Wall clock time and date at job start Tue Mar 31 2020 14:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47186 * 2 1 4 4 C 1.38234 * 119.90124 * 89.99733 * 3 2 1 5 5 C 1.38933 * 120.18043 * 180.02562 * 4 3 2 6 6 N 1.39937 * 120.01037 * 180.02562 * 5 4 3 7 7 C 1.34781 * 119.99728 * 35.13007 * 6 5 4 8 8 C 1.50704 * 119.99769 * 175.22095 * 7 6 5 9 9 O 1.21279 * 120.00035 * 355.50260 * 7 6 5 10 10 C 1.38680 * 119.98512 * 0.27205 * 5 4 3 11 11 C 1.39248 * 119.79784 * 359.45252 * 10 5 4 12 12 C 1.48328 * 120.09230 * 180.24902 * 11 10 5 13 13 C 1.39429 * 120.05747 * 180.02562 * 12 11 10 14 14 C 1.37840 * 119.95082 * 179.71999 * 13 12 11 15 15 C 1.38996 * 120.04858 * 0.55617 * 14 13 12 16 16 O 1.35701 * 119.94533 * 179.69502 * 15 14 13 17 17 C 1.34821 * 116.99544 * 185.37378 * 16 15 14 18 18 H 1.07995 * 120.00530 * 354.96882 * 17 16 15 19 19 C 1.38646 * 119.99265 * 174.96335 * 17 16 15 20 20 N 1.31561 * 120.00661 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99595 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46988 * 60.00388 * 21 19 17 23 23 H 1.48500 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47543 * 300.00369 * 21 19 17 25 25 C 1.39004 * 120.10588 * 359.72059 * 15 14 13 26 26 C 1.37833 * 120.05091 * 0.02562 * 25 15 14 27 27 C 1.38030 * 119.89938 * 270.02030 * 3 2 1 28 28 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47371 * 300.00527 * 1 2 3 30 30 H 1.09000 * 109.46769 * 60.00387 * 1 2 3 31 31 H 1.08995 * 109.47679 * 239.99744 * 2 1 3 32 32 H 1.09000 * 109.46769 * 119.99613 * 2 1 3 33 33 H 1.07994 * 119.91035 * 359.97438 * 4 3 2 34 34 H 0.97001 * 120.00269 * 215.12868 * 6 5 4 35 35 H 1.08991 * 109.47421 * 270.27645 * 8 7 6 36 36 H 1.09002 * 109.46940 * 30.27679 * 8 7 6 37 37 H 1.09000 * 109.46873 * 150.27636 * 8 7 6 38 38 H 1.07996 * 120.10191 * 179.70093 * 10 5 4 39 39 H 1.08002 * 120.02262 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.97172 * 180.27298 * 14 13 12 41 41 H 0.97001 * 120.00057 * 180.02562 * 20 19 17 42 42 H 1.07995 * 119.96982 * 179.97438 * 25 15 14 43 43 H 1.07994 * 120.02798 * 180.02562 * 26 25 15 44 44 H 1.08000 * 119.99292 * 359.95471 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0705 1.1983 5 6 2.7246 3.3805 1.2051 6 7 2.9564 4.0347 2.4203 7 6 3.4256 3.3442 3.4784 8 6 3.7772 4.0665 4.7535 9 8 3.5697 2.1424 3.4028 10 6 2.9518 4.0415 0.0073 11 6 2.7257 3.3844 -1.1994 12 6 2.9718 4.0834 -2.4843 13 6 2.7446 3.4249 -3.6921 14 6 2.9685 4.0784 -4.8849 15 6 3.4314 5.3891 -4.8843 16 8 3.6570 6.0284 -6.0598 17 6 4.2100 7.2561 -5.9924 18 1 4.3775 7.7210 -5.0322 19 6 4.5636 7.9218 -7.1561 20 7 4.3592 7.3557 -8.3259 21 14 5.3291 9.6232 -7.0628 22 1 6.5952 9.5547 -6.2898 23 1 5.6125 10.1144 -8.4353 24 1 4.3877 10.5534 -6.3893 25 6 3.6641 6.0457 -3.6814 26 6 3.4367 5.3980 -2.4862 27 6 2.2613 2.0696 -1.1966 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0805 1.5587 2.1318 34 1 2.7794 4.9850 2.5010 35 1 4.8214 4.3771 4.7191 36 1 3.1403 4.9445 4.8612 37 1 3.6242 3.4003 5.6025 38 1 3.3068 5.0615 0.0104 39 1 2.3896 2.4049 -3.6931 40 1 2.7885 3.5702 -5.8207 41 1 4.6070 7.8213 -9.1400 42 1 4.0241 7.0639 -3.6834 43 1 3.6172 5.9087 -1.5519 44 1 2.0811 1.5587 -2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:12 Heat of formation + Delta-G solvation = -24.571033 kcal Electronic energy + Delta-G solvation = -25807.235240 eV Core-core repulsion = 22075.646857 eV Total energy + Delta-G solvation = -3731.588383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63122 -39.32404 -38.52222 -36.54718 -35.34605 -33.63394 -32.39109 -31.33072 -30.52195 -29.87197 -28.55975 -27.55501 -25.47661 -24.10520 -23.14190 -22.12607 -21.38595 -20.57082 -19.76920 -18.12697 -17.60322 -17.13979 -16.73044 -16.15253 -15.72540 -15.10147 -14.90380 -14.57977 -14.29206 -14.11357 -13.93536 -13.75110 -13.61277 -13.43694 -13.25115 -13.00102 -12.86642 -12.68937 -12.41999 -12.21185 -11.93394 -11.78972 -11.75104 -11.43599 -11.29538 -11.06239 -11.01029 -10.73491 -10.63642 -10.45987 -10.23606 -9.92492 -9.41696 -9.06068 -8.57364 -8.30000 -8.12908 -6.98230 -6.55648 -4.12431 1.19809 1.38151 2.16393 2.30944 2.57664 2.90722 3.07312 3.08936 3.11477 3.88150 3.92857 4.43495 4.61707 4.74752 4.82239 4.91919 5.00568 5.00956 5.13208 5.14048 5.23998 5.32808 5.37222 5.43011 5.51328 5.57528 5.61228 5.63468 5.73034 5.84575 5.92700 6.05061 6.12148 6.18200 6.20729 6.37271 6.43149 6.59089 6.65102 6.73935 6.84942 6.97092 7.10382 7.22201 7.25406 7.31305 7.35883 7.71274 7.89132 7.89988 8.89289 9.57656 10.61563 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002565 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.637781 B =10914.295331 C =12544.731411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.061 4.061 4 C -0.138 4.138 5 C 0.145 3.855 6 N -0.673 5.673 7 C 0.508 3.492 8 C -0.171 4.171 9 O -0.528 6.528 10 C -0.159 4.159 11 C 0.022 3.978 12 C -0.161 4.161 13 C -0.055 4.055 14 C -0.193 4.193 15 C 0.160 3.840 16 O -0.170 6.170 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.858 5.858 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.236 4.236 26 C -0.052 4.052 27 C -0.139 4.139 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.410 0.590 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -6.231 20.905 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.061 4.061 4 C -0.158 4.158 5 C 0.052 3.948 6 N -0.318 5.318 7 C 0.296 3.704 8 C -0.231 4.231 9 O -0.404 6.404 10 C -0.179 4.179 11 C 0.021 3.979 12 C -0.162 4.162 13 C -0.073 4.073 14 C -0.213 4.213 15 C 0.105 3.895 16 O -0.072 6.072 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.491 5.491 21 Si 0.767 3.233 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.255 4.255 26 C -0.070 4.070 27 C -0.157 4.157 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.245 0.755 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.128 0.872 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.174 -7.064 20.400 21.988 hybrid contribution 0.405 1.553 0.089 1.608 sum -3.769 -5.511 20.489 21.550 Atomic orbital electron populations 1.21738 0.94843 1.01443 1.02237 1.20518 0.96057 0.92738 1.02757 1.19632 0.98111 0.95905 0.92500 1.20943 1.02160 0.94243 0.98431 1.17573 0.99377 0.93341 0.84533 1.43603 1.65042 1.13007 1.10156 1.20973 0.76159 0.87999 0.85243 1.21888 1.04149 1.01959 0.95062 1.90731 1.51948 1.14656 1.83030 1.20869 1.05736 1.00865 0.90470 1.18541 0.94836 0.92683 0.91830 1.18184 1.11768 0.95099 0.91101 1.20713 0.97214 0.98310 0.91037 1.20156 1.09603 0.93395 0.98109 1.19494 0.92179 0.91410 0.86425 1.83958 1.68121 1.30040 1.25060 1.21338 1.40204 0.90499 0.94840 0.88880 1.25334 0.96901 1.00100 0.94139 1.70027 1.43449 1.38063 0.97582 0.85754 0.79457 0.80059 0.78044 1.19381 1.20167 1.19394 1.21090 1.10729 1.01846 0.91859 1.20795 0.95993 0.93333 0.96886 1.21065 1.02679 0.94502 0.97503 0.92596 0.92746 0.92374 0.90982 0.91143 0.85053 0.75451 0.88490 0.89972 0.88638 0.85791 0.86582 0.86208 0.91749 0.85313 0.87228 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.08 -0.90 6.06 -27.88 -0.17 -1.06 16 3 C -0.06 -0.81 5.13 -104.70 -0.54 -1.35 16 4 C -0.14 -1.91 8.34 -39.33 -0.33 -2.24 16 5 C 0.14 1.91 6.29 -83.74 -0.53 1.38 16 6 N -0.67 -6.57 5.33 -9.89 -0.05 -6.63 16 7 C 0.51 5.19 7.78 -10.98 -0.09 5.11 16 8 C -0.17 -0.91 10.31 36.01 0.37 -0.54 16 9 O -0.53 -7.67 14.54 5.56 0.08 -7.59 16 10 C -0.16 -2.21 9.34 -39.04 -0.36 -2.58 16 11 C 0.02 0.34 5.87 -104.92 -0.62 -0.28 16 12 C -0.16 -2.82 5.88 -104.85 -0.62 -3.44 16 13 C -0.05 -0.97 9.42 -39.28 -0.37 -1.34 16 14 C -0.19 -4.00 9.98 -39.45 -0.39 -4.39 16 15 C 0.16 3.77 6.65 -39.02 -0.26 3.51 16 16 O -0.17 -4.72 9.75 0.23 0.00 -4.71 16 17 C -0.39 -10.67 9.48 30.88 0.29 -10.37 16 18 H 0.09 2.32 5.19 -52.49 -0.27 2.04 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.54 13.67 55.48 0.76 -23.78 16 21 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.24 -4.97 9.15 -39.45 -0.36 -5.33 16 26 C -0.05 -0.94 9.42 -39.28 -0.37 -1.31 16 27 C -0.14 -1.99 9.07 -39.21 -0.36 -2.34 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.07 0.73 8.08 -51.93 -0.42 0.32 16 33 H 0.13 1.88 6.22 -52.49 -0.33 1.56 16 34 H 0.41 2.59 8.82 -40.82 -0.36 2.23 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.12 1.53 6.20 -52.49 -0.33 1.20 16 39 H 0.12 1.73 6.19 -52.49 -0.33 1.41 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 43 H 0.11 1.65 6.20 -52.49 -0.33 1.33 16 44 H 0.12 1.60 6.19 -52.49 -0.33 1.28 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -32.86 369.74 -8.57 -41.43 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.49 Total: 7.45 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -4.42 Total: -26.61 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.71 Total: -30.40 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.86 -8.57 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.860 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds