Wall clock time and date at job start Tue Mar 31 2020 13:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34738 * 116.99616 * 2 1 4 4 O 1.21487 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.47637 * 119.99916 * 180.02562 * 3 2 1 6 6 C 1.39800 * 119.99871 * 270.00188 * 5 3 2 7 7 C 1.50703 * 120.00034 * 0.02562 * 6 5 3 8 8 C 1.37107 * 119.99982 * 180.02562 * 6 5 3 9 9 C 1.39806 * 119.99811 * 359.97398 * 8 6 5 10 10 C 1.47749 * 119.99759 * 180.02562 * 9 8 6 11 11 N 1.32606 * 119.99584 * 316.15622 * 10 9 8 12 12 C 1.31688 * 121.72932 * 180.02562 * 11 10 9 13 13 C 1.50708 * 119.24621 * 179.97438 * 12 11 10 14 14 C 1.38929 * 121.51118 * 0.02562 * 12 11 10 15 15 C 1.36847 * 119.80473 * 0.02562 * 14 12 11 16 16 C 1.41170 * 118.38972 * 0.27213 * 15 14 12 17 17 C 1.40825 * 120.72396 * 179.70157 * 16 15 14 18 18 H 1.08000 * 120.00170 * 150.50516 * 17 16 15 19 19 C 1.40158 * 120.00224 * 330.50310 * 17 16 15 20 20 N 1.30720 * 120.00190 * 163.12578 * 19 17 16 21 21 Si 1.86797 * 119.99844 * 343.13197 * 19 17 16 22 22 H 1.48504 * 109.47371 * 90.30966 * 21 19 17 23 23 H 1.48502 * 109.47371 * 210.31198 * 21 19 17 24 24 H 1.48507 * 109.47059 * 330.30783 * 21 19 17 25 25 C 1.39800 * 120.00239 * 0.27514 * 9 8 6 26 26 C 1.37115 * 119.99448 * 359.47283 * 25 9 8 27 27 C 1.50703 * 119.99698 * 180.24651 * 26 25 9 28 28 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 299.99267 * 1 2 3 30 30 H 1.09000 * 109.47720 * 59.99973 * 1 2 3 31 31 H 1.09008 * 109.47092 * 270.02094 * 7 6 5 32 32 H 1.09001 * 109.47167 * 30.01926 * 7 6 5 33 33 H 1.09003 * 109.47388 * 150.02213 * 7 6 5 34 34 H 1.08003 * 120.00265 * 179.97438 * 8 6 5 35 35 H 1.09003 * 109.46717 * 270.01875 * 13 12 11 36 36 H 1.08995 * 109.46897 * 30.01506 * 13 12 11 37 37 H 1.08997 * 109.47260 * 150.02257 * 13 12 11 38 38 H 1.08006 * 120.09392 * 179.97438 * 14 12 11 39 39 H 1.07995 * 120.80479 * 180.02562 * 15 14 12 40 40 H 0.97002 * 119.99796 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.00625 * 179.72069 * 25 9 8 42 42 H 1.08997 * 109.47204 * 270.27926 * 27 26 25 43 43 H 1.08997 * 109.47482 * 30.28139 * 27 26 25 44 44 H 1.09005 * 109.46982 * 150.27906 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5380 1.2779 -0.0006 6 6 4.2365 1.3142 1.2099 7 6 3.4845 1.2739 2.5153 8 6 5.6057 1.3866 1.2094 9 6 6.3032 1.4235 -0.0017 10 6 7.7787 1.5009 -0.0022 11 7 8.3993 2.3299 0.8261 12 6 9.7124 2.4267 0.8540 13 6 10.3594 3.3880 1.8176 14 6 10.5148 1.6639 0.0148 15 6 9.9393 0.7886 -0.8658 16 6 8.5310 0.6943 -0.8949 17 6 7.8871 -0.1856 -1.7861 18 1 6.9324 -0.6171 -1.5236 19 6 8.4851 -0.5016 -3.0137 20 7 8.0787 -1.5441 -3.6896 21 14 9.8631 0.5668 -3.6838 22 1 11.1694 0.0484 -3.2041 23 1 9.8342 0.5385 -5.1682 24 1 9.6810 1.9631 -3.2117 25 6 5.6045 1.3924 -1.2121 26 6 4.2355 1.3148 -1.2115 27 6 3.4825 1.2757 -2.5164 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.2487 2.2904 2.8303 32 1 2.5607 0.7103 2.3851 33 1 4.1004 0.7918 3.2746 34 1 6.1453 1.4151 2.1445 35 1 10.4756 4.3600 1.3381 36 1 9.7322 3.4923 2.7029 37 1 11.3384 3.0071 2.1085 38 1 11.5895 1.7620 0.0566 39 1 10.5476 0.1874 -1.5252 40 1 8.4928 -1.7629 -4.5391 41 1 6.1430 1.4255 -2.1476 42 1 3.2472 2.2925 -2.8307 43 1 4.0973 0.7936 -3.2764 44 1 2.5583 0.7127 -2.3858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244004438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:08 Heat of formation + Delta-G solvation = -64.092534 kcal Electronic energy + Delta-G solvation = -27293.624909 eV Core-core repulsion = 23560.322745 eV Total energy + Delta-G solvation = -3733.302164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86473 -40.86650 -39.65403 -37.47828 -36.15206 -34.70780 -34.53199 -33.47884 -31.70922 -29.76918 -29.38888 -28.11472 -27.62323 -26.44998 -24.75819 -23.31443 -22.61765 -21.66556 -21.17310 -19.44261 -18.95089 -18.10915 -17.80045 -17.60949 -17.13566 -16.43983 -16.01765 -15.57935 -15.31641 -15.28570 -14.99184 -14.85811 -14.54475 -14.18465 -14.17432 -14.10871 -13.99044 -13.79128 -13.68685 -13.42744 -13.12436 -13.05160 -12.98887 -12.86100 -12.64891 -12.61965 -12.38829 -12.05843 -12.02073 -11.84630 -11.84002 -11.55747 -11.34246 -10.43777 -10.06781 -9.87435 -9.57312 -9.18576 -8.98922 -6.51318 -0.20394 0.43512 0.62302 0.83253 0.93720 1.21814 1.35095 1.43267 1.72583 2.03593 2.52989 2.68071 3.42194 3.57137 3.66652 3.81025 3.81442 4.16224 4.18224 4.27930 4.30657 4.34652 4.36241 4.45272 4.49349 4.54273 4.62652 4.67182 4.68218 4.72661 4.75197 4.85834 4.88395 4.94714 4.98355 5.03683 5.14149 5.20970 5.22815 5.29445 5.40698 5.49905 5.52289 5.64090 5.80228 5.94320 5.97394 6.22168 6.53081 6.56328 6.64109 7.56378 8.05071 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.004429 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.863467 B = 6319.985471 C = 7946.578447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.359 6.359 3 C 0.537 3.463 4 O -0.522 6.522 5 C -0.146 4.146 6 C -0.048 4.048 7 C -0.112 4.112 8 C -0.118 4.118 9 C 0.026 3.974 10 C 0.013 3.987 11 N -0.453 5.453 12 C -0.014 4.014 13 C -0.072 4.072 14 C -0.116 4.116 15 C -0.219 4.219 16 C 0.043 3.957 17 C -0.440 4.440 18 H 0.075 0.925 19 C 0.057 3.943 20 N -0.818 5.818 21 Si 0.955 3.045 22 H -0.251 1.251 23 H -0.273 1.273 24 H -0.263 1.263 25 C -0.108 4.108 26 C -0.052 4.052 27 C -0.114 4.114 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.299 0.701 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 2.728 4.894 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.275 6.275 3 C 0.382 3.618 4 O -0.411 6.411 5 C -0.147 4.147 6 C -0.048 4.048 7 C -0.169 4.169 8 C -0.137 4.137 9 C 0.025 3.975 10 C -0.126 4.126 11 N -0.161 5.161 12 C -0.155 4.155 13 C -0.129 4.129 14 C -0.135 4.135 15 C -0.245 4.245 16 C 0.038 3.962 17 C -0.468 4.468 18 H 0.093 0.907 19 C -0.162 4.162 20 N -0.442 5.442 21 Si 0.779 3.221 22 H -0.176 1.176 23 H -0.199 1.199 24 H -0.187 1.187 25 C -0.127 4.127 26 C -0.052 4.052 27 C -0.170 4.170 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.972 3.299 5.231 9.320 hybrid contribution 0.910 -0.511 -1.273 1.646 sum -6.062 2.788 3.958 7.758 Atomic orbital electron populations 1.23679 0.74245 1.06036 1.03042 1.86726 1.25452 1.31900 1.83392 1.21094 0.88642 0.81620 0.70486 1.90809 1.66997 1.36852 1.46480 1.18933 0.89072 1.12129 0.94615 1.19800 0.93339 0.97083 0.94590 1.20895 0.99625 1.03419 0.92940 1.20927 0.92814 1.02340 0.97620 1.18695 0.90855 0.94556 0.93391 1.19672 0.92068 0.99613 1.01210 1.66989 1.11736 1.17679 1.19724 1.21193 0.88689 1.03146 1.02463 1.20399 0.99722 0.96471 0.96351 1.21635 1.01089 0.95498 0.95320 1.21438 0.94429 1.04534 1.04060 1.18585 0.92566 0.91641 0.93394 1.19389 1.06168 1.20686 1.00576 0.90689 1.26749 0.98265 0.94581 0.96621 1.69632 1.38729 1.21660 1.14192 0.85683 0.79028 0.80311 0.77105 1.17571 1.19883 1.18709 1.20983 0.92720 1.00720 0.98306 1.19743 0.93294 0.97552 0.94620 1.20868 0.99530 1.03215 0.93413 0.84852 0.91220 0.91545 0.89753 0.91540 0.88980 0.84989 0.91501 0.91939 0.89777 0.83850 0.86467 0.88972 0.85685 0.89696 0.90289 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.57 113.37 1.20 1.62 16 2 O -0.36 -10.13 10.58 -56.48 -0.60 -10.72 16 3 C 0.54 17.64 4.28 70.30 0.30 17.94 16 4 O -0.52 -18.53 16.90 19.88 0.34 -18.20 16 5 C -0.15 -5.30 5.76 -20.04 -0.12 -5.42 16 6 C -0.05 -1.67 5.89 -19.75 -0.12 -1.78 16 7 C -0.11 -2.96 9.61 71.24 0.68 -2.28 16 8 C -0.12 -4.61 9.26 22.38 0.21 -4.41 16 9 C 0.03 1.15 5.26 -20.01 -0.11 1.05 16 10 C 0.01 0.62 6.42 42.45 0.27 0.89 16 11 N -0.45 -20.41 10.05 -171.14 -1.72 -22.13 16 12 C -0.01 -0.56 6.79 42.75 0.29 -0.27 16 13 C -0.07 -2.10 10.15 71.24 0.72 -1.38 16 14 C -0.12 -4.55 9.65 22.11 0.21 -4.33 16 15 C -0.22 -9.83 7.31 22.66 0.17 -9.67 16 16 C 0.04 2.11 5.12 -21.02 -0.11 2.01 16 17 C -0.44 -22.58 7.21 23.37 0.17 -22.41 16 18 H 0.08 4.18 6.70 -2.91 -0.02 4.16 16 19 C 0.06 2.76 5.44 85.32 0.46 3.22 16 20 N -0.82 -40.59 13.92 21.86 0.30 -40.29 16 21 Si 0.95 39.23 24.53 68.60 1.68 40.91 16 22 H -0.25 -9.59 6.46 99.48 0.64 -8.95 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.26 -11.42 7.00 99.48 0.70 -10.72 16 25 C -0.11 -4.66 7.46 22.38 0.17 -4.49 16 26 C -0.05 -1.97 5.89 -19.75 -0.12 -2.09 16 27 C -0.11 -3.61 9.61 71.24 0.68 -2.92 16 28 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 1.65 7.07 -2.39 -0.02 1.63 16 33 H 0.09 2.08 8.08 -2.39 -0.02 2.06 16 34 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.97 8.07 -2.39 -0.02 1.95 16 38 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.12 5.07 4.54 -2.91 -0.01 5.06 16 40 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 41 H 0.13 5.69 6.74 -2.91 -0.02 5.67 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 44 H 0.07 2.00 7.07 -2.38 -0.02 1.98 16 Total: -1.00 -61.86 365.97 5.94 -55.93 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.95 Total: 29.23 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.98 Total: -34.73 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -1.42 Total: -62.42 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.26 Total: -28.92 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.68 Total: 40.91 kcal Total: -61.86 5.94 -55.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244004438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.166 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds