Wall clock time and date at job start Tue Mar 31 2020 14:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50708 * 109.46701 * 2 1 4 4 C 1.37876 * 119.96789 * 264.99818 * 3 2 1 5 5 C 1.39440 * 119.93865 * 180.02562 * 4 3 2 6 6 C 1.48253 * 120.05256 * 180.02562 * 5 4 3 7 7 C 1.39310 * 120.16220 * 310.00039 * 6 5 4 8 8 C 1.38008 * 119.94283 * 180.02562 * 7 6 5 9 9 C 1.38444 * 120.27399 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.32475 * 359.97438 * 9 8 7 11 11 C 1.38737 * 120.05400 * 0.02562 * 10 9 8 12 12 O 1.35675 * 120.13771 * 180.02562 * 11 10 9 13 13 C 1.34803 * 116.99602 * 5.38562 * 12 11 10 14 14 H 1.07999 * 120.00608 * 354.96773 * 13 12 11 15 15 C 1.38645 * 119.99759 * 174.95732 * 13 12 11 16 16 N 1.31567 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00206 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47010 * 60.00361 * 17 15 13 19 19 H 1.48502 * 109.47368 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47275 * 300.00871 * 17 15 13 21 21 C 1.39467 * 119.88948 * 0.27980 * 5 4 3 22 22 C 1.37837 * 119.94386 * 359.41595 * 21 5 4 23 23 C 1.38960 * 119.97128 * 85.02226 * 3 2 1 24 24 N 1.39832 * 119.94736 * 359.97438 * 23 3 2 25 25 C 1.34776 * 120.00338 * 145.30946 * 24 23 3 26 26 C 1.50701 * 120.00251 * 184.41548 * 25 24 23 27 27 O 1.21291 * 119.99626 * 4.41366 * 25 24 23 28 28 H 1.08999 * 109.47464 * 299.99723 * 1 2 3 29 29 H 1.09002 * 109.46966 * 60.00194 * 1 2 3 30 30 H 1.09004 * 109.46464 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47464 * 240.00276 * 2 1 3 32 32 H 1.08994 * 109.47603 * 119.99287 * 2 1 3 33 33 H 1.07994 * 120.03097 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.02886 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.85869 * 180.02562 * 8 7 6 36 36 H 1.07998 * 119.83937 * 179.72203 * 9 8 7 37 37 H 1.08002 * 119.97011 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99624 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.02875 * 179.70612 * 21 5 4 40 40 H 1.07995 * 119.96980 * 180.27569 * 22 21 5 41 41 H 0.97006 * 120.00045 * 325.31289 * 24 23 3 42 42 H 1.09001 * 109.46909 * 0.02562 * 26 25 24 43 43 H 1.09002 * 109.46985 * 119.99635 * 26 25 24 44 44 H 1.08996 * 109.47362 * 239.99917 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3600 2.0356 -1.1899 5 6 2.8251 3.3501 -1.1891 6 6 3.1777 4.0136 -2.4671 7 6 4.0188 3.3775 -3.3773 8 6 4.3445 3.9995 -4.5655 9 6 3.8382 5.2544 -4.8579 10 6 3.0024 5.8949 -3.9640 11 6 2.6661 5.2820 -2.7656 12 8 1.8449 5.9094 -1.8866 13 6 1.3000 7.0765 -2.2842 14 1 1.5869 7.5121 -3.2299 15 6 0.3710 7.7177 -1.4791 16 7 0.0216 7.1872 -0.3269 17 14 -0.3847 9.3346 -2.0303 18 1 -1.1017 9.1334 -3.3151 19 1 -1.3408 9.8113 -0.9988 20 1 0.6879 10.3448 -2.2150 21 6 2.9632 4.0378 0.0163 22 6 2.6282 3.4209 1.2026 23 6 2.1651 2.1103 1.1992 24 7 1.8321 1.4846 2.4046 25 6 2.5330 1.7591 3.5226 26 6 2.2396 1.0123 4.7983 27 8 3.3999 2.6071 3.5019 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.2565 1.4994 -2.1216 34 1 4.4164 2.3987 -3.1530 35 1 4.9964 3.5049 -5.2703 36 1 4.1012 5.7367 -5.7878 37 1 2.6103 6.8736 -4.1982 38 1 -0.6281 7.6360 0.2365 39 1 3.3277 5.0544 0.0199 40 1 2.7307 3.9546 2.1359 41 1 1.0965 0.8530 2.4362 42 1 1.4366 0.2963 4.6236 43 1 3.1348 0.4817 5.1227 44 1 1.9357 1.7184 5.5710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:00 Heat of formation + Delta-G solvation = -20.824046 kcal Electronic energy + Delta-G solvation = -27068.970116 eV Core-core repulsion = 23337.544214 eV Total energy + Delta-G solvation = -3731.425902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40742 -39.20826 -38.05796 -36.34517 -34.77120 -33.65311 -32.29767 -31.48403 -29.92446 -29.22329 -28.92450 -27.12000 -25.34484 -23.65369 -23.09975 -21.53566 -21.39992 -20.23575 -19.79807 -17.95283 -17.46531 -16.96231 -16.76559 -15.61977 -15.34370 -14.85952 -14.59646 -14.38607 -14.18870 -14.04026 -13.78269 -13.59857 -13.26262 -13.22793 -13.10301 -12.88661 -12.72111 -12.54382 -12.28880 -11.91267 -11.70390 -11.64687 -11.48722 -11.28111 -11.00756 -10.87027 -10.83177 -10.61259 -10.56627 -10.38158 -9.96822 -9.62954 -9.32630 -8.83928 -8.28614 -8.17058 -7.55845 -6.99914 -6.43994 -4.02532 1.54495 1.99877 2.27644 2.39933 2.75497 3.13352 3.14337 3.16799 3.22159 3.96267 4.29209 4.60793 4.72222 4.96400 4.98013 5.02723 5.09215 5.23037 5.26055 5.39508 5.44943 5.49127 5.58599 5.65610 5.68310 5.78812 5.84740 5.90199 5.99797 6.04533 6.11598 6.17067 6.27152 6.30922 6.61989 6.67814 6.71496 6.76492 6.89132 7.03389 7.09831 7.22028 7.27342 7.37048 7.48133 7.53846 7.62171 7.81690 7.99216 8.21641 9.00491 9.70022 10.72399 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.004292 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.879140 B = 6522.480738 C = 8096.770364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.099 4.099 5 C -0.017 4.017 6 C -0.132 4.132 7 C -0.061 4.061 8 C -0.216 4.216 9 C -0.071 4.071 10 C -0.234 4.234 11 C 0.164 3.836 12 O -0.163 6.163 13 C -0.396 4.396 14 H 0.091 0.909 15 C 0.043 3.957 16 N -0.854 5.854 17 Si 0.938 3.062 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.066 4.066 22 C -0.109 4.109 23 C 0.125 3.875 24 N -0.667 5.667 25 C 0.504 3.496 26 C -0.168 4.168 27 O -0.527 6.527 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.405 0.595 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -13.897 3.362 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.018 4.018 6 C -0.133 4.133 7 C -0.079 4.079 8 C -0.235 4.235 9 C -0.089 4.089 10 C -0.254 4.254 11 C 0.109 3.891 12 O -0.065 6.065 13 C -0.472 4.472 14 H 0.108 0.892 15 C -0.162 4.162 16 N -0.488 5.488 17 Si 0.763 3.237 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.085 4.085 22 C -0.129 4.129 23 C 0.032 3.968 24 N -0.313 5.313 25 C 0.292 3.708 26 C -0.228 4.228 27 O -0.402 6.402 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.241 0.759 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.811 -13.307 3.871 13.977 hybrid contribution -0.847 0.685 -0.419 1.167 sum 0.965 -12.622 3.452 13.121 Atomic orbital electron populations 1.21788 0.95050 1.01191 1.02592 1.20404 0.95820 0.92962 1.02385 1.19370 1.04497 0.95776 0.92057 1.20774 1.00122 0.94445 0.96432 1.18593 0.97990 0.92924 0.92249 1.17872 1.05759 0.93718 0.95973 1.20715 0.96000 0.98240 0.92982 1.20512 1.06946 0.97389 0.98613 1.20807 0.95721 0.94616 0.97803 1.21115 1.05528 1.02507 0.96221 1.19339 0.90307 0.90449 0.88985 1.83997 1.51998 1.33933 1.36555 1.21285 1.23037 0.96525 1.06333 0.89188 1.25253 0.96122 0.99485 0.95366 1.70051 1.30430 1.38453 1.09847 0.85829 0.79022 0.80410 0.78469 1.19542 1.20309 1.19512 1.21124 0.97252 0.99370 0.90751 1.21081 1.00140 0.92467 0.99209 1.17474 1.03041 0.92072 0.84223 1.43571 1.34702 1.45249 1.07765 1.20934 0.81185 0.83431 0.85249 1.21842 1.04139 1.01479 0.95355 1.90749 1.32344 1.32356 1.84784 0.93016 0.91967 0.92634 0.90962 0.91793 0.86232 0.86940 0.87553 0.87518 0.85440 0.92025 0.85603 0.84871 0.75872 0.90603 0.88594 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.82 37.16 0.36 -1.20 16 2 C -0.08 -0.90 5.46 -27.88 -0.15 -1.05 16 3 C -0.11 -1.82 5.14 -104.48 -0.54 -2.36 16 4 C -0.10 -1.76 9.13 -39.27 -0.36 -2.12 16 5 C -0.02 -0.35 5.28 -104.87 -0.55 -0.91 16 6 C -0.13 -2.84 5.48 -104.73 -0.57 -3.42 16 7 C -0.06 -1.13 9.50 -39.27 -0.37 -1.50 16 8 C -0.22 -3.77 10.03 -39.59 -0.40 -4.17 16 9 C -0.07 -1.32 10.03 -39.55 -0.40 -1.71 16 10 C -0.23 -5.11 9.16 -39.44 -0.36 -5.48 16 11 C 0.16 3.96 6.56 -38.74 -0.25 3.71 16 12 O -0.16 -4.52 8.13 0.36 0.00 -4.52 16 13 C -0.40 -10.92 9.49 30.88 0.29 -10.63 16 14 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 15 C 0.04 1.17 5.49 -17.51 -0.10 1.07 16 16 N -0.85 -24.75 13.67 55.48 0.76 -23.99 16 17 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.07 -1.47 8.78 -39.27 -0.34 -1.81 16 22 C -0.11 -2.24 8.68 -39.44 -0.34 -2.58 16 23 C 0.12 2.15 6.29 -83.66 -0.53 1.62 16 24 N -0.67 -8.82 4.77 -9.83 -0.05 -8.87 16 25 C 0.50 6.82 7.78 -10.99 -0.09 6.73 16 26 C -0.17 -1.33 10.39 36.01 0.37 -0.95 16 27 O -0.53 -9.64 14.50 5.55 0.08 -9.56 16 28 H 0.05 0.53 7.28 -51.93 -0.38 0.15 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.06 0.64 7.42 -51.93 -0.39 0.25 16 33 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 34 H 0.11 1.78 8.04 -52.49 -0.42 1.36 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 3.00 7.71 -52.49 -0.40 2.59 16 40 H 0.13 2.84 6.19 -52.49 -0.32 2.52 16 41 H 0.41 3.95 6.85 -40.82 -0.28 3.67 16 42 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -33.23 369.77 -8.66 -41.89 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.69 Total: 10.78 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -4.32 Total: -26.76 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.71 Total: -32.86 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.23 -8.66 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.069 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds