Wall clock time and date at job start Tue Mar 31 2020 13:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38929 * 119.24078 * 2 1 4 4 C 1.36852 * 119.80172 * 179.97438 * 3 2 1 5 5 C 1.41172 * 118.39403 * 359.97438 * 4 3 2 6 6 C 1.40824 * 120.72795 * 180.02562 * 5 4 3 7 7 H 1.08008 * 119.99825 * 151.17377 * 6 5 4 8 8 C 1.40152 * 119.99975 * 331.18051 * 6 5 4 9 9 N 1.30714 * 119.99965 * 348.82445 * 8 6 5 10 10 Si 1.86798 * 120.00148 * 168.83206 * 8 6 5 11 11 H 1.48500 * 109.47352 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47504 * 119.99810 * 10 8 6 13 13 H 1.48501 * 109.47309 * 239.99651 * 10 8 6 14 14 C 1.41898 * 118.55259 * 359.97438 * 5 4 3 15 15 C 1.47746 * 119.99708 * 179.97438 * 14 5 4 16 16 C 1.39800 * 120.00229 * 136.20747 * 15 14 5 17 17 C 1.37111 * 119.99893 * 180.02562 * 16 15 14 18 18 C 1.39794 * 120.00324 * 0.02562 * 17 16 15 19 19 C 1.47638 * 120.00231 * 179.97438 * 18 17 16 20 20 O 1.21486 * 119.99875 * 0.27266 * 19 18 17 21 21 O 1.34733 * 119.99918 * 180.02562 * 19 18 17 22 22 C 1.45206 * 116.99771 * 180.02562 * 21 19 18 23 23 C 1.53003 * 109.47179 * 149.99841 * 22 21 19 24 24 C 1.52999 * 109.46791 * 269.99324 * 22 21 19 25 25 C 1.39807 * 120.00166 * 0.27200 * 18 17 16 26 26 C 1.37120 * 119.99445 * 359.44693 * 25 18 17 27 27 N 1.31692 * 119.24510 * 180.24599 * 2 1 3 28 28 H 1.09005 * 109.46746 * 90.01022 * 1 2 3 29 29 H 1.09002 * 109.46876 * 210.00271 * 1 2 3 30 30 H 1.08993 * 109.47559 * 330.00712 * 1 2 3 31 31 H 1.07996 * 120.10138 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.80730 * 179.97438 * 4 3 2 33 33 H 0.97007 * 120.00326 * 180.02562 * 9 8 6 34 34 H 1.08003 * 120.00148 * 0.05347 * 16 15 14 35 35 H 1.08004 * 119.99550 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.46763 * 29.99701 * 22 21 19 37 37 H 1.09000 * 109.46688 * 59.99679 * 23 22 21 38 38 H 1.08992 * 109.47205 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.46686 * 300.00154 * 23 22 21 40 40 H 1.09007 * 109.46922 * 60.00329 * 24 22 21 41 41 H 1.09000 * 109.46984 * 179.97438 * 24 22 21 42 42 H 1.08989 * 109.47642 * 300.00171 * 24 22 21 43 43 H 1.07995 * 120.00271 * 179.70178 * 25 18 17 44 44 H 1.07999 * 119.99680 * 180.27218 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2123 0.0000 4 6 3.5541 1.2257 0.0005 5 6 4.2375 -0.0096 0.0016 6 6 5.6451 -0.0532 0.0027 7 1 6.1591 -0.8888 0.4545 8 6 6.3788 0.9878 -0.5822 9 7 5.7719 1.8833 -1.3159 10 14 8.2243 1.0954 -0.3137 11 1 8.6655 -0.0300 0.5489 12 1 8.9204 1.0182 -1.6231 13 1 8.5541 2.3837 0.3470 14 6 3.4752 -1.2065 0.0027 15 6 4.1577 -2.5169 0.0033 16 6 3.7058 -3.5400 0.8419 17 6 4.3395 -4.7559 0.8428 18 6 5.4378 -4.9723 0.0055 19 6 6.1205 -6.2814 0.0069 20 8 5.7247 -7.1721 0.7320 21 8 7.1794 -6.4898 -0.7998 22 6 7.8008 -7.8010 -0.7463 23 6 8.4063 -8.1346 -2.1112 24 6 8.9037 -7.7997 0.3142 25 6 5.8937 -3.9472 -0.8287 26 6 5.2564 -2.7331 -0.8338 27 7 2.1503 -1.1490 -0.0049 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6349 2.1413 0.0004 32 1 4.0981 2.1586 0.0001 33 1 6.2798 2.6036 -1.7211 34 1 2.8572 -3.3728 1.4888 35 1 3.9906 -5.5461 1.4911 36 1 7.0504 -8.5485 -0.4892 37 1 9.1567 -7.3870 -2.3683 38 1 8.8732 -9.1186 -2.0709 39 1 7.6206 -8.1354 -2.8667 40 1 8.4724 -7.5620 1.2867 41 1 9.3699 -8.7841 0.3547 42 1 9.6541 -7.0522 0.0571 43 1 6.7451 -4.1128 -1.4721 44 1 5.6058 -1.9426 -1.4814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241284013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:35 Heat of formation + Delta-G solvation = -65.745153 kcal Electronic energy + Delta-G solvation = -26503.517370 eV Core-core repulsion = 22770.143542 eV Total energy + Delta-G solvation = -3733.373827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67559 -40.71614 -39.35248 -37.76487 -36.18367 -34.36658 -33.79348 -32.76638 -31.98122 -31.14212 -29.50182 -28.19094 -26.76831 -25.33085 -23.84634 -23.14707 -22.48623 -21.98162 -21.38541 -19.35625 -19.06226 -18.07099 -17.41933 -17.24807 -17.04453 -16.35914 -15.74773 -15.68883 -15.62189 -15.15857 -14.89290 -14.81848 -14.40924 -14.33316 -14.18786 -14.01047 -13.66351 -13.36221 -13.25876 -13.16018 -13.12132 -13.06636 -12.84871 -12.71066 -12.66362 -12.63074 -12.17465 -12.02938 -11.86338 -11.73211 -11.58566 -11.44949 -11.20015 -10.41417 -9.98518 -9.95989 -9.81205 -9.14912 -8.69883 -6.41500 -0.42552 0.52455 0.72528 1.02218 1.39739 1.48627 1.53374 1.60576 1.63503 2.16615 2.68250 2.87801 3.57019 3.64924 3.77403 3.82846 3.95640 3.98123 4.04585 4.15638 4.33052 4.42103 4.51333 4.57920 4.62580 4.67411 4.76545 4.78784 4.85604 4.89276 4.92953 4.98433 5.01545 5.10852 5.12665 5.18324 5.22246 5.23350 5.31814 5.34899 5.42008 5.51673 5.70017 5.79306 5.90179 6.00513 6.05488 6.47743 6.70852 6.70990 6.76653 7.68766 8.20974 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003768 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.616808 B = 7428.340417 C = 9439.415487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.015 4.015 3 C -0.145 4.145 4 C -0.145 4.145 5 C 0.059 3.941 6 C -0.455 4.455 7 H 0.086 0.914 8 C 0.041 3.959 9 N -0.813 5.813 10 Si 0.975 3.025 11 H -0.257 1.257 12 H -0.262 1.262 13 H -0.265 1.265 14 C -0.014 4.014 15 C 0.045 3.955 16 C -0.128 4.128 17 C -0.052 4.052 18 C -0.160 4.160 19 C 0.521 3.479 20 O -0.537 6.537 21 O -0.351 6.351 22 C 0.068 3.932 23 C -0.144 4.144 24 C -0.167 4.167 25 C -0.054 4.054 26 C -0.119 4.119 27 N -0.463 5.463 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.294 0.706 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.154 0.846 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -10.272 -0.895 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.171 4.171 5 C 0.055 3.945 6 C -0.484 4.484 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.438 5.438 10 Si 0.795 3.205 11 H -0.181 1.181 12 H -0.186 1.186 13 H -0.189 1.189 14 C -0.151 4.151 15 C 0.044 3.956 16 C -0.147 4.147 17 C -0.070 4.070 18 C -0.161 4.161 19 C 0.368 3.632 20 O -0.429 6.429 21 O -0.268 6.268 22 C 0.014 3.986 23 C -0.201 4.201 24 C -0.224 4.224 25 C -0.073 4.073 26 C -0.138 4.138 27 N -0.172 5.172 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.171 0.829 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.036 -11.112 -0.867 12.231 hybrid contribution 0.951 1.283 0.146 1.604 sum 5.988 -9.829 -0.721 11.532 Atomic orbital electron populations 1.20357 0.88043 1.02494 1.01851 1.21091 0.97263 0.88043 1.09389 1.21616 0.94963 0.98659 1.01229 1.21524 0.93696 0.98493 1.03395 1.18655 0.94993 0.91369 0.89528 1.19769 0.90958 1.05863 1.31771 0.89574 1.26725 1.05664 0.93207 0.91978 1.69749 1.40621 1.11496 1.21917 0.85235 0.76052 0.79633 0.79563 1.18054 1.18635 1.18919 1.19815 0.88893 0.92117 1.14255 1.18867 0.92841 0.91145 0.92764 1.21073 1.00897 0.92532 1.00188 1.21015 0.92909 0.96811 0.96257 1.19132 1.00291 0.92127 1.04591 1.21148 0.77798 0.87681 0.76540 1.90757 1.65637 1.45532 1.41023 1.86629 1.42433 1.38329 1.59403 1.23094 0.94889 0.81326 0.99263 1.21911 1.01511 1.03589 0.93059 1.22217 0.98202 1.04631 0.97366 1.21291 0.98627 0.90970 0.96364 1.21260 0.95810 0.97344 0.99376 1.66937 1.09483 1.30231 1.10502 0.91865 0.92049 0.90200 0.85354 0.86290 0.89526 0.85443 0.83941 0.90666 0.90905 0.87898 0.91896 0.93900 0.88218 0.90938 0.82884 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.23 0.72 -1.57 16 2 C -0.02 -0.66 6.79 42.74 0.29 -0.37 16 3 C -0.14 -6.36 9.65 22.11 0.21 -6.15 16 4 C -0.15 -7.16 8.72 22.67 0.20 -6.96 16 5 C 0.06 3.00 5.54 -21.02 -0.12 2.89 16 6 C -0.46 -22.16 6.70 23.37 0.16 -22.00 16 7 H 0.09 4.13 6.50 -2.91 -0.02 4.11 16 8 C 0.04 1.88 5.27 85.32 0.45 2.33 16 9 N -0.81 -38.41 10.91 21.86 0.24 -38.17 16 10 Si 0.97 34.86 29.58 68.60 2.03 36.89 16 11 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 12 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 13 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 14 C -0.01 -0.70 6.42 42.45 0.27 -0.43 16 15 C 0.04 1.95 5.26 -20.01 -0.11 1.85 16 16 C -0.13 -4.97 9.62 22.38 0.22 -4.75 16 17 C -0.05 -1.80 9.56 22.38 0.21 -1.58 16 18 C -0.16 -5.45 5.88 -20.04 -0.12 -5.57 16 19 C 0.52 16.83 7.87 70.30 0.55 17.39 16 20 O -0.54 -18.98 15.59 19.88 0.31 -18.67 16 21 O -0.35 -9.71 9.12 -56.43 -0.51 -10.23 16 22 C 0.07 1.44 3.19 30.60 0.10 1.54 16 23 C -0.14 -2.09 9.57 71.98 0.69 -1.41 16 24 C -0.17 -3.03 9.55 71.98 0.69 -2.35 16 25 C -0.05 -1.85 9.58 22.39 0.21 -1.64 16 26 C -0.12 -4.76 7.81 22.39 0.17 -4.59 16 27 N -0.46 -22.08 10.05 -171.15 -1.72 -23.80 16 28 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 31 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 32 H 0.12 5.98 6.34 -2.91 -0.02 5.96 16 33 H 0.29 12.47 8.29 -92.70 -0.77 11.70 16 34 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.14 4.47 7.64 -2.91 -0.02 4.45 16 36 H 0.08 1.73 7.16 -2.39 -0.02 1.71 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.15 4.39 7.60 -2.91 -0.02 4.37 16 44 H 0.13 5.47 6.74 -2.91 -0.02 5.45 16 Total: -1.00 -59.13 373.26 6.16 -52.97 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 1.01 Total: 34.37 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 4.81 Total: -33.36 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -1.48 Total: -61.97 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.20 Total: -28.90 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -59.13 6.16 -52.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241284013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.775 kcal (2) G-P(sol) polarization free energy of solvation -59.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds