Wall clock time and date at job start Tue Mar 31 2020 13:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31207 * 119.79866 * 2 1 4 4 C 1.33055 * 121.72957 * 180.02562 * 3 2 1 5 5 C 1.47892 * 119.45487 * 180.02562 * 4 3 2 6 6 C 1.39739 * 119.99856 * 179.72300 * 5 4 3 7 7 C 1.37607 * 120.00709 * 179.76542 * 6 5 4 8 8 C 1.39793 * 119.99241 * 0.49311 * 7 6 5 9 9 C 1.47632 * 120.00750 * 179.74066 * 8 7 6 10 10 O 1.21484 * 119.99901 * 180.02562 * 9 8 7 11 11 O 1.34733 * 119.99834 * 0.02640 * 9 8 7 12 12 C 1.45201 * 117.00057 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47379 * 89.99731 * 12 11 9 14 14 C 1.53002 * 109.47066 * 209.99779 * 12 11 9 15 15 C 1.39799 * 119.98892 * 359.76073 * 8 7 6 16 16 C 1.37605 * 119.99444 * 0.02562 * 15 8 7 17 17 C 1.39921 * 121.09853 * 0.02562 * 4 3 2 18 18 C 1.36610 * 119.46493 * 359.97270 * 17 4 3 19 19 C 1.41013 * 119.79592 * 179.97438 * 2 1 3 20 20 C 1.40996 * 120.55563 * 359.72234 * 19 2 1 21 21 H 1.07999 * 119.99637 * 334.83511 * 20 19 2 22 22 C 1.40109 * 120.00045 * 154.82836 * 20 19 2 23 23 N 1.30734 * 120.00408 * 344.03747 * 22 20 19 24 24 Si 1.86805 * 119.99974 * 164.03486 * 22 20 19 25 25 H 1.48501 * 109.46899 * 60.00475 * 24 22 20 26 26 H 1.48497 * 109.47145 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47182 * 300.00288 * 24 22 20 28 28 H 1.09001 * 109.46574 * 270.02061 * 1 2 3 29 29 H 1.08995 * 109.46985 * 30.01927 * 1 2 3 30 30 H 1.08991 * 109.47375 * 150.02028 * 1 2 3 31 31 H 1.08000 * 119.99544 * 0.02610 * 6 5 4 32 32 H 1.07992 * 120.00130 * 180.25739 * 7 6 5 33 33 H 1.09001 * 109.46877 * 329.99511 * 12 11 9 34 34 H 1.09001 * 109.47295 * 60.00037 * 13 12 11 35 35 H 1.08998 * 109.47257 * 180.02562 * 13 12 11 36 36 H 1.09005 * 109.47088 * 299.99988 * 13 12 11 37 37 H 1.08997 * 109.47149 * 59.99388 * 14 12 11 38 38 H 1.08998 * 109.46919 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.47054 * 299.99624 * 14 12 11 40 40 H 1.07998 * 120.00796 * 179.97438 * 15 8 7 41 41 H 1.07998 * 120.00036 * 179.97438 * 16 15 8 42 42 H 1.08005 * 120.26464 * 180.02562 * 17 4 3 43 43 H 1.08006 * 120.79338 * 180.02562 * 18 17 4 44 44 H 0.96989 * 120.00436 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1591 1.1386 0.0000 4 6 3.4889 1.1834 -0.0005 5 6 4.1723 2.4949 0.0001 6 6 5.5684 2.5553 0.0054 7 6 6.2045 3.7755 0.0011 8 6 5.4539 4.9548 0.0018 9 6 6.1361 6.2641 0.0030 10 8 5.4836 7.2889 0.0040 11 8 7.4821 6.3224 0.0028 12 6 8.0847 7.6435 0.0046 13 6 8.2966 8.1055 1.4476 14 6 9.4329 7.5900 -0.7170 15 6 4.0573 4.8942 0.0018 16 6 3.4217 3.6738 0.0017 17 6 4.2516 0.0103 -0.0016 18 6 3.6206 -1.2014 -0.0016 19 6 2.2078 -1.2237 0.0005 20 6 1.5103 -2.4491 0.0070 21 1 0.5092 -2.4984 0.4091 22 6 2.1160 -3.6026 -0.5084 23 7 3.1757 -3.5012 -1.2672 24 14 1.4093 -5.2856 -0.1111 25 1 0.0107 -5.3640 -0.6040 26 1 2.2263 -6.3343 -0.7729 27 1 1.4287 -5.4962 1.3587 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 6.1482 1.6441 0.0087 32 1 7.2834 3.8220 0.0010 33 1 7.4257 8.3441 -0.5082 34 1 8.9556 7.4049 1.9604 35 1 8.7486 9.0974 1.4489 36 1 7.3362 8.1436 1.9617 37 1 9.2820 7.2608 -1.7450 38 1 9.8850 8.5818 -0.7160 39 1 10.0919 6.8894 -0.2042 40 1 3.4771 5.8051 0.0028 41 1 2.3427 3.6268 0.0022 42 1 5.3303 0.0624 -0.0016 43 1 4.1882 -2.1203 -0.0020 44 1 3.5952 -4.2998 -1.6236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241284211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:39 Heat of formation + Delta-G solvation = -66.835039 kcal Electronic energy + Delta-G solvation = -25732.494657 eV Core-core repulsion = 21999.073569 eV Total energy + Delta-G solvation = -3733.421088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67085 -40.69343 -39.39910 -37.78129 -36.13279 -34.35453 -33.91921 -32.87539 -31.90580 -31.45951 -28.76959 -28.19086 -27.41762 -25.28186 -23.91157 -23.31965 -22.39561 -21.73040 -21.36900 -19.33643 -19.13999 -18.20425 -17.51939 -17.07429 -17.03941 -16.60718 -15.94575 -15.49125 -15.41167 -15.09367 -15.03577 -14.84243 -14.55650 -14.31061 -14.19691 -13.83678 -13.71831 -13.49091 -13.38342 -13.19012 -13.15553 -12.98124 -12.82566 -12.70261 -12.66573 -12.57478 -12.19458 -12.07313 -11.88280 -11.65919 -11.60957 -11.46084 -11.27108 -10.38122 -10.12662 -9.97694 -9.95431 -9.07208 -8.76076 -6.43537 -0.52652 0.46665 0.73946 1.06766 1.39234 1.43929 1.52092 1.62474 1.70606 2.14513 2.58444 2.96584 3.58487 3.68006 3.69160 3.82607 3.91285 3.96057 4.03501 4.15437 4.23692 4.36424 4.46960 4.55862 4.65092 4.67741 4.76731 4.78987 4.85813 4.86275 4.93992 4.97875 5.00236 5.08218 5.12480 5.13341 5.23191 5.24576 5.27360 5.36141 5.47611 5.48851 5.63087 5.75895 5.90304 5.97095 6.01476 6.43426 6.64185 6.70622 6.73551 7.68386 8.12070 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.002213 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.285541 B =12649.632913 C =13395.868558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.013 4.013 3 N -0.455 5.455 4 C -0.029 4.029 5 C 0.038 3.962 6 C -0.148 4.148 7 C -0.041 4.041 8 C -0.169 4.169 9 C 0.519 3.481 10 O -0.541 6.541 11 O -0.349 6.349 12 C 0.069 3.931 13 C -0.167 4.167 14 C -0.144 4.144 15 C -0.049 4.049 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.168 4.168 19 C 0.046 3.954 20 C -0.447 4.447 21 H 0.098 0.902 22 C 0.033 3.967 23 N -0.801 5.801 24 Si 0.989 3.011 25 H -0.254 1.254 26 H -0.268 1.268 27 H -0.258 1.258 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 10.723 1.903 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.160 4.160 3 N -0.164 5.164 4 C -0.162 4.162 5 C 0.037 3.963 6 C -0.167 4.167 7 C -0.059 4.059 8 C -0.171 4.171 9 C 0.367 3.633 10 O -0.433 6.433 11 O -0.266 6.266 12 C 0.014 3.986 13 C -0.224 4.224 14 C -0.200 4.200 15 C -0.067 4.067 16 C -0.154 4.154 17 C -0.143 4.143 18 C -0.192 4.192 19 C 0.041 3.959 20 C -0.474 4.474 21 H 0.116 0.884 22 C -0.186 4.186 23 N -0.425 5.425 24 Si 0.809 3.191 25 H -0.178 1.178 26 H -0.192 1.192 27 H -0.182 1.182 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.424 11.695 1.742 15.120 hybrid contribution 0.031 -1.457 -0.025 1.458 sum 9.454 10.238 1.717 14.041 Atomic orbital electron populations 1.20261 0.88708 1.01841 1.01505 1.21580 0.96960 0.87808 1.09613 1.66784 1.09301 1.30538 1.09749 1.19204 0.89191 0.91979 1.15814 1.19064 0.93398 0.91417 0.92391 1.21338 0.92788 0.98918 1.03643 1.21430 1.01041 0.89994 0.93408 1.19119 0.93502 0.90659 1.13816 1.21197 0.81306 0.89329 0.71499 1.90768 1.66992 1.37216 1.48290 1.86610 1.20482 1.35919 1.83632 1.23082 0.95688 0.81016 0.98769 1.22214 1.02213 1.03465 0.94502 1.21909 0.93201 1.04636 1.00301 1.21160 0.92791 0.98070 0.94725 1.21154 1.00677 0.90868 1.02679 1.21584 1.00120 0.92794 0.99771 1.21382 0.94898 0.97097 1.05847 1.18819 0.93207 0.94213 0.89614 1.20017 1.02377 0.92335 1.32708 0.88377 1.27002 0.94314 1.05565 0.91673 1.69776 1.17645 1.34233 1.20804 0.85119 0.79516 0.74618 0.79881 1.17810 1.19222 1.18196 0.91830 0.92174 0.91191 0.83807 0.82206 0.90920 0.90719 0.88364 0.93968 0.91915 0.88046 0.90685 0.84454 0.85357 0.85230 0.86304 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.62 9.57 71.24 0.68 -1.93 16 2 C -0.01 -0.63 6.86 43.33 0.30 -0.34 16 3 N -0.46 -21.88 9.28 -170.98 -1.59 -23.47 16 4 C -0.03 -1.31 6.74 41.92 0.28 -1.03 16 5 C 0.04 1.48 5.88 -19.99 -0.12 1.36 16 6 C -0.15 -4.72 9.40 22.48 0.21 -4.51 16 7 C -0.04 -1.14 9.60 22.50 0.22 -0.92 16 8 C -0.17 -5.17 5.88 -20.04 -0.12 -5.29 16 9 C 0.52 15.40 7.87 70.30 0.55 15.95 16 10 O -0.54 -18.20 15.59 19.89 0.31 -17.89 16 11 O -0.35 -8.60 9.12 -56.43 -0.51 -9.12 16 12 C 0.07 1.30 3.19 30.59 0.10 1.40 16 13 C -0.17 -2.67 9.55 71.98 0.69 -1.98 16 14 C -0.14 -1.77 9.57 71.98 0.69 -1.09 16 15 C -0.05 -1.60 9.58 22.50 0.22 -1.39 16 16 C -0.13 -4.93 9.55 22.49 0.21 -4.71 16 17 C -0.12 -5.52 9.38 22.30 0.21 -5.31 16 18 C -0.17 -8.29 8.73 22.64 0.20 -8.10 16 19 C 0.05 2.34 5.58 -21.17 -0.12 2.23 16 20 C -0.45 -21.30 8.14 23.40 0.19 -21.11 16 21 H 0.10 4.35 6.87 -2.91 -0.02 4.33 16 22 C 0.03 1.49 5.19 85.31 0.44 1.93 16 23 N -0.80 -37.51 10.93 21.85 0.24 -37.27 16 24 Si 0.99 33.39 29.59 68.60 2.03 35.42 16 25 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 26 H -0.27 -8.64 7.11 99.48 0.71 -7.94 16 27 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.70 6.77 -2.39 -0.02 2.68 16 31 H 0.14 4.10 6.13 -2.91 -0.02 4.08 16 32 H 0.16 3.49 7.60 -2.91 -0.02 3.47 16 33 H 0.07 1.55 7.16 -2.39 -0.02 1.53 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.14 4.17 7.64 -2.91 -0.02 4.14 16 41 H 0.13 4.85 7.51 -2.91 -0.02 4.83 16 42 H 0.13 4.91 6.13 -2.91 -0.02 4.90 16 43 H 0.12 5.95 6.24 -2.91 -0.02 5.94 16 44 H 0.30 12.46 8.29 -92.72 -0.77 11.69 16 Total: -1.00 -59.45 371.56 6.33 -53.12 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 1.02 Total: 34.04 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.83 Total: -34.82 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -1.35 Total: -60.74 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.20 Total: -27.01 kcal Atomic # 14 Polarization: 33.39 SS G_CDS: 2.03 Total: 35.42 kcal Total: -59.45 6.33 -53.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241284211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.715 kcal (2) G-P(sol) polarization free energy of solvation -59.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds