Wall clock time and date at job start Tue Mar 31 2020 13:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34704 * 117.00064 * 2 1 4 4 O 1.21472 * 120.00236 * 0.02562 * 3 2 1 5 5 C 1.47748 * 120.00076 * 179.97438 * 3 2 1 6 6 C 1.39365 * 120.07550 * 353.59546 * 5 3 2 7 7 C 1.39386 * 119.69496 * 179.97438 * 6 5 3 8 8 C 1.47837 * 120.08240 * 179.97438 * 7 6 5 9 9 N 1.32571 * 119.99379 * 128.47803 * 8 7 6 10 10 C 1.31753 * 121.72326 * 180.27032 * 9 8 7 11 11 C 1.50695 * 119.24807 * 179.71064 * 10 9 8 12 12 C 1.38865 * 121.50211 * 359.42976 * 10 9 8 13 13 C 1.36889 * 119.79728 * 0.27992 * 12 10 9 14 14 C 1.41127 * 118.39663 * 359.97438 * 13 12 10 15 15 C 1.40882 * 120.71814 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99620 * 146.83304 * 15 14 13 17 17 C 1.40069 * 120.00722 * 326.83756 * 15 14 13 18 18 N 1.30775 * 119.99777 * 1.13021 * 17 15 14 19 19 Si 1.86798 * 120.00650 * 181.13469 * 17 15 14 20 20 H 1.48500 * 109.47121 * 89.99422 * 19 17 15 21 21 H 1.48494 * 109.47595 * 209.99673 * 19 17 15 22 22 H 1.48505 * 109.46765 * 329.99913 * 19 17 15 23 23 C 1.39794 * 119.84090 * 0.25632 * 7 6 5 24 24 C 1.50702 * 119.92238 * 179.74720 * 23 7 6 25 25 C 1.38020 * 120.14996 * 359.50523 * 23 7 6 26 26 C 1.38129 * 120.31224 * 0.47530 * 25 23 7 27 27 C 1.50696 * 119.92360 * 179.76054 * 26 25 23 28 28 H 1.08990 * 109.47416 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47124 * 300.00617 * 1 2 3 30 30 H 1.09006 * 109.46665 * 59.99624 * 1 2 3 31 31 H 1.08006 * 120.15256 * 359.95544 * 6 5 3 32 32 H 1.08995 * 109.46931 * 269.72849 * 11 10 9 33 33 H 1.08997 * 109.47283 * 149.72524 * 11 10 9 34 34 H 1.09006 * 109.47125 * 29.72888 * 11 10 9 35 35 H 1.07992 * 120.10249 * 180.30817 * 12 10 9 36 36 H 1.08001 * 120.80603 * 180.02562 * 13 12 10 37 37 H 0.96997 * 120.00303 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47370 * 93.01136 * 24 23 7 39 39 H 1.09000 * 109.46573 * 213.00933 * 24 23 7 40 40 H 1.09002 * 109.47115 * 333.00562 * 24 23 7 41 41 H 1.08004 * 119.84586 * 180.23341 * 25 23 7 42 42 H 1.08999 * 109.47405 * 264.03344 * 27 26 25 43 43 H 1.09005 * 109.47164 * 24.03387 * 27 26 25 44 44 H 1.09000 * 109.47018 * 144.02665 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5391 1.2775 0.0006 6 6 4.2992 0.1173 0.1356 7 6 5.6906 0.1994 0.1346 8 6 6.5053 -1.0259 0.2779 9 7 7.4720 -1.2845 -0.5917 10 6 8.2151 -2.3686 -0.4995 11 6 9.2947 -2.6104 -1.5226 12 6 8.0299 -3.2904 0.5224 13 6 7.0525 -3.0819 1.4578 14 6 6.2568 -1.9213 1.3499 15 6 5.2376 -1.6579 2.2861 16 1 5.0038 -0.6390 2.5575 17 6 4.5274 -2.7173 2.8651 18 7 4.8253 -3.9519 2.5532 19 14 3.1546 -2.3669 4.0825 20 1 1.8686 -2.2307 3.3526 21 1 3.0566 -3.4859 5.0537 22 1 3.4475 -1.1052 4.8089 23 6 6.3139 1.4438 0.0037 24 6 7.8182 1.5353 0.0081 25 6 5.5549 2.5882 -0.1346 26 6 4.1756 2.5141 -0.1348 27 6 3.3553 3.7698 -0.2810 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8123 -0.8411 0.2409 32 1 8.8850 -3.1830 -2.3547 33 1 10.1110 -3.1687 -1.0644 34 1 9.6690 -1.6544 -1.8888 35 1 8.6554 -4.1690 0.5792 36 1 6.8946 -3.7879 2.2597 37 1 4.3333 -4.6856 2.9538 38 1 8.1874 1.4987 -1.0168 39 1 8.1237 2.4736 0.4710 40 1 8.2314 0.6998 0.5733 41 1 6.0416 3.5466 -0.2392 42 1 3.0616 4.1288 0.7054 43 1 3.9475 4.5341 -0.7843 44 1 2.4636 3.5548 -0.8698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245555336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:05 Heat of formation + Delta-G solvation = -47.647737 kcal Electronic energy + Delta-G solvation = -27736.296175 eV Core-core repulsion = 24003.707110 eV Total energy + Delta-G solvation = -3732.589064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35727 -39.15187 -37.97574 -36.20192 -34.36167 -33.34599 -32.09683 -30.96208 -30.47690 -28.31566 -27.75802 -26.78886 -26.42022 -24.19663 -22.47995 -21.76051 -21.34648 -20.52923 -19.39784 -17.51559 -17.31621 -16.57517 -16.11656 -15.65743 -15.08391 -14.69370 -14.43195 -14.33915 -13.98162 -13.72283 -13.39765 -13.27714 -13.03447 -12.94854 -12.56775 -12.51732 -12.18321 -11.97803 -11.92329 -11.81506 -11.65735 -11.51407 -11.42054 -11.16485 -11.11086 -10.99574 -10.93816 -10.68710 -10.55872 -10.50802 -9.95076 -9.72381 -9.44252 -8.53972 -8.31691 -8.13815 -7.97250 -7.32102 -6.85151 -4.58607 1.17927 1.79421 2.50465 2.81215 2.97930 3.00301 3.01558 3.03385 3.10999 3.81578 4.24678 4.51652 5.01869 5.16754 5.22478 5.24619 5.29451 5.37030 5.44684 5.56189 5.66752 5.72392 5.83661 5.96163 5.99538 6.02496 6.17895 6.20349 6.23694 6.29496 6.34986 6.38863 6.45477 6.54206 6.58884 6.68219 6.74725 6.80882 6.92930 6.96229 7.02389 7.15090 7.29784 7.40768 7.61969 7.80617 7.88361 8.06374 8.33505 8.58034 8.62578 9.48185 10.01437 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.006189 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.534931 B = 4522.758144 C = 6598.941641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.350 6.350 3 C 0.514 3.486 4 O -0.516 6.516 5 C -0.151 4.151 6 C -0.022 4.022 7 C 0.004 3.996 8 C 0.024 3.976 9 N -0.448 5.448 10 C -0.002 4.002 11 C -0.075 4.075 12 C -0.147 4.147 13 C -0.119 4.119 14 C 0.081 3.919 15 C -0.439 4.439 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.798 5.798 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.034 4.034 24 C -0.104 4.104 25 C -0.144 4.144 26 C -0.034 4.034 27 C -0.116 4.116 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.283 0.717 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 5.671 -2.691 6.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.362 3.638 4 O -0.407 6.407 5 C -0.152 4.152 6 C -0.041 4.041 7 C 0.003 3.997 8 C -0.114 4.114 9 N -0.156 5.156 10 C -0.143 4.143 11 C -0.132 4.132 12 C -0.167 4.167 13 C -0.145 4.145 14 C 0.077 3.923 15 C -0.469 4.469 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.423 5.423 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.035 4.035 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.034 4.034 27 C -0.172 4.172 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.207 6.265 -3.298 7.416 hybrid contribution -1.076 -0.771 1.336 1.881 sum -3.283 5.495 -1.961 6.694 Atomic orbital electron populations 1.23213 0.76772 1.03505 1.02132 1.86646 1.22891 1.32859 1.84183 1.21356 0.89343 0.81060 0.72068 1.90722 1.67212 1.35521 1.47248 1.18720 0.88280 0.94720 1.13502 1.21639 0.93138 0.97709 0.91658 1.18239 0.91648 0.91442 0.98367 1.19357 0.99197 0.97556 0.95288 1.66904 1.04004 1.18638 1.26089 1.20299 1.01083 0.93751 0.99203 1.20296 0.95487 1.00758 0.96709 1.21314 0.99613 0.98857 0.96933 1.21637 0.93656 0.99636 0.99581 1.18362 0.91525 0.91235 0.91222 1.19491 1.13942 0.94348 1.19148 0.89914 1.25926 0.98323 0.94447 0.95649 1.69688 1.36602 0.99730 1.36315 0.86258 0.81023 0.79403 0.80050 1.18858 1.20010 1.18326 1.20301 0.96393 0.92069 0.94698 1.20727 0.91081 1.01674 1.02557 1.20622 0.92191 0.97997 1.05398 1.19817 0.93728 0.93550 0.96326 1.21028 0.99869 0.93610 1.02700 0.88278 0.92093 0.92121 0.83935 0.93121 0.92887 0.92555 0.88319 0.84681 0.90569 0.90866 0.92778 0.90859 0.85873 0.91202 0.92651 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.55 16 2 O -0.35 -6.10 9.83 -40.50 -0.40 -6.50 16 3 C 0.51 9.41 7.82 34.62 0.27 9.69 16 4 O -0.52 -9.44 13.11 -19.24 -0.25 -9.70 16 5 C -0.15 -2.86 5.87 -105.03 -0.62 -3.48 16 6 C -0.02 -0.47 7.77 -38.74 -0.30 -0.77 16 7 C 0.00 0.08 5.02 -104.96 -0.53 -0.44 16 8 C 0.02 0.56 5.31 -82.23 -0.44 0.12 16 9 N -0.45 -10.20 8.78 -5.44 -0.05 -10.25 16 10 C 0.00 -0.04 6.79 -82.40 -0.56 -0.60 16 11 C -0.07 -1.27 10.15 36.00 0.37 -0.91 16 12 C -0.15 -3.22 9.64 -39.84 -0.38 -3.60 16 13 C -0.12 -2.88 8.72 -38.97 -0.34 -3.22 16 14 C 0.08 2.01 5.56 -106.41 -0.59 1.42 16 15 C -0.44 -10.75 7.02 -37.90 -0.27 -11.02 16 16 H 0.08 2.02 7.04 -52.48 -0.37 1.65 16 17 C 0.07 1.74 5.41 -17.32 -0.09 1.65 16 18 N -0.80 -19.14 10.65 55.55 0.59 -18.55 16 19 Si 0.91 18.09 29.56 -169.99 -5.03 13.07 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.03 -0.63 5.92 -104.12 -0.62 -1.25 16 24 C -0.10 -1.75 9.06 36.01 0.33 -1.42 16 25 C -0.14 -2.38 9.30 -39.70 -0.37 -2.75 16 26 C -0.03 -0.58 5.92 -104.11 -0.62 -1.19 16 27 C -0.12 -1.69 8.74 36.00 0.31 -1.38 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.14 3.15 7.01 -52.48 -0.37 2.78 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.14 3.34 6.23 -52.49 -0.33 3.02 16 37 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 1.40 6.55 -51.93 -0.34 1.06 16 41 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 44 H 0.09 1.36 5.80 -51.93 -0.30 1.06 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -27.04 366.07 -8.89 -35.93 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.90 Total: 8.06 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -3.37 Total: -17.59 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 0.54 Total: -28.80 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.65 Total: -16.19 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.04 -8.89 -35.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245555336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.714 kcal (2) G-P(sol) polarization free energy of solvation -27.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds