Wall clock time and date at job start Tue Mar 31 2020 13:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34738 * 116.99616 * 2 1 4 4 O 1.21487 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.47637 * 119.99916 * 180.02562 * 3 2 1 6 6 C 1.39800 * 119.99871 * 270.00188 * 5 3 2 7 7 C 1.50703 * 120.00034 * 0.02562 * 6 5 3 8 8 C 1.37107 * 119.99982 * 180.02562 * 6 5 3 9 9 C 1.39806 * 119.99811 * 359.97398 * 8 6 5 10 10 C 1.47749 * 119.99759 * 180.02562 * 9 8 6 11 11 N 1.32606 * 119.99584 * 316.15622 * 10 9 8 12 12 C 1.31688 * 121.72932 * 180.02562 * 11 10 9 13 13 C 1.50708 * 119.24621 * 179.97438 * 12 11 10 14 14 C 1.38929 * 121.51118 * 0.02562 * 12 11 10 15 15 C 1.36847 * 119.80473 * 0.02562 * 14 12 11 16 16 C 1.41170 * 118.38972 * 0.27213 * 15 14 12 17 17 C 1.40825 * 120.72396 * 179.70157 * 16 15 14 18 18 H 1.08000 * 120.00170 * 150.50516 * 17 16 15 19 19 C 1.40158 * 120.00224 * 330.50310 * 17 16 15 20 20 N 1.30720 * 120.00190 * 163.12578 * 19 17 16 21 21 Si 1.86797 * 119.99844 * 343.13197 * 19 17 16 22 22 H 1.48504 * 109.47371 * 90.30966 * 21 19 17 23 23 H 1.48502 * 109.47371 * 210.31198 * 21 19 17 24 24 H 1.48507 * 109.47059 * 330.30783 * 21 19 17 25 25 C 1.39800 * 120.00239 * 0.27514 * 9 8 6 26 26 C 1.37115 * 119.99448 * 359.47283 * 25 9 8 27 27 C 1.50703 * 119.99698 * 180.24651 * 26 25 9 28 28 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 299.99267 * 1 2 3 30 30 H 1.09000 * 109.47720 * 59.99973 * 1 2 3 31 31 H 1.09008 * 109.47092 * 270.02094 * 7 6 5 32 32 H 1.09001 * 109.47167 * 30.01926 * 7 6 5 33 33 H 1.09003 * 109.47388 * 150.02213 * 7 6 5 34 34 H 1.08003 * 120.00265 * 179.97438 * 8 6 5 35 35 H 1.09003 * 109.46717 * 270.01875 * 13 12 11 36 36 H 1.08995 * 109.46897 * 30.01506 * 13 12 11 37 37 H 1.08997 * 109.47260 * 150.02257 * 13 12 11 38 38 H 1.08006 * 120.09392 * 179.97438 * 14 12 11 39 39 H 1.07995 * 120.80479 * 180.02562 * 15 14 12 40 40 H 0.97002 * 119.99796 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.00625 * 179.72069 * 25 9 8 42 42 H 1.08997 * 109.47204 * 270.27926 * 27 26 25 43 43 H 1.08997 * 109.47482 * 30.28139 * 27 26 25 44 44 H 1.09005 * 109.46982 * 150.27906 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5380 1.2779 -0.0006 6 6 4.2365 1.3142 1.2099 7 6 3.4845 1.2739 2.5153 8 6 5.6057 1.3866 1.2094 9 6 6.3032 1.4235 -0.0017 10 6 7.7787 1.5009 -0.0022 11 7 8.3993 2.3299 0.8261 12 6 9.7124 2.4267 0.8540 13 6 10.3594 3.3880 1.8176 14 6 10.5148 1.6639 0.0148 15 6 9.9393 0.7886 -0.8658 16 6 8.5310 0.6943 -0.8949 17 6 7.8871 -0.1856 -1.7861 18 1 6.9324 -0.6171 -1.5236 19 6 8.4851 -0.5016 -3.0137 20 7 8.0787 -1.5441 -3.6896 21 14 9.8631 0.5668 -3.6838 22 1 11.1694 0.0484 -3.2041 23 1 9.8342 0.5385 -5.1682 24 1 9.6810 1.9631 -3.2117 25 6 5.6045 1.3924 -1.2121 26 6 4.2355 1.3148 -1.2115 27 6 3.4825 1.2757 -2.5164 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.2487 2.2904 2.8303 32 1 2.5607 0.7103 2.3851 33 1 4.1004 0.7918 3.2746 34 1 6.1453 1.4151 2.1445 35 1 10.4756 4.3600 1.3381 36 1 9.7322 3.4923 2.7029 37 1 11.3384 3.0071 2.1085 38 1 11.5895 1.7620 0.0566 39 1 10.5476 0.1874 -1.5252 40 1 8.4928 -1.7629 -4.5391 41 1 6.1430 1.4255 -2.1476 42 1 3.2472 2.2925 -2.8307 43 1 4.0973 0.7936 -3.2764 44 1 2.5583 0.7127 -2.3858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244004438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:09 Heat of formation + Delta-G solvation = -50.807938 kcal Electronic energy + Delta-G solvation = -27293.048846 eV Core-core repulsion = 23560.322745 eV Total energy + Delta-G solvation = -3732.726101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53269 -39.28164 -38.16608 -36.21946 -34.43946 -33.32735 -32.97878 -31.77470 -30.19336 -28.29004 -28.17510 -26.97794 -26.22545 -24.89288 -23.20434 -21.74511 -21.10026 -20.23242 -19.69076 -17.73723 -17.56234 -16.83677 -16.49106 -15.94118 -15.56541 -14.98170 -14.52783 -14.20977 -13.81828 -13.73470 -13.53037 -13.41172 -13.12213 -12.98690 -12.94116 -12.72378 -12.56482 -12.34018 -12.19243 -12.10872 -11.93713 -11.68632 -11.66369 -11.42109 -11.14737 -11.10371 -10.88160 -10.76481 -10.56868 -10.45361 -10.29751 -9.98321 -9.62420 -8.79177 -8.39050 -8.23246 -8.09236 -7.54497 -7.23735 -4.71383 1.33061 1.91659 2.26671 2.28337 2.53634 2.90154 2.93111 3.02668 3.11118 3.72581 4.12934 4.33183 4.92942 5.04117 5.05720 5.09135 5.11655 5.12505 5.26583 5.45062 5.54044 5.61286 5.74563 5.75651 5.84938 5.87879 5.90975 5.99044 6.01647 6.04961 6.17583 6.23391 6.25196 6.31249 6.32818 6.47383 6.51024 6.61640 6.74437 6.80785 6.89564 7.06892 7.13577 7.31026 7.36972 7.53617 7.66083 7.82779 8.03809 8.26360 8.44024 9.27121 9.74645 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.004429 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.863467 B = 6319.985471 C = 7946.578447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.528 3.472 4 O -0.505 6.505 5 C -0.136 4.136 6 C -0.050 4.050 7 C -0.115 4.115 8 C -0.113 4.113 9 C 0.052 3.948 10 C 0.025 3.975 11 N -0.434 5.434 12 C -0.016 4.016 13 C -0.074 4.074 14 C -0.112 4.112 15 C -0.207 4.207 16 C 0.062 3.938 17 C -0.419 4.419 18 H 0.105 0.895 19 C 0.083 3.917 20 N -0.782 5.782 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.246 1.246 25 C -0.096 4.096 26 C -0.047 4.047 27 C -0.117 4.117 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.291 0.709 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 1.886 3.654 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.372 3.628 4 O -0.393 6.393 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.172 4.172 8 C -0.132 4.132 9 C 0.051 3.949 10 C -0.115 4.115 11 N -0.142 5.142 12 C -0.156 4.156 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.232 4.232 16 C 0.056 3.944 17 C -0.446 4.446 18 H 0.123 0.877 19 C -0.139 4.139 20 N -0.404 5.404 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.169 1.169 25 C -0.114 4.114 26 C -0.047 4.047 27 C -0.174 4.174 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.160 0.840 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.123 2.483 3.991 8.534 hybrid contribution 1.039 -0.317 -1.053 1.512 sum -6.085 2.166 2.939 7.096 Atomic orbital electron populations 1.23266 0.76992 1.03568 1.02372 1.86755 1.22808 1.33277 1.84011 1.21473 0.89344 0.81238 0.70764 1.90818 1.66838 1.36205 1.45440 1.18638 0.87749 1.12792 0.94566 1.19414 0.93731 0.98874 0.93021 1.20825 0.99498 1.02313 0.94534 1.20865 0.92018 1.02035 0.98263 1.18533 0.91203 0.92895 0.92221 1.19333 0.90991 0.99796 1.01337 1.66855 1.10606 1.17445 1.19282 1.20268 0.89015 1.03553 1.02736 1.20292 0.98667 0.96911 0.97343 1.21210 0.98993 0.96552 0.96403 1.21230 0.94889 1.03795 1.03305 1.18399 0.91582 0.91352 0.93031 1.19597 1.06706 1.19054 0.99237 0.87693 1.26265 0.96778 0.93991 0.96910 1.69621 1.37100 1.20442 1.13264 0.86373 0.80410 0.82734 0.76946 1.19141 1.21258 1.16875 1.21096 0.91858 0.99346 0.99128 1.19467 0.93773 0.98438 0.93034 1.20847 0.99560 1.02222 0.94755 0.88151 0.92050 0.91982 0.90968 0.92334 0.90798 0.85492 0.92976 0.92302 0.92722 0.87703 0.86853 0.89813 0.83967 0.91048 0.90210 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 101.05 1.07 1.40 16 2 O -0.35 -5.26 10.58 -40.60 -0.43 -5.69 16 3 C 0.53 8.96 4.28 34.57 0.15 9.11 16 4 O -0.51 -9.30 16.90 -19.26 -0.33 -9.62 16 5 C -0.14 -2.47 5.76 -104.89 -0.60 -3.08 16 6 C -0.05 -0.88 5.89 -104.45 -0.62 -1.50 16 7 C -0.12 -1.62 9.61 36.01 0.35 -1.27 16 8 C -0.11 -2.17 9.26 -39.41 -0.36 -2.53 16 9 C 0.05 1.12 5.26 -104.84 -0.55 0.57 16 10 C 0.03 0.59 6.42 -82.25 -0.53 0.06 16 11 N -0.43 -9.81 10.05 -5.45 -0.05 -9.87 16 12 C -0.02 -0.32 6.79 -82.39 -0.56 -0.88 16 13 C -0.07 -1.21 10.15 36.01 0.37 -0.85 16 14 C -0.11 -2.30 9.65 -39.83 -0.38 -2.69 16 15 C -0.21 -4.67 7.31 -38.97 -0.28 -4.96 16 16 C 0.06 1.47 5.12 -106.41 -0.54 0.92 16 17 C -0.42 -10.16 7.21 -37.88 -0.27 -10.43 16 18 H 0.11 2.69 6.70 -52.49 -0.35 2.34 16 19 C 0.08 1.95 5.44 -17.30 -0.09 1.86 16 20 N -0.78 -18.68 13.92 55.56 0.77 -17.91 16 21 Si 0.91 18.90 24.53 -169.99 -4.17 14.73 16 22 H -0.27 -5.34 6.46 56.52 0.37 -4.98 16 23 H -0.29 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.25 -5.33 7.00 56.52 0.40 -4.94 16 25 C -0.10 -1.94 7.46 -39.41 -0.29 -2.23 16 26 C -0.05 -0.86 5.89 -104.45 -0.62 -1.48 16 27 C -0.12 -1.84 9.61 36.01 0.35 -1.49 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 32 H 0.06 0.79 7.07 -51.93 -0.37 0.42 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.11 2.49 4.54 -52.49 -0.24 2.25 16 40 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 41 H 0.14 2.97 6.74 -52.49 -0.35 2.62 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 44 H 0.06 0.86 7.07 -51.93 -0.37 0.49 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -27.78 365.97 -8.05 -35.83 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.92 Total: 6.50 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -3.44 Total: -19.48 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 0.72 Total: -27.78 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.75 Total: -15.31 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.17 Total: 14.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.78 -8.05 -35.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244004438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.976 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds