Wall clock time and date at job start Tue Mar 31 2020 14:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47040 * 2 1 4 4 C 1.37874 * 119.97373 * 265.00067 * 3 2 1 5 5 C 1.39420 * 119.94529 * 179.97438 * 4 3 2 6 6 C 1.48284 * 120.05306 * 179.97438 * 5 4 3 7 7 C 1.39451 * 120.05774 * 359.72527 * 6 5 4 8 8 C 1.37831 * 119.94506 * 179.76442 * 7 6 5 9 9 C 1.39003 * 120.05787 * 0.52872 * 8 7 6 10 10 O 1.35701 * 119.94594 * 179.71725 * 9 8 7 11 11 C 1.34813 * 116.99406 * 185.38313 * 10 9 8 12 12 H 1.07997 * 120.00398 * 354.96076 * 11 10 9 13 13 C 1.38643 * 119.99577 * 174.96138 * 11 10 9 14 14 N 1.31564 * 120.00060 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99894 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46987 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46821 * 120.00328 * 15 13 11 18 18 H 1.48500 * 109.47137 * 240.00086 * 15 13 11 19 19 C 1.39002 * 120.10596 * 359.70696 * 9 8 7 20 20 C 1.37840 * 120.05412 * 0.03479 * 19 9 8 21 21 C 1.39458 * 119.89058 * 0.02562 * 5 4 3 22 22 C 1.37834 * 119.94631 * 0.02562 * 21 5 4 23 23 C 1.38962 * 119.96709 * 84.72717 * 3 2 1 24 24 N 1.39836 * 119.94978 * 359.97438 * 23 3 2 25 25 C 1.34772 * 119.99855 * 145.04974 * 24 23 3 26 26 C 1.50704 * 120.00166 * 184.42525 * 25 24 23 27 27 O 1.21292 * 120.00275 * 4.42482 * 25 24 23 28 28 H 1.08998 * 109.46997 * 59.99407 * 1 2 3 29 29 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46942 * 300.00200 * 1 2 3 31 31 H 1.08998 * 109.46997 * 120.00593 * 2 1 3 32 32 H 1.09004 * 109.46814 * 240.00261 * 2 1 3 33 33 H 1.08005 * 120.02974 * 359.95883 * 4 3 2 34 34 H 1.08003 * 120.02745 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.97280 * 180.25665 * 8 7 6 36 36 H 0.97007 * 119.99703 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.97591 * 180.02562 * 19 9 8 38 38 H 1.07995 * 120.02692 * 180.02562 * 20 19 9 39 39 H 1.08003 * 120.02987 * 180.02562 * 21 5 4 40 40 H 1.08003 * 119.97687 * 180.02562 * 22 21 5 41 41 H 0.96995 * 120.00067 * 325.04731 * 24 23 3 42 42 H 1.09005 * 109.46392 * 0.02562 * 26 25 24 43 43 H 1.09001 * 109.46851 * 119.99735 * 26 25 24 44 44 H 1.08995 * 109.47070 * 240.00216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3601 2.0356 -1.1898 5 6 2.8243 3.3503 -1.1892 6 6 3.1780 4.0135 -2.4673 7 6 3.0524 3.3215 -3.6715 8 6 3.3772 3.9419 -4.8587 9 6 3.8401 5.2526 -4.8554 10 8 4.1646 5.8593 -6.0251 11 6 4.7117 7.0888 -5.9455 12 1 4.7984 7.5804 -4.9877 13 6 5.1629 7.7224 -7.0932 14 7 5.0568 7.1238 -8.2599 15 14 5.9203 9.4264 -6.9830 16 1 5.9231 9.8763 -5.5679 17 1 7.3151 9.3819 -7.4906 18 1 5.1253 10.3754 -7.8031 19 6 3.9708 5.9429 -3.6560 20 6 3.6422 5.3286 -2.4666 21 6 2.9564 4.0401 0.0157 22 6 2.6284 3.4208 1.2026 23 6 2.1595 2.1121 1.1987 24 7 1.8205 1.4885 2.4036 25 6 2.5193 1.7610 3.5233 26 6 2.2197 1.0160 4.7986 27 8 3.3895 2.6057 3.5046 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 2.2576 1.4991 -2.1216 34 1 2.6976 2.3014 -3.6742 35 1 3.2761 3.4077 -5.7919 36 1 5.3729 7.5669 -9.0629 37 1 4.3303 6.9613 -3.6560 38 1 3.7436 5.8655 -1.5351 39 1 3.3153 5.0587 0.0187 40 1 2.7302 3.9547 2.1359 41 1 1.0824 0.8600 2.4335 42 1 1.4143 0.3029 4.6220 43 1 3.1119 0.4822 5.1258 44 1 1.9162 1.7237 5.5700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:07 Heat of formation + Delta-G solvation = -41.740679 kcal Electronic energy + Delta-G solvation = -25858.869358 eV Core-core repulsion = 22126.536443 eV Total energy + Delta-G solvation = -3732.332915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70341 -40.83936 -39.72856 -38.18948 -35.94977 -34.79573 -34.31783 -32.45760 -32.03640 -30.61562 -30.36273 -28.32051 -27.23656 -25.05137 -24.35556 -23.45316 -22.76523 -21.40956 -21.12916 -19.85935 -19.09482 -18.60933 -17.89163 -17.20673 -16.71469 -16.42042 -16.13715 -15.83048 -15.61328 -15.57080 -15.20995 -14.86333 -14.74506 -14.66004 -14.45062 -14.22905 -13.94618 -13.57441 -13.55020 -13.39192 -13.21386 -13.09755 -12.91256 -12.80751 -12.58289 -12.43808 -12.16550 -12.11582 -11.81509 -11.79581 -11.38287 -11.15003 -10.88789 -10.76694 -9.87085 -9.73345 -9.54792 -8.50649 -8.36358 -6.16806 -0.15339 0.46193 0.56097 0.95392 1.34399 1.42313 1.52579 1.62987 2.15443 2.16081 2.66442 2.96310 3.25570 3.45035 3.71319 3.80444 3.86146 3.90556 4.04547 4.16725 4.28887 4.32714 4.44804 4.48122 4.52728 4.55885 4.60475 4.65870 4.75306 4.79087 4.91613 4.99904 5.07262 5.10795 5.14479 5.15762 5.24853 5.29058 5.40312 5.44798 5.50549 5.52102 5.63247 5.65500 5.90898 5.99543 6.07251 6.15170 6.46196 6.94251 7.15591 7.72904 8.72502 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.002308 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.308408 B =12130.969121 C =13181.842447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.108 4.108 5 C -0.038 4.038 6 C -0.132 4.132 7 C -0.053 4.053 8 C -0.199 4.199 9 C 0.119 3.881 10 O -0.225 6.225 11 C -0.414 4.414 12 H 0.102 0.898 13 C -0.022 4.022 14 N -0.917 5.917 15 Si 1.019 2.981 16 H -0.253 1.253 17 H -0.268 1.268 18 H -0.267 1.267 19 C -0.241 4.241 20 C -0.061 4.061 21 C -0.122 4.122 22 C -0.126 4.126 23 C 0.124 3.876 24 N -0.656 5.656 25 C 0.500 3.500 26 C -0.160 4.160 27 O -0.580 6.580 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.274 0.726 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.426 0.574 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -16.383 24.468 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.127 4.127 5 C -0.038 4.038 6 C -0.133 4.133 7 C -0.071 4.071 8 C -0.218 4.218 9 C 0.068 3.932 10 O -0.131 6.131 11 C -0.490 4.490 12 H 0.119 0.881 13 C -0.220 4.220 14 N -0.555 5.555 15 Si 0.838 3.162 16 H -0.176 1.176 17 H -0.193 1.193 18 H -0.192 1.192 19 C -0.260 4.260 20 C -0.079 4.079 21 C -0.141 4.141 22 C -0.146 4.146 23 C 0.030 3.970 24 N -0.304 5.304 25 C 0.290 3.710 26 C -0.219 4.219 27 O -0.459 6.459 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.266 0.734 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.853 -15.880 24.091 30.490 hybrid contribution 0.334 1.042 -0.620 1.258 sum -9.519 -14.838 23.471 29.354 Atomic orbital electron populations 1.21777 0.93484 1.02952 1.02159 1.20568 0.96935 0.90244 1.04171 1.19845 1.01685 0.97403 0.90928 1.21130 0.99475 0.93663 0.98389 1.18746 0.99291 0.94401 0.91381 1.18612 1.07491 0.94511 0.92656 1.21074 0.96379 0.99793 0.89811 1.20418 1.09008 0.92722 0.99684 1.20022 0.93734 0.93076 0.86387 1.83926 1.70520 1.31558 1.27124 1.21874 1.39680 0.90898 0.96554 0.88073 1.26595 0.97203 1.04599 0.93555 1.70187 1.45825 1.40260 0.99197 0.84526 0.77793 0.74306 0.79570 1.17615 1.19274 1.19175 1.21186 1.10614 1.01712 0.92491 1.21127 0.95529 0.94304 0.96907 1.21182 1.01064 1.00408 0.91438 1.21133 1.01160 0.94070 0.98241 1.17663 1.01702 0.91528 0.86106 1.43614 1.35027 1.45331 1.06397 1.21980 0.79862 0.82601 0.86515 1.21902 1.05948 1.01844 0.92213 1.90735 1.34345 1.35108 1.85695 0.93193 0.90272 0.92320 0.89795 0.89914 0.84003 0.82753 0.85996 0.91713 0.86019 0.84536 0.85660 0.85571 0.73424 0.87014 0.87651 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.82 71.98 0.71 -0.63 16 2 C -0.08 -0.98 5.46 29.85 0.16 -0.82 16 3 C -0.10 -1.93 5.14 -19.78 -0.10 -2.03 16 4 C -0.11 -2.62 9.05 22.47 0.20 -2.42 16 5 C -0.04 -1.12 5.88 -20.03 -0.12 -1.23 16 6 C -0.13 -4.60 5.88 -20.02 -0.12 -4.71 16 7 C -0.05 -1.83 9.42 22.47 0.21 -1.62 16 8 C -0.20 -8.54 9.98 22.36 0.22 -8.32 16 9 C 0.12 6.01 6.65 22.64 0.15 6.16 16 10 O -0.23 -13.64 9.75 -22.03 -0.21 -13.85 16 11 C -0.41 -24.31 9.48 67.92 0.64 -23.67 16 12 H 0.10 5.49 5.19 -2.91 -0.02 5.48 16 13 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 14 N -0.92 -56.31 13.67 21.61 0.30 -56.01 16 15 Si 1.02 43.24 29.55 68.60 2.03 45.26 16 16 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 C -0.24 -10.90 9.15 22.36 0.20 -10.69 16 20 C -0.06 -2.29 9.42 22.47 0.21 -2.08 16 21 C -0.12 -3.57 9.42 22.47 0.21 -3.35 16 22 C -0.13 -3.45 8.68 22.36 0.19 -3.26 16 23 C 0.12 2.74 6.29 38.22 0.24 2.98 16 24 N -0.66 -9.55 4.76 -303.39 -1.45 -11.00 16 25 C 0.50 8.41 7.78 87.66 0.68 9.09 16 26 C -0.16 -0.89 10.39 71.24 0.74 -0.15 16 27 O -0.58 -16.12 14.50 -3.07 -0.04 -16.16 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.44 7.24 -2.39 -0.02 0.42 16 31 H 0.08 0.76 7.44 -2.39 -0.02 0.74 16 32 H 0.08 0.95 8.05 -2.38 -0.02 0.93 16 33 H 0.14 2.91 6.19 -2.91 -0.02 2.89 16 34 H 0.16 4.07 6.19 -2.91 -0.02 4.05 16 35 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 36 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.12 5.56 5.62 -2.91 -0.02 5.55 16 38 H 0.14 4.38 6.19 -2.91 -0.02 4.36 16 39 H 0.13 3.50 6.19 -2.91 -0.02 3.48 16 40 H 0.13 3.68 6.19 -2.91 -0.02 3.66 16 41 H 0.43 2.88 6.84 -92.71 -0.63 2.24 16 42 H 0.11 -0.15 7.92 -2.38 -0.02 -0.17 16 43 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -79.65 365.12 5.95 -73.70 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.42 Total: 25.59 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.92 Total: -47.53 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -1.15 Total: -67.01 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.26 Total: -30.01 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -79.65 5.95 -73.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.955 kcal (2) G-P(sol) polarization free energy of solvation -79.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds