Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50708 * 109.46701 * 2 1 4 4 C 1.37876 * 119.96789 * 264.99818 * 3 2 1 5 5 C 1.39440 * 119.93865 * 180.02562 * 4 3 2 6 6 C 1.48253 * 120.05256 * 180.02562 * 5 4 3 7 7 C 1.39310 * 120.16220 * 310.00039 * 6 5 4 8 8 C 1.38008 * 119.94283 * 180.02562 * 7 6 5 9 9 C 1.38444 * 120.27399 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.32475 * 359.97438 * 9 8 7 11 11 C 1.38737 * 120.05400 * 0.02562 * 10 9 8 12 12 O 1.35675 * 120.13771 * 180.02562 * 11 10 9 13 13 C 1.34803 * 116.99602 * 5.38562 * 12 11 10 14 14 H 1.07999 * 120.00608 * 354.96773 * 13 12 11 15 15 C 1.38645 * 119.99759 * 174.95732 * 13 12 11 16 16 N 1.31567 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00206 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47010 * 60.00361 * 17 15 13 19 19 H 1.48502 * 109.47368 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47275 * 300.00871 * 17 15 13 21 21 C 1.39467 * 119.88948 * 0.27980 * 5 4 3 22 22 C 1.37837 * 119.94386 * 359.41595 * 21 5 4 23 23 C 1.38960 * 119.97128 * 85.02226 * 3 2 1 24 24 N 1.39832 * 119.94736 * 359.97438 * 23 3 2 25 25 C 1.34776 * 120.00338 * 145.30946 * 24 23 3 26 26 C 1.50701 * 120.00251 * 184.41548 * 25 24 23 27 27 O 1.21291 * 119.99626 * 4.41366 * 25 24 23 28 28 H 1.08999 * 109.47464 * 299.99723 * 1 2 3 29 29 H 1.09002 * 109.46966 * 60.00194 * 1 2 3 30 30 H 1.09004 * 109.46464 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47464 * 240.00276 * 2 1 3 32 32 H 1.08994 * 109.47603 * 119.99287 * 2 1 3 33 33 H 1.07994 * 120.03097 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.02886 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.85869 * 180.02562 * 8 7 6 36 36 H 1.07998 * 119.83937 * 179.72203 * 9 8 7 37 37 H 1.08002 * 119.97011 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99624 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.02875 * 179.70612 * 21 5 4 40 40 H 1.07995 * 119.96980 * 180.27569 * 22 21 5 41 41 H 0.97006 * 120.00045 * 325.31289 * 24 23 3 42 42 H 1.09001 * 109.46909 * 0.02562 * 26 25 24 43 43 H 1.09002 * 109.46985 * 119.99635 * 26 25 24 44 44 H 1.08996 * 109.47362 * 239.99917 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3600 2.0356 -1.1899 5 6 2.8251 3.3501 -1.1891 6 6 3.1777 4.0136 -2.4671 7 6 4.0188 3.3775 -3.3773 8 6 4.3445 3.9995 -4.5655 9 6 3.8382 5.2544 -4.8579 10 6 3.0024 5.8949 -3.9640 11 6 2.6661 5.2820 -2.7656 12 8 1.8449 5.9094 -1.8866 13 6 1.3000 7.0765 -2.2842 14 1 1.5869 7.5121 -3.2299 15 6 0.3710 7.7177 -1.4791 16 7 0.0216 7.1872 -0.3269 17 14 -0.3847 9.3346 -2.0303 18 1 -1.1017 9.1334 -3.3151 19 1 -1.3408 9.8113 -0.9988 20 1 0.6879 10.3448 -2.2150 21 6 2.9632 4.0378 0.0163 22 6 2.6282 3.4209 1.2026 23 6 2.1651 2.1103 1.1992 24 7 1.8321 1.4846 2.4046 25 6 2.5330 1.7591 3.5226 26 6 2.2396 1.0123 4.7983 27 8 3.3999 2.6071 3.5019 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.2565 1.4994 -2.1216 34 1 4.4164 2.3987 -3.1530 35 1 4.9964 3.5049 -5.2703 36 1 4.1012 5.7367 -5.7878 37 1 2.6103 6.8736 -4.1982 38 1 -0.6281 7.6360 0.2365 39 1 3.3277 5.0544 0.0199 40 1 2.7307 3.9546 2.1359 41 1 1.0965 0.8530 2.4362 42 1 1.4366 0.2963 4.6236 43 1 3.1348 0.4817 5.1227 44 1 1.9357 1.7184 5.5710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = -40.841257 kcal Electronic energy + Delta-G solvation = -27069.838127 eV Core-core repulsion = 23337.544214 eV Total energy + Delta-G solvation = -3732.293913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69817 -40.82895 -39.47279 -38.04922 -36.11175 -34.78563 -34.27983 -32.89572 -31.02991 -30.59677 -30.40321 -28.48994 -27.31245 -24.81891 -24.50191 -23.06241 -22.94676 -21.46268 -21.21084 -19.80002 -18.77351 -18.70613 -17.91724 -17.06694 -16.70040 -16.32585 -16.24160 -15.91149 -15.53206 -15.40790 -15.29985 -15.05546 -14.67661 -14.52555 -14.46023 -14.28186 -14.07332 -13.55707 -13.44193 -13.21077 -13.12098 -13.06400 -12.79983 -12.70866 -12.48654 -12.43341 -12.21640 -12.11501 -11.87722 -11.81622 -11.31980 -11.15697 -10.87160 -10.79899 -9.81796 -9.65055 -9.14243 -8.60542 -8.45140 -6.12343 0.03916 0.50103 0.71125 0.82211 1.31933 1.42920 1.47675 1.60123 2.14829 2.16116 2.75947 2.91022 3.19953 3.51944 3.78048 3.80932 3.87426 4.00165 4.20582 4.25851 4.31653 4.37258 4.48172 4.50907 4.58417 4.59980 4.62470 4.64758 4.72171 4.79907 4.96227 5.05517 5.08815 5.11366 5.12840 5.18632 5.19984 5.35018 5.43534 5.47523 5.57578 5.60623 5.69307 5.76235 5.84708 6.02435 6.13796 6.24971 6.45505 6.98340 7.15749 7.81104 8.76062 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.004292 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.879140 B = 6522.480738 C = 8096.770364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.102 4.102 4 C -0.098 4.098 5 C -0.040 4.040 6 C -0.142 4.142 7 C -0.061 4.061 8 C -0.190 4.190 9 C -0.070 4.070 10 C -0.250 4.250 11 C 0.122 3.878 12 O -0.211 6.211 13 C -0.417 4.417 14 H 0.099 0.901 15 C -0.018 4.018 16 N -0.912 5.912 17 Si 1.014 2.986 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.260 1.260 21 C -0.096 4.096 22 C -0.132 4.132 23 C 0.129 3.871 24 N -0.655 5.655 25 C 0.496 3.504 26 C -0.156 4.156 27 O -0.583 6.583 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.426 0.574 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -17.649 1.743 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.105 4.105 4 C -0.116 4.116 5 C -0.041 4.041 6 C -0.143 4.143 7 C -0.079 4.079 8 C -0.209 4.209 9 C -0.088 4.088 10 C -0.270 4.270 11 C 0.071 3.929 12 O -0.116 6.116 13 C -0.494 4.494 14 H 0.116 0.884 15 C -0.216 4.216 16 N -0.549 5.549 17 Si 0.833 3.167 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.184 1.184 21 C -0.115 4.115 22 C -0.152 4.152 23 C 0.035 3.965 24 N -0.302 5.302 25 C 0.287 3.713 26 C -0.215 4.215 27 O -0.462 6.462 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.266 0.734 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.909 -17.121 2.223 17.370 hybrid contribution -0.656 1.607 -0.017 1.736 sum 1.253 -15.514 2.206 15.720 Atomic orbital electron populations 1.21793 0.94048 1.03025 1.01672 1.20535 0.96436 0.89545 1.04587 1.19895 1.02088 0.97944 0.90552 1.21090 0.99034 0.93101 0.98379 1.18736 0.99553 0.94458 0.91360 1.18298 1.05973 0.93175 0.96889 1.21162 0.94631 0.99489 0.92575 1.21111 1.05051 0.96375 0.98334 1.21243 0.94166 0.95059 0.98301 1.21271 1.06730 1.02584 0.96386 1.19963 0.91011 0.91936 0.90000 1.83992 1.54432 1.34709 1.38502 1.21779 1.23478 0.97208 1.06893 0.88371 1.26497 0.96432 1.03463 0.95254 1.70225 1.32169 1.40814 1.11705 0.84721 0.78219 0.75344 0.78393 1.18101 1.19765 1.18394 1.20877 0.99883 0.98031 0.92666 1.20984 1.02117 0.94492 0.97650 1.17543 1.01510 0.90839 0.86612 1.43586 1.35230 1.44954 1.06475 1.22135 0.79889 0.82700 0.86617 1.21894 1.06219 1.01697 0.91696 1.90740 1.34872 1.34968 1.85647 0.93097 0.93897 0.89387 0.89075 0.89335 0.83588 0.83566 0.82820 0.83683 0.86380 0.92157 0.89869 0.87116 0.73418 0.86792 0.87064 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.82 71.98 0.71 -1.89 16 2 C -0.07 -1.41 5.46 29.85 0.16 -1.25 16 3 C -0.10 -3.13 5.14 -19.77 -0.10 -3.23 16 4 C -0.10 -3.43 9.13 22.47 0.21 -3.23 16 5 C -0.04 -1.79 5.28 -20.03 -0.11 -1.89 16 6 C -0.14 -6.33 5.48 -19.93 -0.11 -6.44 16 7 C -0.06 -2.11 9.50 22.47 0.21 -1.90 16 8 C -0.19 -5.92 10.03 22.26 0.22 -5.69 16 9 C -0.07 -2.42 10.03 22.29 0.22 -2.20 16 10 C -0.25 -11.22 9.16 22.36 0.20 -11.02 16 11 C 0.12 6.29 6.56 22.81 0.15 6.44 16 12 O -0.21 -12.87 8.13 -21.63 -0.18 -13.05 16 13 C -0.42 -24.85 9.49 67.92 0.64 -24.21 16 14 H 0.10 5.38 5.21 -2.91 -0.02 5.37 16 15 C -0.02 -1.06 5.49 84.83 0.47 -0.59 16 16 N -0.91 -57.28 13.67 21.61 0.30 -56.98 16 17 Si 1.01 44.12 29.55 68.60 2.03 46.15 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.10 -4.72 8.78 22.47 0.20 -4.53 16 22 C -0.13 -5.96 8.68 22.36 0.19 -5.77 16 23 C 0.13 4.53 6.29 38.22 0.24 4.77 16 24 N -0.65 -16.63 4.77 -303.40 -1.45 -18.08 16 25 C 0.50 13.20 7.78 87.66 0.68 13.88 16 26 C -0.16 -2.03 10.39 71.24 0.74 -1.29 16 27 O -0.58 -22.49 14.50 -3.06 -0.04 -22.53 16 28 H 0.05 0.89 7.28 -2.39 -0.02 0.88 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16 32 H 0.09 1.32 7.42 -2.39 -0.02 1.31 16 33 H 0.15 4.26 8.04 -2.91 -0.02 4.24 16 34 H 0.15 4.07 8.04 -2.91 -0.02 4.05 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 38 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 39 H 0.08 4.65 7.71 -2.91 -0.02 4.63 16 40 H 0.11 5.36 6.19 -2.91 -0.02 5.35 16 41 H 0.43 7.07 6.85 -92.70 -0.64 6.43 16 42 H 0.11 0.62 7.92 -2.39 -0.02 0.60 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -84.79 369.77 5.99 -78.80 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.40 Total: 35.73 kcal Atomic # 6 Polarization: -54.97 SS G_CDS: 4.94 Total: -50.03 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -1.15 Total: -75.06 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.22 Total: -35.58 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -84.79 5.99 -78.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.955 kcal (2) G-P(sol) polarization free energy of solvation -84.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds