Wall clock time and date at job start Tue Mar 31 2020 14:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47040 * 2 1 4 4 C 1.37874 * 119.97373 * 265.00067 * 3 2 1 5 5 C 1.39420 * 119.94529 * 179.97438 * 4 3 2 6 6 C 1.48284 * 120.05306 * 179.97438 * 5 4 3 7 7 C 1.39451 * 120.05774 * 359.72527 * 6 5 4 8 8 C 1.37831 * 119.94506 * 179.76442 * 7 6 5 9 9 C 1.39003 * 120.05787 * 0.52872 * 8 7 6 10 10 O 1.35701 * 119.94594 * 179.71725 * 9 8 7 11 11 C 1.34813 * 116.99406 * 185.38313 * 10 9 8 12 12 H 1.07997 * 120.00398 * 354.96076 * 11 10 9 13 13 C 1.38643 * 119.99577 * 174.96138 * 11 10 9 14 14 N 1.31564 * 120.00060 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99894 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46987 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46821 * 120.00328 * 15 13 11 18 18 H 1.48500 * 109.47137 * 240.00086 * 15 13 11 19 19 C 1.39002 * 120.10596 * 359.70696 * 9 8 7 20 20 C 1.37840 * 120.05412 * 0.03479 * 19 9 8 21 21 C 1.39458 * 119.89058 * 0.02562 * 5 4 3 22 22 C 1.37834 * 119.94631 * 0.02562 * 21 5 4 23 23 C 1.38962 * 119.96709 * 84.72717 * 3 2 1 24 24 N 1.39836 * 119.94978 * 359.97438 * 23 3 2 25 25 C 1.34772 * 119.99855 * 145.04974 * 24 23 3 26 26 C 1.50704 * 120.00166 * 184.42525 * 25 24 23 27 27 O 1.21292 * 120.00275 * 4.42482 * 25 24 23 28 28 H 1.08998 * 109.46997 * 59.99407 * 1 2 3 29 29 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46942 * 300.00200 * 1 2 3 31 31 H 1.08998 * 109.46997 * 120.00593 * 2 1 3 32 32 H 1.09004 * 109.46814 * 240.00261 * 2 1 3 33 33 H 1.08005 * 120.02974 * 359.95883 * 4 3 2 34 34 H 1.08003 * 120.02745 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.97280 * 180.25665 * 8 7 6 36 36 H 0.97007 * 119.99703 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.97591 * 180.02562 * 19 9 8 38 38 H 1.07995 * 120.02692 * 180.02562 * 20 19 9 39 39 H 1.08003 * 120.02987 * 180.02562 * 21 5 4 40 40 H 1.08003 * 119.97687 * 180.02562 * 22 21 5 41 41 H 0.96995 * 120.00067 * 325.04731 * 24 23 3 42 42 H 1.09005 * 109.46392 * 0.02562 * 26 25 24 43 43 H 1.09001 * 109.46851 * 119.99735 * 26 25 24 44 44 H 1.08995 * 109.47070 * 240.00216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3601 2.0356 -1.1898 5 6 2.8243 3.3503 -1.1892 6 6 3.1780 4.0135 -2.4673 7 6 3.0524 3.3215 -3.6715 8 6 3.3772 3.9419 -4.8587 9 6 3.8401 5.2526 -4.8554 10 8 4.1646 5.8593 -6.0251 11 6 4.7117 7.0888 -5.9455 12 1 4.7984 7.5804 -4.9877 13 6 5.1629 7.7224 -7.0932 14 7 5.0568 7.1238 -8.2599 15 14 5.9203 9.4264 -6.9830 16 1 5.9231 9.8763 -5.5679 17 1 7.3151 9.3819 -7.4906 18 1 5.1253 10.3754 -7.8031 19 6 3.9708 5.9429 -3.6560 20 6 3.6422 5.3286 -2.4666 21 6 2.9564 4.0401 0.0157 22 6 2.6284 3.4208 1.2026 23 6 2.1595 2.1121 1.1987 24 7 1.8205 1.4885 2.4036 25 6 2.5193 1.7610 3.5233 26 6 2.2197 1.0160 4.7986 27 8 3.3895 2.6057 3.5046 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 2.2576 1.4991 -2.1216 34 1 2.6976 2.3014 -3.6742 35 1 3.2761 3.4077 -5.7919 36 1 5.3729 7.5669 -9.0629 37 1 4.3303 6.9613 -3.6560 38 1 3.7436 5.8655 -1.5351 39 1 3.3153 5.0587 0.0187 40 1 2.7302 3.9547 2.1359 41 1 1.0824 0.8600 2.4335 42 1 1.4143 0.3029 4.6220 43 1 3.1119 0.4822 5.1258 44 1 1.9162 1.7237 5.5700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:08 Heat of formation + Delta-G solvation = -22.230241 kcal Electronic energy + Delta-G solvation = -25858.023322 eV Core-core repulsion = 22126.536443 eV Total energy + Delta-G solvation = -3731.486879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75517 -39.29115 -38.50179 -36.65319 -34.85344 -33.98300 -32.41070 -31.34972 -30.52533 -29.72460 -29.32743 -27.00851 -25.40628 -24.11672 -23.19220 -22.10958 -21.41127 -20.45794 -19.92461 -18.09962 -17.87193 -17.09446 -17.05328 -15.88872 -15.77120 -15.04807 -14.80002 -14.45327 -14.41341 -14.15817 -13.77810 -13.71681 -13.64818 -13.51522 -13.36432 -13.08561 -12.84226 -12.66181 -12.53044 -12.23637 -12.06094 -11.90290 -11.74863 -11.46557 -11.29996 -11.15703 -11.00721 -10.73815 -10.55129 -10.43327 -10.27182 -9.90525 -9.36619 -8.96264 -8.64841 -8.26559 -8.23927 -6.87435 -6.53012 -4.09260 1.08745 1.54456 2.19858 2.21897 2.61071 2.91323 3.09589 3.11083 3.16587 3.90836 3.94074 4.42756 4.61490 4.65291 4.72855 4.73862 4.98956 5.02340 5.06002 5.11701 5.17502 5.24210 5.26487 5.37546 5.46653 5.51940 5.55371 5.65648 5.69738 5.72315 5.82066 5.97310 6.11393 6.19459 6.23424 6.34558 6.47784 6.53898 6.66348 6.72281 6.87042 7.01229 7.12278 7.20121 7.27310 7.35216 7.40059 7.74967 7.89765 7.92426 8.92480 9.61089 10.64421 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.002308 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.308408 B =12130.969121 C =13181.842447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.099 4.099 4 C -0.113 4.113 5 C -0.005 4.005 6 C -0.158 4.158 7 C -0.057 4.057 8 C -0.193 4.193 9 C 0.159 3.841 10 O -0.171 6.171 11 C -0.391 4.391 12 H 0.095 0.905 13 C 0.039 3.961 14 N -0.858 5.858 15 Si 0.943 3.057 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.275 1.275 19 C -0.235 4.235 20 C -0.053 4.053 21 C -0.119 4.119 22 C -0.107 4.107 23 C 0.113 3.887 24 N -0.668 5.668 25 C 0.505 3.495 26 C -0.169 4.169 27 O -0.528 6.528 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.406 0.594 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -13.709 20.715 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.131 4.131 5 C -0.006 4.006 6 C -0.159 4.159 7 C -0.076 4.076 8 C -0.213 4.213 9 C 0.104 3.896 10 O -0.073 6.073 11 C -0.467 4.467 12 H 0.112 0.888 13 C -0.166 4.166 14 N -0.492 5.492 15 Si 0.767 3.233 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.201 1.201 19 C -0.254 4.254 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.127 4.127 23 C 0.020 3.980 24 N -0.314 5.314 25 C 0.293 3.707 26 C -0.229 4.229 27 O -0.403 6.403 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.243 0.757 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.285 -13.139 20.265 25.533 hybrid contribution 0.055 0.585 0.053 0.590 sum -8.230 -12.553 20.318 25.261 Atomic orbital electron populations 1.21782 0.94852 1.01600 1.02325 1.20471 0.95916 0.92823 1.02898 1.19493 1.02876 0.95709 0.92034 1.20867 1.00849 0.94602 0.96828 1.18830 0.96138 0.93039 0.92576 1.18216 1.11203 0.95149 0.91362 1.20695 0.97492 0.98220 0.91150 1.20146 1.09353 0.93588 0.98182 1.19492 0.92085 0.91604 0.86401 1.83954 1.67509 1.30751 1.25118 1.21439 1.39047 0.90375 0.95833 0.88765 1.25339 0.96868 1.00130 0.94231 1.70053 1.43035 1.37861 0.98266 0.85616 0.78723 0.79994 0.78947 1.18983 1.20039 1.20050 1.21111 1.10418 1.01850 0.92046 1.20845 0.95736 0.93512 0.97006 1.21111 1.01235 1.00190 0.91193 1.21096 0.99873 0.92846 0.98900 1.17468 1.03910 0.92179 0.84421 1.43585 1.34619 1.45604 1.07580 1.20981 0.81058 0.83347 0.85295 1.21853 1.04329 1.01532 0.95178 1.90747 1.32022 1.32684 1.84876 0.91975 0.92329 0.93113 0.91532 0.90586 0.85621 0.86712 0.86270 0.91905 0.85284 0.87041 0.85694 0.84782 0.75725 0.90515 0.88417 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.82 37.16 0.36 -0.65 16 2 C -0.08 -0.70 5.46 -27.88 -0.15 -0.85 16 3 C -0.10 -1.17 5.14 -104.49 -0.54 -1.71 16 4 C -0.11 -1.55 9.05 -39.27 -0.36 -1.90 16 5 C -0.01 -0.08 5.88 -104.87 -0.62 -0.70 16 6 C -0.16 -2.85 5.88 -104.86 -0.62 -3.47 16 7 C -0.06 -1.03 9.42 -39.28 -0.37 -1.40 16 8 C -0.19 -4.05 9.98 -39.45 -0.39 -4.44 16 9 C 0.16 3.81 6.65 -39.01 -0.26 3.56 16 10 O -0.17 -4.82 9.75 0.25 0.00 -4.82 16 11 C -0.39 -10.79 9.48 30.88 0.29 -10.49 16 12 H 0.10 2.41 5.19 -52.49 -0.27 2.14 16 13 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 14 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 15 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.24 -5.11 9.15 -39.44 -0.36 -5.47 16 20 C -0.05 -1.00 9.42 -39.27 -0.37 -1.37 16 21 C -0.12 -1.80 9.42 -39.28 -0.37 -2.17 16 22 C -0.11 -1.54 8.68 -39.44 -0.34 -1.89 16 23 C 0.11 1.41 6.29 -83.65 -0.53 0.89 16 24 N -0.67 -6.08 4.76 -9.83 -0.05 -6.13 16 25 C 0.50 4.98 7.78 -10.99 -0.09 4.89 16 26 C -0.17 -0.82 10.39 36.01 0.37 -0.45 16 27 O -0.53 -7.67 14.50 5.55 0.08 -7.59 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.31 7.24 -51.93 -0.38 -0.07 16 31 H 0.07 0.48 7.44 -51.93 -0.39 0.09 16 32 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 33 H 0.13 1.55 6.19 -52.48 -0.32 1.22 16 34 H 0.12 1.70 6.19 -52.48 -0.32 1.37 16 35 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.13 2.79 5.62 -52.49 -0.30 2.49 16 38 H 0.11 1.81 6.19 -52.49 -0.32 1.49 16 39 H 0.13 1.78 6.19 -52.48 -0.32 1.46 16 40 H 0.13 1.98 6.19 -52.48 -0.32 1.66 16 41 H 0.41 2.37 6.84 -40.82 -0.28 2.09 16 42 H 0.08 0.17 7.92 -51.93 -0.41 -0.24 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -33.28 365.12 -8.46 -41.74 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.31 Total: 6.73 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -4.42 Total: -26.65 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.71 Total: -30.19 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.28 -8.46 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.511 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds