Wall clock time and date at job start Tue Mar 31 2020 14:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46733 * 2 1 4 4 C 1.37827 * 119.97457 * 265.28084 * 3 2 1 5 5 C 1.39464 * 119.94977 * 180.26094 * 4 3 2 6 6 C 1.48209 * 120.05480 * 179.73920 * 5 4 3 7 7 C 1.39784 * 119.54600 * 359.72413 * 6 5 4 8 8 C 1.37781 * 121.15243 * 179.97438 * 7 6 5 9 9 C 1.39545 * 120.19418 * 359.97020 * 8 7 6 10 10 C 1.47114 * 120.43951 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99725 * 176.00169 * 10 9 8 12 12 O 1.34832 * 120.00182 * 356.01009 * 10 9 8 13 13 C 1.45196 * 117.00006 * 179.97438 * 12 10 9 14 14 C 1.46508 * 119.11699 * 0.02853 * 9 8 7 15 15 C 1.40921 * 120.54601 * 179.97438 * 14 9 8 16 16 H 1.08001 * 120.00238 * 32.99282 * 15 14 9 17 17 C 1.40271 * 119.99795 * 212.99354 * 15 14 9 18 18 N 1.30624 * 120.00141 * 9.36601 * 17 15 14 19 19 Si 1.86803 * 120.00013 * 189.36693 * 17 15 14 20 20 H 1.48504 * 109.47183 * 59.99943 * 19 17 15 21 21 H 1.48506 * 109.47266 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47292 * 299.99886 * 19 17 15 23 23 C 1.38790 * 119.55459 * 179.44428 * 6 5 4 24 24 C 1.39510 * 119.89740 * 359.46071 * 5 4 3 25 25 C 1.37784 * 119.94785 * 0.27990 * 24 5 4 26 26 C 1.39039 * 119.97501 * 85.00315 * 3 2 1 27 27 N 1.39461 * 119.94838 * 0.02562 * 26 3 2 28 28 H 1.09002 * 109.47329 * 60.00448 * 1 2 3 29 29 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47199 * 300.00036 * 1 2 3 31 31 H 1.09000 * 109.47227 * 240.00439 * 2 1 3 32 32 H 1.08992 * 109.47516 * 120.00084 * 2 1 3 33 33 H 1.08001 * 120.02778 * 0.02562 * 4 3 2 34 34 H 1.07993 * 119.42484 * 359.95314 * 7 6 5 35 35 H 1.08003 * 119.89842 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47216 * 59.99772 * 13 12 10 37 37 H 1.08997 * 109.47396 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47351 * 299.99879 * 13 12 10 39 39 H 0.97003 * 120.00142 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.13227 * 0.02562 * 23 6 5 41 41 H 1.07998 * 120.02805 * 180.26081 * 24 5 4 42 42 H 1.08008 * 119.97332 * 180.02562 * 25 24 5 43 43 H 0.97001 * 120.00091 * 179.97438 * 27 26 3 44 44 H 0.97000 * 120.00024 * 359.97438 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3544 2.0374 -1.1899 5 6 2.8243 3.3504 -1.1888 6 6 3.1768 4.0137 -2.4665 7 6 3.0403 3.3122 -3.6679 8 6 3.3578 3.8967 -4.8745 9 6 3.8247 5.2110 -4.9164 10 6 4.1648 5.8405 -6.2018 11 8 4.5012 7.0081 -6.2366 12 8 4.1033 5.1225 -7.3414 13 6 4.4521 5.8086 -8.5725 14 6 3.9717 5.9556 -3.6633 15 6 4.4411 7.2844 -3.6705 16 1 4.2052 7.9359 -4.4990 17 6 5.2146 7.7608 -2.6017 18 7 5.6539 6.9317 -1.6929 19 14 5.6164 9.5809 -2.4780 20 1 4.3561 10.3608 -2.3844 21 1 6.4411 9.8246 -1.2672 22 1 6.3720 10.0041 -3.6842 23 6 3.6325 5.3246 -2.4544 24 6 2.9565 4.0407 0.0163 25 6 2.6282 3.4222 1.2029 26 6 2.1649 2.1108 1.1998 27 7 1.8333 1.4867 2.4021 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2466 1.5027 -2.1221 34 1 2.6799 2.2944 -3.6499 35 1 3.2450 3.3358 -5.7906 36 1 5.4786 6.1697 -8.5089 37 1 4.3614 5.1186 -9.4113 38 1 3.7786 6.6527 -8.7215 39 1 6.1892 7.2611 -0.9540 40 1 3.7293 5.8563 -1.5193 41 1 3.3162 5.0591 0.0192 42 1 2.7300 3.9563 2.1361 43 1 1.9259 1.9671 3.2397 44 1 1.5102 0.5721 2.4008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244305870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:42 Heat of formation + Delta-G solvation = -69.948772 kcal Electronic energy + Delta-G solvation = -26621.494989 eV Core-core repulsion = 22887.938879 eV Total energy + Delta-G solvation = -3733.556110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02889 -40.63440 -38.86996 -37.04778 -36.01157 -35.35121 -34.53993 -32.18777 -31.68502 -30.42875 -29.06261 -27.96730 -27.25326 -24.84403 -24.34412 -23.25811 -22.48232 -21.57548 -20.68838 -19.26663 -18.40039 -17.93999 -17.82187 -17.36132 -17.13113 -16.97016 -16.34265 -15.47617 -15.36916 -15.07121 -14.90748 -14.61191 -14.53395 -14.34917 -14.28165 -14.14940 -13.93182 -13.46369 -13.24654 -13.04755 -12.93508 -12.79732 -12.74530 -12.61147 -12.56352 -12.33242 -11.94975 -11.75099 -11.63175 -11.57324 -11.46273 -11.21351 -11.11360 -10.67595 -9.63580 -9.49378 -9.29986 -8.77451 -7.94034 -6.47032 -0.05975 0.61053 0.95682 1.04177 1.33188 1.44832 1.53709 2.10411 2.16993 2.17873 2.68961 3.08790 3.10685 3.70890 3.91461 4.00725 4.07469 4.32720 4.38797 4.39595 4.43680 4.49776 4.52952 4.59579 4.64425 4.70963 4.73918 4.79685 5.01200 5.05391 5.09589 5.15360 5.18874 5.23031 5.31423 5.39116 5.47960 5.54946 5.61070 5.70891 5.81714 5.86706 6.00516 6.06859 6.20100 6.33806 6.62345 6.68157 6.75798 6.88314 7.08027 7.29226 8.18880 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.003836 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.019360 B = 7298.013168 C = 9488.552787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.168 4.168 4 C -0.064 4.064 5 C -0.116 4.116 6 C -0.002 4.002 7 C -0.242 4.242 8 C -0.027 4.027 9 C -0.295 4.295 10 C 0.502 3.498 11 O -0.553 6.553 12 O -0.373 6.373 13 C 0.033 3.967 14 C 0.126 3.874 15 C -0.452 4.452 16 H 0.090 0.910 17 C 0.035 3.965 18 N -0.803 5.803 19 Si 0.982 3.018 20 H -0.256 1.256 21 H -0.255 1.255 22 H -0.270 1.270 23 C -0.174 4.174 24 C -0.077 4.077 25 C -0.204 4.204 26 C 0.220 3.780 27 N -0.862 5.862 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.050 0.950 37 H 0.135 0.865 38 H 0.054 0.946 39 H 0.295 0.705 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.406 0.594 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.711 -11.695 6.262 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.173 4.173 4 C -0.083 4.083 5 C -0.118 4.118 6 C -0.002 4.002 7 C -0.261 4.261 8 C -0.045 4.045 9 C -0.298 4.298 10 C 0.354 3.646 11 O -0.447 6.447 12 O -0.291 6.291 13 C -0.061 4.061 14 C 0.122 3.878 15 C -0.480 4.480 16 H 0.108 0.892 17 C -0.183 4.183 18 N -0.427 5.427 19 Si 0.802 3.198 20 H -0.180 1.180 21 H -0.179 1.179 22 H -0.195 1.195 23 C -0.193 4.193 24 C -0.095 4.095 25 C -0.226 4.226 26 C 0.114 3.886 27 N -0.403 5.403 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.153 0.847 43 H 0.235 0.765 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.463 -11.388 6.427 14.587 hybrid contribution 0.593 1.312 -0.067 1.441 sum -5.870 -10.076 6.360 13.283 Atomic orbital electron populations 1.21751 0.94391 1.02306 1.01751 1.20365 0.96294 0.90807 1.03346 1.19526 1.08255 0.98342 0.91135 1.21052 0.96064 0.93002 0.98136 1.18822 1.05570 0.95346 0.92047 1.18932 0.95380 0.93079 0.92827 1.20638 1.13462 1.00902 0.91063 1.20997 0.93352 0.92208 0.97958 1.20090 1.23326 0.96812 0.89592 1.21305 0.74364 0.84349 0.84532 1.90673 1.47941 1.18855 1.87232 1.86540 1.81381 1.44742 1.16417 1.23378 1.00318 0.98944 0.83414 1.18744 0.86804 0.92343 0.89883 1.20340 1.26019 0.97165 1.04448 0.89239 1.26900 0.93690 1.04652 0.93050 1.69740 1.24509 1.38485 1.09987 0.85256 0.79529 0.76189 0.78802 1.17996 1.17887 1.19518 1.21347 1.05277 0.95136 0.97536 1.21098 0.96997 0.99239 0.92198 1.20614 1.08908 0.94999 0.98124 1.17639 0.92582 0.91138 0.87234 1.42380 1.75215 1.17802 1.04911 0.93658 0.90725 0.92789 0.90643 0.90117 0.85069 0.85201 0.85285 0.93123 0.84721 0.92748 0.89407 0.86661 0.87506 0.84720 0.76466 0.76298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.61 16 2 C -0.07 -1.28 5.49 29.85 0.16 -1.12 16 3 C -0.17 -4.39 5.15 -19.77 -0.10 -4.49 16 4 C -0.06 -2.07 9.03 22.47 0.20 -1.86 16 5 C -0.12 -4.58 5.88 -20.02 -0.12 -4.70 16 6 C 0.00 -0.07 5.86 -20.12 -0.12 -0.19 16 7 C -0.24 -10.38 9.37 22.54 0.21 -10.17 16 8 C -0.03 -1.22 9.60 22.48 0.22 -1.00 16 9 C -0.30 -15.54 6.07 -18.48 -0.11 -15.65 16 10 C 0.50 25.50 7.87 70.15 0.55 26.05 16 11 O -0.55 -30.67 13.47 19.65 0.26 -30.41 16 12 O -0.37 -15.48 9.83 -57.45 -0.56 -16.05 16 13 C 0.03 1.02 10.57 113.37 1.20 2.22 16 14 C 0.13 7.12 5.66 -19.91 -0.11 7.01 16 15 C -0.45 -26.00 7.96 23.42 0.19 -25.82 16 16 H 0.09 5.37 5.75 -2.91 -0.02 5.35 16 17 C 0.03 1.81 5.26 85.37 0.45 2.26 16 18 N -0.80 -41.76 11.10 21.88 0.24 -41.51 16 19 Si 0.98 40.34 29.57 68.60 2.03 42.36 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.17 -9.17 8.00 22.96 0.18 -8.98 16 24 C -0.08 -2.88 9.40 22.47 0.21 -2.67 16 25 C -0.20 -6.06 9.88 22.37 0.22 -5.84 16 26 C 0.22 5.55 6.74 38.32 0.26 5.81 16 27 N -0.86 -13.86 8.98 -51.32 -0.46 -14.32 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 32 H 0.08 1.15 6.80 -2.39 -0.02 1.13 16 33 H 0.13 3.87 6.12 -2.91 -0.02 3.85 16 34 H 0.13 4.61 6.09 -2.91 -0.02 4.59 16 35 H 0.13 5.04 7.62 -2.91 -0.02 5.01 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.29 13.73 8.29 -92.71 -0.77 12.96 16 40 H 0.12 6.18 4.61 -2.91 -0.01 6.16 16 41 H 0.11 4.40 6.14 -2.91 -0.02 4.38 16 42 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 43 H 0.41 5.01 8.84 -92.71 -0.82 4.19 16 44 H 0.41 4.89 6.91 -92.71 -0.64 4.25 16 Total: -1.00 -69.81 364.06 5.32 -64.49 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.39 Total: 36.21 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 4.20 Total: -40.77 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.22 Total: -55.84 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.30 Total: -46.46 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -69.81 5.32 -64.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244305870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.461 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds