 34.57 0.27 8.95 16 20 O -0.52 -9.53 15.59 -19.25 -0.30 -9.83 16 21 O -0.35 -5.15 9.12 -40.58 -0.37 -5.52 16 22 C 0.08 0.93 3.19 -26.73 -0.09 0.84 16 23 C -0.15 -1.30 9.57 37.16 0.36 -0.95 16 24 C -0.17 -1.73 9.55 37.16 0.35 -1.38 16 25 C -0.07 -1.15 9.58 -39.40 -0.38 -1.53 16 26 C -0.11 -2.24 7.81 -39.40 -0.31 -2.54 16 27 N -0.44 -10.43 10.05 -5.45 -0.05 -10.49 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.80 8.07 -51.93 -0.42 0.39 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.13 3.11 6.34 -52.49 -0.33 2.77 16 33 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 34 H 0.13 2.37 8.06 -52.48 -0.42 1.94 16 35 H 0.13 2.06 7.64 -52.48 -0.40 1.66 16 36 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 43 H 0.13 1.96 7.60 -52.49 -0.40 1.56 16 44 H 0.14 2.91 6.74 -52.49 -0.35 2.55 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -26.85 373.26 -9.59 -36.45 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.98 Total: 8.90 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -4.09 Total: -19.58 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.55 Total: -27.99 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.67 Total: -15.35 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.85 -9.59 -36.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241284013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.782 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds