Wall clock time and date at job start Tue Mar 31 2020 14:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47228 * 2 1 4 4 C 1.38226 * 119.89860 * 89.99276 * 3 2 1 5 5 C 1.38935 * 120.18042 * 180.02562 * 4 3 2 6 6 N 1.39946 * 120.00579 * 179.72472 * 5 4 3 7 7 C 1.34775 * 119.99772 * 145.31266 * 6 5 4 8 8 C 1.50703 * 119.99971 * 174.53922 * 7 6 5 9 9 O 1.21289 * 120.00077 * 354.53684 * 7 6 5 10 10 C 1.38667 * 119.98835 * 0.02562 * 5 4 3 11 11 C 1.39263 * 119.79698 * 0.03870 * 10 5 4 12 12 C 1.48295 * 120.08999 * 179.97438 * 11 10 5 13 13 C 1.39293 * 120.16031 * 129.95286 * 12 11 10 14 14 C 1.38006 * 119.94657 * 179.97438 * 13 12 11 15 15 C 1.38454 * 120.27293 * 0.02562 * 14 13 12 16 16 C 1.38108 * 120.32038 * 359.97438 * 15 14 13 17 17 C 1.38765 * 120.05089 * 359.74464 * 16 15 14 18 18 O 1.35659 * 120.13779 * 180.27906 * 17 16 15 19 19 C 1.34817 * 116.99998 * 5.61603 * 18 17 16 20 20 H 1.08003 * 119.99969 * 5.37735 * 19 18 17 21 21 C 1.38649 * 120.00009 * 185.36432 * 19 18 17 22 22 N 1.31553 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99731 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47122 * 60.00791 * 23 21 19 25 25 H 1.48499 * 109.47145 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47209 * 300.00387 * 23 21 19 27 27 C 1.38031 * 119.89715 * 270.02675 * 3 2 1 28 28 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47162 * 299.99760 * 1 2 3 30 30 H 1.08999 * 109.46994 * 60.00599 * 1 2 3 31 31 H 1.09003 * 109.47521 * 240.00016 * 2 1 3 32 32 H 1.09003 * 109.47384 * 119.99680 * 2 1 3 33 33 H 1.07992 * 119.91009 * 0.03289 * 4 3 2 34 34 H 0.97000 * 120.00231 * 325.32067 * 6 5 4 35 35 H 1.08999 * 109.46730 * 60.00210 * 8 7 6 36 36 H 1.09004 * 109.47158 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46889 * 299.99823 * 8 7 6 38 38 H 1.08006 * 120.10545 * 179.97438 * 10 5 4 39 39 H 1.07998 * 120.02266 * 359.96349 * 13 12 11 40 40 H 1.08003 * 119.86466 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.83738 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.97770 * 179.97438 * 16 15 14 43 43 H 0.96999 * 119.99902 * 179.97438 * 22 21 19 44 44 H 1.08001 * 119.99107 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0705 1.1983 5 6 2.7245 3.3806 1.2051 6 7 2.9502 4.0367 2.4204 7 6 3.9648 4.9167 2.5329 8 6 4.1337 5.7142 3.8004 9 8 4.7421 5.0666 1.6139 10 6 2.9566 4.0399 0.0075 11 6 2.7239 3.3851 -1.1993 12 6 2.9694 4.0842 -2.4839 13 6 3.7321 3.4751 -3.4776 14 6 3.9574 4.1294 -4.6716 15 6 3.4286 5.3908 -4.8868 16 6 2.6707 6.0051 -3.9093 17 6 2.4310 5.3569 -2.7060 18 8 1.6820 5.9564 -1.7468 19 6 1.1029 7.1309 -2.0674 20 1 1.1731 7.5100 -3.0762 21 6 0.4169 7.8519 -1.1020 22 7 0.3315 7.3902 0.1269 23 14 -0.3862 9.4788 -1.5465 24 1 -1.3952 9.2577 -2.6134 25 1 -1.0509 10.0470 -0.3462 26 1 0.6493 10.4254 -2.0330 27 6 2.2612 2.0697 -1.1966 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0812 1.5584 2.1317 34 1 2.3764 3.8582 3.1819 35 1 4.2799 5.0349 4.6402 36 1 5.0016 6.3669 3.7061 37 1 3.2420 6.3172 3.9717 38 1 3.3159 5.0584 0.0106 39 1 4.1470 2.4915 -3.3136 40 1 4.5494 3.6560 -5.4410 41 1 3.6096 5.8967 -5.8237 42 1 2.2612 6.9893 -4.0829 43 1 -0.1481 7.8949 0.8023 44 1 2.0805 1.5589 -2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:04 Heat of formation + Delta-G solvation = -24.058915 kcal Electronic energy + Delta-G solvation = -27395.951140 eV Core-core repulsion = 23664.384963 eV Total energy + Delta-G solvation = -3731.566176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12170 -39.10758 -38.05627 -36.30607 -34.78744 -33.60473 -32.27556 -31.23987 -29.84472 -29.09375 -28.04063 -27.87659 -25.34457 -23.73298 -22.85004 -21.79188 -21.31325 -20.19421 -19.40738 -17.93865 -17.35848 -16.62340 -16.30328 -15.66728 -15.31608 -14.87203 -14.63769 -14.42799 -14.34591 -13.95616 -13.67555 -13.52077 -13.40743 -13.17914 -12.83611 -12.64624 -12.50170 -12.48148 -12.11202 -11.80700 -11.67398 -11.49334 -11.32880 -11.30010 -11.00200 -10.84227 -10.78476 -10.70311 -10.46262 -10.38218 -9.90153 -9.48627 -9.30575 -8.83567 -8.48321 -7.74367 -7.56993 -7.06914 -6.44576 -4.01815 1.61606 1.93472 2.36016 2.44295 2.97211 3.12667 3.13930 3.15405 3.42962 3.96170 4.30493 4.64236 4.95754 5.03442 5.12303 5.13999 5.25531 5.30817 5.40517 5.47239 5.53606 5.62029 5.69110 5.74152 5.78064 5.84948 5.89261 5.95899 5.99055 6.12414 6.16283 6.25139 6.32408 6.35712 6.52109 6.72302 6.77122 6.82954 6.97979 7.05874 7.08710 7.20815 7.31586 7.38764 7.47947 7.66051 7.73882 7.84490 7.99472 8.46470 9.00652 9.71243 10.72185 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007889 B = 0.005491 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.449646 B = 5098.435675 C = 6524.154540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.076 4.076 4 C -0.155 4.155 5 C 0.146 3.854 6 N -0.671 5.671 7 C 0.510 3.490 8 C -0.171 4.171 9 O -0.523 6.523 10 C -0.077 4.077 11 C 0.008 3.992 12 C -0.132 4.132 13 C -0.059 4.059 14 C -0.215 4.215 15 C -0.071 4.071 16 C -0.234 4.234 17 C 0.165 3.835 18 O -0.163 6.163 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.043 3.957 22 N -0.855 5.855 23 Si 0.938 3.062 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.127 4.127 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.406 0.594 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.268 0.732 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -9.370 4.591 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.076 4.076 4 C -0.175 4.175 5 C 0.053 3.947 6 N -0.316 5.316 7 C 0.298 3.702 8 C -0.230 4.230 9 O -0.398 6.398 10 C -0.097 4.097 11 C 0.007 3.993 12 C -0.134 4.134 13 C -0.077 4.077 14 C -0.234 4.234 15 C -0.089 4.089 16 C -0.253 4.253 17 C 0.110 3.890 18 O -0.065 6.065 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.162 4.162 22 N -0.490 5.490 23 Si 0.762 3.238 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.146 4.146 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.241 0.759 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.791 -9.172 4.459 10.574 hybrid contribution -0.797 0.992 0.106 1.277 sum 1.995 -8.180 4.565 9.578 Atomic orbital electron populations 1.21751 0.95028 1.01038 1.02570 1.20445 0.95958 0.92824 1.02179 1.19371 1.00024 0.95767 0.92479 1.20526 1.06459 0.92835 0.97695 1.17536 1.00464 0.91238 0.85507 1.43441 1.32258 1.43142 1.12756 1.20866 0.79909 0.79423 0.90043 1.21896 1.05324 1.00726 0.95086 1.90764 1.42994 1.64805 1.41234 1.21176 0.98620 1.00199 0.89732 1.18440 0.96318 0.92597 0.91943 1.17847 1.06860 0.93762 0.94904 1.20702 0.96373 0.98298 0.92349 1.20514 1.07554 0.97121 0.98215 1.20806 0.95838 0.94678 0.97570 1.21113 1.06736 1.02232 0.95197 1.19334 0.89711 0.91005 0.88914 1.84008 1.54112 1.34056 1.34359 1.21281 1.31849 0.96514 0.97221 0.89263 1.25229 0.97186 0.99145 0.94648 1.70046 1.39235 1.37990 1.01704 0.85834 0.79282 0.80485 0.78165 1.19538 1.20331 1.19537 1.20960 1.02037 0.94471 0.97114 0.92918 0.92618 0.92333 0.91315 0.91590 0.86704 0.75855 0.89669 0.88900 0.88941 0.84545 0.86877 0.87485 0.87478 0.85434 0.92214 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.08 -0.93 6.06 -27.88 -0.17 -1.10 16 3 C -0.08 -1.21 5.13 -104.70 -0.54 -1.75 16 4 C -0.15 -2.52 9.61 -39.33 -0.38 -2.89 16 5 C 0.15 2.79 6.24 -83.74 -0.52 2.27 16 6 N -0.67 -10.76 5.34 -9.89 -0.05 -10.82 16 7 C 0.51 8.71 7.66 -10.99 -0.08 8.63 16 8 C -0.17 -1.96 10.32 36.01 0.37 -1.59 16 9 O -0.52 -11.51 14.89 5.55 0.08 -11.43 16 10 C -0.08 -1.77 7.40 -39.04 -0.29 -2.06 16 11 C 0.01 0.17 5.27 -104.93 -0.55 -0.38 16 12 C -0.13 -2.98 5.49 -104.72 -0.57 -3.56 16 13 C -0.06 -1.14 9.50 -39.27 -0.37 -1.51 16 14 C -0.22 -3.91 10.03 -39.59 -0.40 -4.31 16 15 C -0.07 -1.35 10.03 -39.55 -0.40 -1.75 16 16 C -0.23 -5.26 9.13 -39.43 -0.36 -5.62 16 17 C 0.17 4.14 6.56 -38.74 -0.25 3.88 16 18 O -0.16 -4.64 8.13 0.37 0.00 -4.64 16 19 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 20 H 0.09 2.33 5.29 -52.48 -0.28 2.05 16 21 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 22 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 23 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 C -0.13 -2.33 9.15 -39.21 -0.36 -2.68 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.41 4.84 8.82 -40.82 -0.36 4.48 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.07 8.12 -51.93 -0.42 0.64 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.14 3.66 6.18 -52.48 -0.32 3.33 16 39 H 0.11 1.88 8.04 -52.49 -0.42 1.46 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.13 2.84 5.71 -52.49 -0.30 2.54 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -33.94 374.87 -8.78 -42.72 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.88 Total: 12.13 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -4.31 Total: -25.38 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.71 Total: -34.55 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.09 Total: -16.07 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.94 -8.78 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.659 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds