Wall clock time and date at job start Tue Mar 31 2020 14:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47228 * 2 1 4 4 C 1.38226 * 119.89860 * 89.99276 * 3 2 1 5 5 C 1.38935 * 120.18042 * 180.02562 * 4 3 2 6 6 N 1.39946 * 120.00579 * 179.72472 * 5 4 3 7 7 C 1.34775 * 119.99772 * 145.31266 * 6 5 4 8 8 C 1.50703 * 119.99971 * 174.53922 * 7 6 5 9 9 O 1.21289 * 120.00077 * 354.53684 * 7 6 5 10 10 C 1.38667 * 119.98835 * 0.02562 * 5 4 3 11 11 C 1.39263 * 119.79698 * 0.03870 * 10 5 4 12 12 C 1.48295 * 120.08999 * 179.97438 * 11 10 5 13 13 C 1.39293 * 120.16031 * 129.95286 * 12 11 10 14 14 C 1.38006 * 119.94657 * 179.97438 * 13 12 11 15 15 C 1.38454 * 120.27293 * 0.02562 * 14 13 12 16 16 C 1.38108 * 120.32038 * 359.97438 * 15 14 13 17 17 C 1.38765 * 120.05089 * 359.74464 * 16 15 14 18 18 O 1.35659 * 120.13779 * 180.27906 * 17 16 15 19 19 C 1.34817 * 116.99998 * 5.61603 * 18 17 16 20 20 H 1.08003 * 119.99969 * 5.37735 * 19 18 17 21 21 C 1.38649 * 120.00009 * 185.36432 * 19 18 17 22 22 N 1.31553 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99731 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47122 * 60.00791 * 23 21 19 25 25 H 1.48499 * 109.47145 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47209 * 300.00387 * 23 21 19 27 27 C 1.38031 * 119.89715 * 270.02675 * 3 2 1 28 28 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47162 * 299.99760 * 1 2 3 30 30 H 1.08999 * 109.46994 * 60.00599 * 1 2 3 31 31 H 1.09003 * 109.47521 * 240.00016 * 2 1 3 32 32 H 1.09003 * 109.47384 * 119.99680 * 2 1 3 33 33 H 1.07992 * 119.91009 * 0.03289 * 4 3 2 34 34 H 0.97000 * 120.00231 * 325.32067 * 6 5 4 35 35 H 1.08999 * 109.46730 * 60.00210 * 8 7 6 36 36 H 1.09004 * 109.47158 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46889 * 299.99823 * 8 7 6 38 38 H 1.08006 * 120.10545 * 179.97438 * 10 5 4 39 39 H 1.07998 * 120.02266 * 359.96349 * 13 12 11 40 40 H 1.08003 * 119.86466 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.83738 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.97770 * 179.97438 * 16 15 14 43 43 H 0.96999 * 119.99902 * 179.97438 * 22 21 19 44 44 H 1.08001 * 119.99107 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0705 1.1983 5 6 2.7245 3.3806 1.2051 6 7 2.9502 4.0367 2.4204 7 6 3.9648 4.9167 2.5329 8 6 4.1337 5.7142 3.8004 9 8 4.7421 5.0666 1.6139 10 6 2.9566 4.0399 0.0075 11 6 2.7239 3.3851 -1.1993 12 6 2.9694 4.0842 -2.4839 13 6 3.7321 3.4751 -3.4776 14 6 3.9574 4.1294 -4.6716 15 6 3.4286 5.3908 -4.8868 16 6 2.6707 6.0051 -3.9093 17 6 2.4310 5.3569 -2.7060 18 8 1.6820 5.9564 -1.7468 19 6 1.1029 7.1309 -2.0674 20 1 1.1731 7.5100 -3.0762 21 6 0.4169 7.8519 -1.1020 22 7 0.3315 7.3902 0.1269 23 14 -0.3862 9.4788 -1.5465 24 1 -1.3952 9.2577 -2.6134 25 1 -1.0509 10.0470 -0.3462 26 1 0.6493 10.4254 -2.0330 27 6 2.2612 2.0697 -1.1966 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0812 1.5584 2.1317 34 1 2.3764 3.8582 3.1819 35 1 4.2799 5.0349 4.6402 36 1 5.0016 6.3669 3.7061 37 1 3.2420 6.3172 3.9717 38 1 3.3159 5.0584 0.0106 39 1 4.1470 2.4915 -3.3136 40 1 4.5494 3.6560 -5.4410 41 1 3.6096 5.8967 -5.8237 42 1 2.2612 6.9893 -4.0829 43 1 -0.1481 7.8949 0.8023 44 1 2.0805 1.5589 -2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:03 Heat of formation + Delta-G solvation = -45.109530 kcal Electronic energy + Delta-G solvation = -27396.863963 eV Core-core repulsion = 23664.384963 eV Total energy + Delta-G solvation = -3732.479000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56570 -40.77643 -39.53321 -38.05730 -36.15333 -34.95015 -34.26487 -32.64251 -31.04408 -30.72263 -29.53546 -29.21493 -27.33877 -24.96139 -24.37315 -23.12649 -22.96780 -21.72040 -20.78890 -19.82187 -18.93931 -18.15963 -17.76028 -17.11492 -16.69703 -16.51746 -16.27492 -16.09203 -15.78313 -15.39009 -15.28202 -15.06069 -14.74477 -14.48875 -14.32988 -14.15193 -13.91352 -13.56496 -13.48086 -13.21471 -13.11325 -13.08343 -12.75056 -12.67371 -12.50325 -12.42862 -12.23443 -12.13128 -11.90494 -11.72050 -11.40073 -11.15335 -10.85985 -10.80360 -10.00590 -9.34716 -9.03851 -8.78150 -8.45906 -6.12450 0.09022 0.44506 0.70691 0.86367 1.30607 1.41695 1.45642 1.62209 2.15072 2.18990 2.76472 2.92190 3.20213 3.48419 3.73961 3.84590 3.90896 4.16802 4.22907 4.26678 4.30188 4.40801 4.43573 4.54755 4.58086 4.59670 4.61266 4.64320 4.76765 4.76876 4.96611 5.04746 5.08334 5.12021 5.13224 5.16351 5.23727 5.41120 5.45412 5.52454 5.55902 5.62308 5.72264 5.74850 5.85200 6.01778 6.18632 6.22406 6.47338 6.97101 7.18715 7.79401 8.75330 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007889 B = 0.005491 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.449646 B = 5098.435675 C = 6524.154540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.066 4.066 4 C -0.146 4.146 5 C 0.132 3.868 6 N -0.661 5.661 7 C 0.496 3.504 8 C -0.158 4.158 9 O -0.584 6.584 10 C -0.114 4.114 11 C -0.021 4.021 12 C -0.146 4.146 13 C -0.062 4.062 14 C -0.192 4.192 15 C -0.070 4.070 16 C -0.251 4.251 17 C 0.121 3.879 18 O -0.208 6.208 19 C -0.420 4.420 20 H 0.095 0.905 21 C -0.016 4.016 22 N -0.905 5.905 23 Si 1.013 2.987 24 H -0.259 1.259 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.157 0.843 34 H 0.427 0.573 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.270 0.730 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 -11.998 4.264 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.067 4.067 4 C -0.166 4.166 5 C 0.038 3.962 6 N -0.308 5.308 7 C 0.287 3.713 8 C -0.217 4.217 9 O -0.463 6.463 10 C -0.134 4.134 11 C -0.022 4.022 12 C -0.148 4.148 13 C -0.080 4.080 14 C -0.210 4.210 15 C -0.087 4.087 16 C -0.270 4.270 17 C 0.069 3.931 18 O -0.114 6.114 19 C -0.496 4.496 20 H 0.112 0.888 21 C -0.215 4.215 22 N -0.542 5.542 23 Si 0.832 3.168 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.187 1.187 27 C -0.151 4.151 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.175 0.825 34 H 0.266 0.734 35 H 0.148 0.852 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.165 0.835 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.790 -11.838 4.129 12.844 hybrid contribution -0.635 1.571 0.081 1.697 sum 2.155 -10.266 4.209 11.303 Atomic orbital electron populations 1.21749 0.94532 1.02531 1.01502 1.20545 0.96130 0.89928 1.04318 1.19932 0.97653 0.97680 0.91411 1.20976 1.04428 0.91400 0.99758 1.17795 1.00367 0.92576 0.85414 1.43444 1.32219 1.42605 1.12485 1.22003 0.79095 0.79153 0.91099 1.21917 1.05662 1.00807 0.93297 1.90735 1.45316 1.66545 1.43728 1.20877 1.01856 0.98355 0.92333 1.18646 0.98018 0.94248 0.91254 1.18360 1.06791 0.93282 0.96336 1.21152 0.95287 0.99600 0.91989 1.21114 1.05391 0.96138 0.98341 1.21246 0.94299 0.95203 0.97997 1.21276 1.07932 1.02262 0.95556 1.19973 0.91015 0.92442 0.89628 1.83993 1.56477 1.34810 1.36107 1.21751 1.32772 0.97156 0.97948 0.88766 1.26460 0.97592 1.03007 0.94397 1.70201 1.41080 1.39973 1.02961 0.84739 0.78378 0.75274 0.78369 1.18306 1.19278 1.18664 1.21180 1.01718 0.93097 0.99077 0.90148 0.93065 0.94129 0.89766 0.88935 0.82503 0.73429 0.85175 0.89139 0.87889 0.90207 0.83758 0.82728 0.83535 0.86373 0.92073 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.89 71.98 0.71 -2.23 16 2 C -0.07 -1.48 6.06 29.85 0.18 -1.30 16 3 C -0.07 -2.01 5.13 -19.91 -0.10 -2.11 16 4 C -0.15 -4.55 9.61 22.43 0.22 -4.34 16 5 C 0.13 5.29 6.24 38.11 0.24 5.53 16 6 N -0.66 -21.91 5.34 -303.59 -1.62 -23.53 16 7 C 0.50 17.95 7.66 87.66 0.67 18.62 16 8 C -0.16 -3.58 10.32 71.24 0.74 -2.84 16 9 O -0.58 -28.13 14.89 -3.06 -0.05 -28.18 16 10 C -0.11 -5.69 7.40 22.62 0.17 -5.52 16 11 C -0.02 -0.97 5.27 -20.06 -0.11 -1.07 16 12 C -0.15 -6.94 5.49 -19.93 -0.11 -7.05 16 13 C -0.06 -2.35 9.50 22.47 0.21 -2.14 16 14 C -0.19 -6.42 10.03 22.27 0.22 -6.20 16 15 C -0.07 -2.56 10.03 22.29 0.22 -2.34 16 16 C -0.25 -11.82 9.13 22.36 0.20 -11.62 16 17 C 0.12 6.52 6.56 22.81 0.15 6.67 16 18 O -0.21 -13.05 8.13 -21.60 -0.18 -13.23 16 19 C -0.42 -25.42 9.44 67.92 0.64 -24.78 16 20 H 0.09 5.31 5.29 -2.91 -0.02 5.29 16 21 C -0.02 -0.92 5.49 84.83 0.47 -0.45 16 22 N -0.91 -55.59 13.67 21.61 0.30 -55.30 16 23 Si 1.01 44.04 29.55 68.60 2.03 46.07 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 27 C -0.13 -4.83 9.15 22.51 0.21 -4.62 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 32 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.43 9.94 8.82 -92.71 -0.82 9.12 16 35 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.11 8.12 -2.38 -0.02 2.09 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 4.86 6.18 -2.91 -0.02 4.84 16 39 H 0.14 4.46 8.04 -2.91 -0.02 4.44 16 40 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 42 H 0.12 5.62 5.71 -2.91 -0.02 5.61 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.14 4.29 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -86.48 374.87 5.62 -80.86 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.21 Total: 41.11 kcal Atomic # 6 Polarization: -52.73 SS G_CDS: 4.93 Total: -47.80 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.32 Total: -78.83 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.22 Total: -41.41 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -86.48 5.62 -80.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.746 kcal (2) G-P(sol) polarization free energy of solvation -86.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds