Wall clock time and date at job start Tue Mar 31 2020 14:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47186 * 2 1 4 4 C 1.38234 * 119.90124 * 89.99733 * 3 2 1 5 5 C 1.38933 * 120.18043 * 180.02562 * 4 3 2 6 6 N 1.39937 * 120.01037 * 180.02562 * 5 4 3 7 7 C 1.34781 * 119.99728 * 35.13007 * 6 5 4 8 8 C 1.50704 * 119.99769 * 175.22095 * 7 6 5 9 9 O 1.21279 * 120.00035 * 355.50260 * 7 6 5 10 10 C 1.38680 * 119.98512 * 0.27205 * 5 4 3 11 11 C 1.39248 * 119.79784 * 359.45252 * 10 5 4 12 12 C 1.48328 * 120.09230 * 180.24902 * 11 10 5 13 13 C 1.39429 * 120.05747 * 180.02562 * 12 11 10 14 14 C 1.37840 * 119.95082 * 179.71999 * 13 12 11 15 15 C 1.38996 * 120.04858 * 0.55617 * 14 13 12 16 16 O 1.35701 * 119.94533 * 179.69502 * 15 14 13 17 17 C 1.34821 * 116.99544 * 185.37378 * 16 15 14 18 18 H 1.07995 * 120.00530 * 354.96882 * 17 16 15 19 19 C 1.38646 * 119.99265 * 174.96335 * 17 16 15 20 20 N 1.31561 * 120.00661 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99595 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46988 * 60.00388 * 21 19 17 23 23 H 1.48500 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47543 * 300.00369 * 21 19 17 25 25 C 1.39004 * 120.10588 * 359.72059 * 15 14 13 26 26 C 1.37833 * 120.05091 * 0.02562 * 25 15 14 27 27 C 1.38030 * 119.89938 * 270.02030 * 3 2 1 28 28 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47371 * 300.00527 * 1 2 3 30 30 H 1.09000 * 109.46769 * 60.00387 * 1 2 3 31 31 H 1.08995 * 109.47679 * 239.99744 * 2 1 3 32 32 H 1.09000 * 109.46769 * 119.99613 * 2 1 3 33 33 H 1.07994 * 119.91035 * 359.97438 * 4 3 2 34 34 H 0.97001 * 120.00269 * 215.12868 * 6 5 4 35 35 H 1.08991 * 109.47421 * 270.27645 * 8 7 6 36 36 H 1.09002 * 109.46940 * 30.27679 * 8 7 6 37 37 H 1.09000 * 109.46873 * 150.27636 * 8 7 6 38 38 H 1.07996 * 120.10191 * 179.70093 * 10 5 4 39 39 H 1.08002 * 120.02262 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.97172 * 180.27298 * 14 13 12 41 41 H 0.97001 * 120.00057 * 180.02562 * 20 19 17 42 42 H 1.07995 * 119.96982 * 179.97438 * 25 15 14 43 43 H 1.07994 * 120.02798 * 180.02562 * 26 25 15 44 44 H 1.08000 * 119.99292 * 359.95471 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0705 1.1983 5 6 2.7246 3.3805 1.2051 6 7 2.9564 4.0347 2.4203 7 6 3.4256 3.3442 3.4784 8 6 3.7772 4.0665 4.7535 9 8 3.5697 2.1424 3.4028 10 6 2.9518 4.0415 0.0073 11 6 2.7257 3.3844 -1.1994 12 6 2.9718 4.0834 -2.4843 13 6 2.7446 3.4249 -3.6921 14 6 2.9685 4.0784 -4.8849 15 6 3.4314 5.3891 -4.8843 16 8 3.6570 6.0284 -6.0598 17 6 4.2100 7.2561 -5.9924 18 1 4.3775 7.7210 -5.0322 19 6 4.5636 7.9218 -7.1561 20 7 4.3592 7.3557 -8.3259 21 14 5.3291 9.6232 -7.0628 22 1 6.5952 9.5547 -6.2898 23 1 5.6125 10.1144 -8.4353 24 1 4.3877 10.5534 -6.3893 25 6 3.6641 6.0457 -3.6814 26 6 3.4367 5.3980 -2.4862 27 6 2.2613 2.0696 -1.1966 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0805 1.5587 2.1318 34 1 2.7794 4.9850 2.5010 35 1 4.8214 4.3771 4.7191 36 1 3.1403 4.9445 4.8612 37 1 3.6242 3.4003 5.6025 38 1 3.3068 5.0615 0.0104 39 1 2.3896 2.4049 -3.6931 40 1 2.7885 3.5702 -5.8207 41 1 4.6070 7.8213 -9.1400 42 1 4.0241 7.0639 -3.6834 43 1 3.6172 5.9087 -1.5519 44 1 2.0811 1.5587 -2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:11 Heat of formation + Delta-G solvation = -43.592915 kcal Electronic energy + Delta-G solvation = -25808.060091 eV Core-core repulsion = 22075.646857 eV Total energy + Delta-G solvation = -3732.413234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60425 -40.82001 -39.76683 -38.11575 -36.26933 -34.80756 -34.17001 -32.36818 -32.02925 -30.79111 -29.55164 -28.86547 -27.34572 -25.09929 -24.38918 -23.47331 -22.68795 -21.52765 -20.99833 -19.87741 -19.05041 -18.12501 -17.90602 -17.29685 -16.70852 -16.43692 -16.22632 -16.10695 -15.57355 -15.54298 -15.18719 -15.00607 -14.82954 -14.57353 -14.41564 -14.12890 -14.02955 -13.55246 -13.44064 -13.36771 -13.15094 -13.02054 -12.94808 -12.79040 -12.57652 -12.50378 -12.22087 -12.14607 -11.85010 -11.77475 -11.31156 -11.13414 -10.90931 -10.77676 -9.93207 -9.85558 -9.16889 -8.53093 -8.48280 -6.15786 -0.08945 0.33639 0.57494 1.05160 1.35833 1.46741 1.52117 1.60594 2.13306 2.17220 2.67416 2.97482 3.25912 3.45919 3.71262 3.74248 3.85449 4.03054 4.09685 4.23045 4.27887 4.34301 4.44891 4.49797 4.51659 4.54435 4.59745 4.65462 4.69657 4.76144 4.92026 5.04438 5.06108 5.07250 5.10219 5.16310 5.25042 5.33440 5.36026 5.41899 5.44245 5.53734 5.66043 5.73364 5.89263 6.00278 6.08192 6.15623 6.46126 6.95505 7.14022 7.74265 8.73755 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002565 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.637781 B =10914.295331 C =12544.731411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.064 4.064 4 C -0.142 4.142 5 C 0.142 3.858 6 N -0.663 5.663 7 C 0.502 3.498 8 C -0.161 4.161 9 O -0.577 6.577 10 C -0.155 4.155 11 C -0.004 4.004 12 C -0.136 4.136 13 C -0.053 4.053 14 C -0.202 4.202 15 C 0.121 3.879 16 O -0.226 6.226 17 C -0.416 4.416 18 H 0.105 0.895 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.019 2.981 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.240 4.240 26 C -0.053 4.053 27 C -0.141 4.141 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.428 0.572 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.274 0.726 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -6.144 24.764 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.162 4.162 5 C 0.048 3.952 6 N -0.310 5.310 7 C 0.293 3.707 8 C -0.220 4.220 9 O -0.456 6.456 10 C -0.175 4.175 11 C -0.004 4.004 12 C -0.136 4.136 13 C -0.070 4.070 14 C -0.222 4.222 15 C 0.069 3.931 16 O -0.132 6.132 17 C -0.491 4.491 18 H 0.122 0.878 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.838 3.162 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.259 4.259 26 C -0.071 4.071 27 C -0.160 4.160 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.267 0.733 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.374 -6.974 24.337 25.691 hybrid contribution 0.324 1.177 -0.646 1.381 sum -4.050 -5.797 23.691 24.724 Atomic orbital electron populations 1.21712 0.93797 1.02534 1.01870 1.20580 0.96897 0.91246 1.03371 1.19899 0.97493 0.97064 0.91973 1.21116 1.01860 0.94783 0.98475 1.17676 0.98576 0.93259 0.85731 1.43629 1.64450 1.13922 1.09006 1.21919 0.74796 0.87634 0.86325 1.21922 1.05557 1.02540 0.91997 1.90712 1.53964 1.16984 1.83903 1.21022 1.04870 1.01569 0.90069 1.18507 0.97214 0.93477 0.91251 1.18553 1.08229 0.94744 0.92106 1.21063 0.96304 0.99652 0.90027 1.20390 1.09556 0.92766 0.99444 1.20032 0.93785 0.92698 0.86541 1.83934 1.71127 1.30951 1.27162 1.21834 1.40652 0.90945 0.95705 0.87756 1.26615 0.97289 1.04599 0.93447 1.70177 1.46520 1.40431 0.98468 0.84646 0.78858 0.74404 0.78329 1.18114 1.19742 1.17973 1.21206 1.10664 1.01901 0.92169 1.21132 0.95171 0.93630 0.97122 1.21227 1.02186 0.94170 0.98380 0.90852 0.93144 0.92667 0.89970 0.90965 0.85621 0.73295 0.87029 0.86886 0.88367 0.84042 0.83296 0.86343 0.91741 0.85631 0.83666 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 71.98 0.71 -1.64 16 2 C -0.08 -1.60 6.06 29.85 0.18 -1.42 16 3 C -0.06 -1.55 5.13 -19.92 -0.10 -1.65 16 4 C -0.14 -3.66 8.34 22.44 0.19 -3.47 16 5 C 0.14 3.34 6.29 38.12 0.24 3.58 16 6 N -0.66 -10.85 5.33 -303.59 -1.62 -12.47 16 7 C 0.50 8.93 7.78 87.66 0.68 9.62 16 8 C -0.16 -1.12 10.31 71.24 0.73 -0.38 16 9 O -0.58 -15.90 14.54 -3.03 -0.04 -15.95 16 10 C -0.16 -3.81 9.34 22.62 0.21 -3.60 16 11 C 0.00 -0.11 5.87 -20.06 -0.12 -0.23 16 12 C -0.14 -4.47 5.88 -20.01 -0.12 -4.58 16 13 C -0.05 -1.81 9.42 22.46 0.21 -1.60 16 14 C -0.20 -8.56 9.98 22.36 0.22 -8.33 16 15 C 0.12 5.92 6.65 22.64 0.15 6.07 16 16 O -0.23 -13.39 9.75 -22.10 -0.22 -13.60 16 17 C -0.42 -23.72 9.48 67.92 0.64 -23.07 16 18 H 0.11 5.39 5.19 -2.91 -0.02 5.38 16 19 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 20 N -0.92 -55.68 13.67 21.61 0.30 -55.39 16 21 Si 1.02 41.83 29.55 68.60 2.03 43.86 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 C -0.24 -10.20 9.15 22.36 0.20 -9.99 16 26 C -0.05 -1.81 9.42 22.46 0.21 -1.59 16 27 C -0.14 -3.66 9.07 22.51 0.20 -3.45 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 32 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 33 H 0.13 3.43 6.22 -2.91 -0.02 3.41 16 34 H 0.43 3.72 8.82 -92.71 -0.82 2.90 16 35 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.14 2.89 6.20 -2.91 -0.02 2.87 16 39 H 0.15 4.06 6.19 -2.91 -0.02 4.05 16 40 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.13 5.31 5.62 -2.91 -0.02 5.30 16 43 H 0.15 3.87 6.20 -2.91 -0.02 3.85 16 44 H 0.13 3.09 6.19 -2.91 -0.02 3.07 16 Total: -1.00 -77.15 369.74 5.60 -71.55 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.23 Total: 28.50 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.93 Total: -46.50 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.32 Total: -67.86 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.26 Total: -29.55 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -77.15 5.60 -71.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.956 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds