Wall clock time and date at job start Tue Mar 31 2020 14:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46733 * 2 1 4 4 C 1.37827 * 119.97457 * 265.28084 * 3 2 1 5 5 C 1.39464 * 119.94977 * 180.26094 * 4 3 2 6 6 C 1.48209 * 120.05480 * 179.73920 * 5 4 3 7 7 C 1.39784 * 119.54600 * 359.72413 * 6 5 4 8 8 C 1.37781 * 121.15243 * 179.97438 * 7 6 5 9 9 C 1.39545 * 120.19418 * 359.97020 * 8 7 6 10 10 C 1.47114 * 120.43951 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99725 * 176.00169 * 10 9 8 12 12 O 1.34832 * 120.00182 * 356.01009 * 10 9 8 13 13 C 1.45196 * 117.00006 * 179.97438 * 12 10 9 14 14 C 1.46508 * 119.11699 * 0.02853 * 9 8 7 15 15 C 1.40921 * 120.54601 * 179.97438 * 14 9 8 16 16 H 1.08001 * 120.00238 * 32.99282 * 15 14 9 17 17 C 1.40271 * 119.99795 * 212.99354 * 15 14 9 18 18 N 1.30624 * 120.00141 * 9.36601 * 17 15 14 19 19 Si 1.86803 * 120.00013 * 189.36693 * 17 15 14 20 20 H 1.48504 * 109.47183 * 59.99943 * 19 17 15 21 21 H 1.48506 * 109.47266 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47292 * 299.99886 * 19 17 15 23 23 C 1.38790 * 119.55459 * 179.44428 * 6 5 4 24 24 C 1.39510 * 119.89740 * 359.46071 * 5 4 3 25 25 C 1.37784 * 119.94785 * 0.27990 * 24 5 4 26 26 C 1.39039 * 119.97501 * 85.00315 * 3 2 1 27 27 N 1.39461 * 119.94838 * 0.02562 * 26 3 2 28 28 H 1.09002 * 109.47329 * 60.00448 * 1 2 3 29 29 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47199 * 300.00036 * 1 2 3 31 31 H 1.09000 * 109.47227 * 240.00439 * 2 1 3 32 32 H 1.08992 * 109.47516 * 120.00084 * 2 1 3 33 33 H 1.08001 * 120.02778 * 0.02562 * 4 3 2 34 34 H 1.07993 * 119.42484 * 359.95314 * 7 6 5 35 35 H 1.08003 * 119.89842 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47216 * 59.99772 * 13 12 10 37 37 H 1.08997 * 109.47396 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47351 * 299.99879 * 13 12 10 39 39 H 0.97003 * 120.00142 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.13227 * 0.02562 * 23 6 5 41 41 H 1.07998 * 120.02805 * 180.26081 * 24 5 4 42 42 H 1.08008 * 119.97332 * 180.02562 * 25 24 5 43 43 H 0.97001 * 120.00091 * 179.97438 * 27 26 3 44 44 H 0.97000 * 120.00024 * 359.97438 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3544 2.0374 -1.1899 5 6 2.8243 3.3504 -1.1888 6 6 3.1768 4.0137 -2.4665 7 6 3.0403 3.3122 -3.6679 8 6 3.3578 3.8967 -4.8745 9 6 3.8247 5.2110 -4.9164 10 6 4.1648 5.8405 -6.2018 11 8 4.5012 7.0081 -6.2366 12 8 4.1033 5.1225 -7.3414 13 6 4.4521 5.8086 -8.5725 14 6 3.9717 5.9556 -3.6633 15 6 4.4411 7.2844 -3.6705 16 1 4.2052 7.9359 -4.4990 17 6 5.2146 7.7608 -2.6017 18 7 5.6539 6.9317 -1.6929 19 14 5.6164 9.5809 -2.4780 20 1 4.3561 10.3608 -2.3844 21 1 6.4411 9.8246 -1.2672 22 1 6.3720 10.0041 -3.6842 23 6 3.6325 5.3246 -2.4544 24 6 2.9565 4.0407 0.0163 25 6 2.6282 3.4222 1.2029 26 6 2.1649 2.1108 1.1998 27 7 1.8333 1.4867 2.4021 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2466 1.5027 -2.1221 34 1 2.6799 2.2944 -3.6499 35 1 3.2450 3.3358 -5.7906 36 1 5.4786 6.1697 -8.5089 37 1 4.3614 5.1186 -9.4113 38 1 3.7786 6.6527 -8.7215 39 1 6.1892 7.2611 -0.9540 40 1 3.7293 5.8563 -1.5193 41 1 3.3162 5.0591 0.0192 42 1 2.7300 3.9563 2.1361 43 1 1.9259 1.9671 3.2397 44 1 1.5102 0.5721 2.4008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244305870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:42 Heat of formation + Delta-G solvation = -54.696832 kcal Electronic energy + Delta-G solvation = -26620.833615 eV Core-core repulsion = 22887.938879 eV Total energy + Delta-G solvation = -3732.894736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.48432 -39.12293 -37.21343 -35.30792 -34.51335 -33.74224 -33.51030 -30.62497 -29.94932 -29.18650 -27.64713 -26.53224 -25.51679 -23.73514 -22.78645 -21.91670 -20.81360 -20.05743 -19.15425 -17.51620 -16.86078 -16.76018 -16.41083 -15.71435 -15.49484 -15.30404 -14.84772 -14.18665 -14.07169 -13.72290 -13.61823 -13.27200 -13.09874 -12.91620 -12.86570 -12.54933 -12.46609 -12.04002 -11.85224 -11.62967 -11.51212 -11.37013 -11.23021 -11.17941 -10.96838 -10.79539 -10.72895 -10.37982 -10.17509 -10.08265 -9.90892 -9.54676 -9.35534 -8.79997 -8.36169 -7.94835 -7.45380 -6.97617 -6.57860 -4.53100 1.55092 1.86872 2.52000 2.81615 3.02392 3.07834 3.22276 3.79086 3.85609 3.87813 4.04541 4.38366 4.66603 4.96462 5.01021 5.31610 5.41909 5.54505 5.58407 5.60973 5.62507 5.70575 5.76079 5.84874 5.87625 5.93364 6.00753 6.14716 6.15644 6.27776 6.31434 6.47591 6.55856 6.65775 6.85795 6.90785 6.95444 7.05646 7.21688 7.28559 7.34572 7.52463 7.62925 7.74622 7.88498 7.89198 7.95551 8.11734 8.52264 8.66207 8.75702 9.13396 9.98190 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.003836 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.019360 B = 7298.013168 C = 9488.552787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.166 4.166 4 C -0.066 4.066 5 C -0.075 4.075 6 C -0.010 4.010 7 C -0.244 4.244 8 C -0.028 4.028 9 C -0.263 4.263 10 C 0.503 3.497 11 O -0.523 6.523 12 O -0.374 6.374 13 C 0.041 3.959 14 C 0.151 3.849 15 C -0.411 4.411 16 H 0.111 0.889 17 C 0.069 3.931 18 N -0.778 5.778 19 Si 0.919 3.081 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.143 4.143 24 C -0.064 4.064 25 C -0.196 4.196 26 C 0.204 3.796 27 N -0.883 5.883 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.287 0.713 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.114 0.886 43 H 0.393 0.607 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -8.814 4.887 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.171 4.171 4 C -0.084 4.084 5 C -0.076 4.076 6 C -0.011 4.011 7 C -0.263 4.263 8 C -0.046 4.046 9 C -0.266 4.266 10 C 0.355 3.645 11 O -0.415 6.415 12 O -0.293 6.293 13 C -0.054 4.054 14 C 0.147 3.853 15 C -0.438 4.438 16 H 0.128 0.872 17 C -0.152 4.152 18 N -0.402 5.402 19 Si 0.743 3.257 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.162 4.162 24 C -0.082 4.082 25 C -0.219 4.219 26 C 0.101 3.899 27 N -0.424 5.424 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.220 0.780 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.397 -8.451 5.021 11.215 hybrid contribution 0.377 0.692 0.304 0.844 sum -5.020 -7.760 5.325 10.666 Atomic orbital electron populations 1.21778 0.95421 1.00967 1.02340 1.20280 0.95564 0.93187 1.01936 1.19160 1.09312 0.96644 0.91952 1.20931 0.96707 0.94179 0.96607 1.18871 1.01899 0.93738 0.93127 1.18536 0.97877 0.93882 0.90758 1.20223 1.14731 0.99612 0.91782 1.20706 0.94327 0.93133 0.96468 1.19735 1.22158 0.95414 0.89320 1.21304 0.74960 0.84672 0.83602 1.90701 1.46578 1.17638 1.86574 1.86590 1.81812 1.44886 1.15998 1.22956 1.00498 0.97534 0.84375 1.18359 0.86557 0.91804 0.88561 1.20350 1.23338 0.96559 1.03585 0.87154 1.26211 0.94427 1.00711 0.93811 1.69711 1.24085 1.36939 1.09507 0.86159 0.79580 0.81311 0.78653 1.18485 1.20206 1.18493 1.21412 1.02687 0.93706 0.98379 1.21166 0.96101 0.99857 0.91088 1.20448 1.08942 0.94069 0.98425 1.17553 0.94648 0.91775 0.85892 1.42412 1.76988 1.17266 1.05691 0.92315 0.92989 0.92897 0.91223 0.92234 0.85981 0.88534 0.87859 0.92824 0.89505 0.92881 0.90235 0.85587 0.85322 0.86790 0.77978 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 37.16 0.37 -1.11 16 2 C -0.07 -0.80 5.49 -27.88 -0.15 -0.96 16 3 C -0.17 -2.41 5.15 -104.48 -0.54 -2.95 16 4 C -0.07 -1.11 9.03 -39.28 -0.35 -1.47 16 5 C -0.07 -1.46 5.88 -104.87 -0.62 -2.07 16 6 C -0.01 -0.22 5.86 -105.02 -0.62 -0.84 16 7 C -0.24 -5.26 9.37 -39.17 -0.37 -5.62 16 8 C -0.03 -0.63 9.60 -39.26 -0.38 -1.00 16 9 C -0.26 -6.63 6.07 -102.48 -0.62 -7.25 16 10 C 0.50 12.29 7.87 34.33 0.27 12.56 16 11 O -0.52 -13.76 13.47 -19.31 -0.26 -14.02 16 12 O -0.37 -7.77 9.83 -40.85 -0.40 -8.17 16 13 C 0.04 0.66 10.57 101.05 1.07 1.72 16 14 C 0.15 4.00 5.66 -104.69 -0.59 3.41 16 15 C -0.41 -11.00 7.96 -37.80 -0.30 -11.30 16 16 H 0.11 3.05 5.75 -52.49 -0.30 2.75 16 17 C 0.07 1.69 5.26 -17.30 -0.09 1.60 16 18 N -0.78 -19.19 11.10 55.56 0.62 -18.57 16 19 Si 0.92 18.82 29.57 -169.99 -5.03 13.79 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.14 -3.53 8.00 -38.52 -0.31 -3.84 16 24 C -0.06 -1.17 9.40 -39.27 -0.37 -1.54 16 25 C -0.20 -3.05 9.88 -39.43 -0.39 -3.43 16 26 C 0.20 2.88 6.74 -83.78 -0.56 2.31 16 27 N -0.88 -8.96 8.98 32.43 0.29 -8.67 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.75 8.05 -51.93 -0.42 0.34 16 32 H 0.06 0.57 6.80 -51.93 -0.35 0.22 16 33 H 0.12 1.93 6.12 -52.49 -0.32 1.61 16 34 H 0.10 1.81 6.09 -52.49 -0.32 1.49 16 35 H 0.10 2.07 7.62 -52.48 -0.40 1.67 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 40 H 0.13 3.10 4.61 -52.48 -0.24 2.86 16 41 H 0.13 2.45 6.14 -52.49 -0.32 2.13 16 42 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 43 H 0.39 3.26 8.84 -40.82 -0.36 2.90 16 44 H 0.39 3.34 6.91 -40.82 -0.28 3.06 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -29.58 364.06 -9.26 -38.84 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.41 Total: 13.07 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -4.55 Total: -21.76 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.91 Total: -27.24 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.66 Total: -22.19 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.58 -9.26 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244305870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.852 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds