Wall clock time and date at job start Tue Mar 31 2020 13:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34704 * 117.00064 * 2 1 4 4 O 1.21472 * 120.00236 * 0.02562 * 3 2 1 5 5 C 1.47748 * 120.00076 * 179.97438 * 3 2 1 6 6 C 1.39365 * 120.07550 * 353.59546 * 5 3 2 7 7 C 1.39386 * 119.69496 * 179.97438 * 6 5 3 8 8 C 1.47837 * 120.08240 * 179.97438 * 7 6 5 9 9 N 1.32571 * 119.99379 * 128.47803 * 8 7 6 10 10 C 1.31753 * 121.72326 * 180.27032 * 9 8 7 11 11 C 1.50695 * 119.24807 * 179.71064 * 10 9 8 12 12 C 1.38865 * 121.50211 * 359.42976 * 10 9 8 13 13 C 1.36889 * 119.79728 * 0.27992 * 12 10 9 14 14 C 1.41127 * 118.39663 * 359.97438 * 13 12 10 15 15 C 1.40882 * 120.71814 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99620 * 146.83304 * 15 14 13 17 17 C 1.40069 * 120.00722 * 326.83756 * 15 14 13 18 18 N 1.30775 * 119.99777 * 1.13021 * 17 15 14 19 19 Si 1.86798 * 120.00650 * 181.13469 * 17 15 14 20 20 H 1.48500 * 109.47121 * 89.99422 * 19 17 15 21 21 H 1.48494 * 109.47595 * 209.99673 * 19 17 15 22 22 H 1.48505 * 109.46765 * 329.99913 * 19 17 15 23 23 C 1.39794 * 119.84090 * 0.25632 * 7 6 5 24 24 C 1.50702 * 119.92238 * 179.74720 * 23 7 6 25 25 C 1.38020 * 120.14996 * 359.50523 * 23 7 6 26 26 C 1.38129 * 120.31224 * 0.47530 * 25 23 7 27 27 C 1.50696 * 119.92360 * 179.76054 * 26 25 23 28 28 H 1.08990 * 109.47416 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47124 * 300.00617 * 1 2 3 30 30 H 1.09006 * 109.46665 * 59.99624 * 1 2 3 31 31 H 1.08006 * 120.15256 * 359.95544 * 6 5 3 32 32 H 1.08995 * 109.46931 * 269.72849 * 11 10 9 33 33 H 1.08997 * 109.47283 * 149.72524 * 11 10 9 34 34 H 1.09006 * 109.47125 * 29.72888 * 11 10 9 35 35 H 1.07992 * 120.10249 * 180.30817 * 12 10 9 36 36 H 1.08001 * 120.80603 * 180.02562 * 13 12 10 37 37 H 0.96997 * 120.00303 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47370 * 93.01136 * 24 23 7 39 39 H 1.09000 * 109.46573 * 213.00933 * 24 23 7 40 40 H 1.09002 * 109.47115 * 333.00562 * 24 23 7 41 41 H 1.08004 * 119.84586 * 180.23341 * 25 23 7 42 42 H 1.08999 * 109.47405 * 264.03344 * 27 26 25 43 43 H 1.09005 * 109.47164 * 24.03387 * 27 26 25 44 44 H 1.09000 * 109.47018 * 144.02665 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5391 1.2775 0.0006 6 6 4.2992 0.1173 0.1356 7 6 5.6906 0.1994 0.1346 8 6 6.5053 -1.0259 0.2779 9 7 7.4720 -1.2845 -0.5917 10 6 8.2151 -2.3686 -0.4995 11 6 9.2947 -2.6104 -1.5226 12 6 8.0299 -3.2904 0.5224 13 6 7.0525 -3.0819 1.4578 14 6 6.2568 -1.9213 1.3499 15 6 5.2376 -1.6579 2.2861 16 1 5.0038 -0.6390 2.5575 17 6 4.5274 -2.7173 2.8651 18 7 4.8253 -3.9519 2.5532 19 14 3.1546 -2.3669 4.0825 20 1 1.8686 -2.2307 3.3526 21 1 3.0566 -3.4859 5.0537 22 1 3.4475 -1.1052 4.8089 23 6 6.3139 1.4438 0.0037 24 6 7.8182 1.5353 0.0081 25 6 5.5549 2.5882 -0.1346 26 6 4.1756 2.5141 -0.1348 27 6 3.3553 3.7698 -0.2810 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8123 -0.8411 0.2409 32 1 8.8850 -3.1830 -2.3547 33 1 10.1110 -3.1687 -1.0644 34 1 9.6690 -1.6544 -1.8888 35 1 8.6554 -4.1690 0.5792 36 1 6.8946 -3.7879 2.2597 37 1 4.3333 -4.6856 2.9538 38 1 8.1874 1.4987 -1.0168 39 1 8.1237 2.4736 0.4710 40 1 8.2314 0.6998 0.5733 41 1 6.0416 3.5466 -0.2392 42 1 3.0616 4.1288 0.7054 43 1 3.9475 4.5341 -0.7843 44 1 2.4636 3.5548 -0.8698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245555336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:04 Heat of formation + Delta-G solvation = -58.957698 kcal Electronic energy + Delta-G solvation = -27736.786612 eV Core-core repulsion = 24003.707110 eV Total energy + Delta-G solvation = -3733.079501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74953 -40.74024 -39.50730 -37.56294 -36.11276 -34.79882 -33.58676 -32.63097 -32.06389 -29.73115 -29.21523 -28.11498 -27.73641 -25.84063 -24.01982 -23.23519 -22.88273 -22.16298 -20.85243 -19.25530 -18.78770 -17.97673 -17.43445 -17.38150 -16.60211 -16.18578 -15.96731 -15.85276 -15.59819 -15.02042 -14.81679 -14.78076 -14.35445 -14.26419 -14.15901 -13.79209 -13.61465 -13.54976 -13.35063 -13.07197 -13.05409 -12.98902 -12.87711 -12.69093 -12.63370 -12.53330 -12.37266 -12.26592 -12.02513 -11.80056 -11.63950 -11.18720 -11.09447 -10.23440 -9.90954 -9.73772 -9.60843 -9.01077 -8.60079 -6.41364 -0.26410 0.26582 0.83130 1.11301 1.32958 1.44061 1.45311 1.52336 1.75374 2.15308 2.72096 2.80140 3.52845 3.71665 3.79317 3.90910 3.98733 4.20297 4.24299 4.29564 4.36229 4.41815 4.47520 4.62460 4.65157 4.71723 4.84138 4.86183 4.87707 4.90023 4.96254 4.99591 5.01675 5.06125 5.13968 5.21859 5.24743 5.29147 5.34637 5.38968 5.47293 5.61410 5.76837 5.84947 5.94333 6.05942 6.11036 6.52655 6.69131 6.77750 6.82775 7.71686 8.28209 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.006189 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.534931 B = 4522.758144 C = 6598.941641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.513 3.487 4 O -0.518 6.518 5 C -0.164 4.164 6 C -0.034 4.034 7 C -0.028 4.028 8 C 0.022 3.978 9 N -0.458 5.458 10 C -0.006 4.006 11 C -0.070 4.070 12 C -0.153 4.153 13 C -0.140 4.140 14 C 0.050 3.950 15 C -0.459 4.459 16 H 0.071 0.929 17 C 0.040 3.960 18 N -0.827 5.827 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.262 1.262 22 H -0.262 1.262 23 C -0.038 4.038 24 C -0.097 4.097 25 C -0.132 4.132 26 C -0.029 4.029 27 C -0.111 4.111 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.289 0.711 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.166 0.834 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 7.625 -3.446 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.361 3.639 4 O -0.410 6.410 5 C -0.165 4.165 6 C -0.053 4.053 7 C -0.029 4.029 8 C -0.116 4.116 9 N -0.167 5.167 10 C -0.147 4.147 11 C -0.127 4.127 12 C -0.173 4.173 13 C -0.167 4.167 14 C 0.045 3.955 15 C -0.489 4.489 16 H 0.089 0.911 17 C -0.175 4.175 18 N -0.453 5.453 19 Si 0.786 3.214 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.186 1.186 23 C -0.039 4.039 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.030 4.030 27 C -0.166 4.166 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.183 0.817 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.928 8.209 -4.061 9.360 hybrid contribution -1.126 -1.340 1.454 2.276 sum -3.054 6.869 -2.607 7.956 Atomic orbital electron populations 1.23566 0.74373 1.05456 1.03014 1.86631 1.25410 1.32623 1.83914 1.21273 0.89220 0.81319 0.72133 1.90707 1.67246 1.35485 1.47563 1.18933 0.88854 0.94981 1.13735 1.21382 0.93238 0.97421 0.93303 1.18339 0.91748 0.91994 1.00802 1.19718 0.99153 0.98055 0.94681 1.67046 1.04327 1.19331 1.25977 1.21124 1.01239 0.92799 0.99582 1.20361 0.94677 1.01840 0.95867 1.21615 0.99256 0.99933 0.96451 1.21647 0.94911 0.99764 1.00334 1.18681 0.92288 0.92246 0.92246 1.19463 1.14924 0.94125 1.20366 0.91066 1.26571 0.99943 0.94098 0.96838 1.69736 1.37788 1.00347 1.37445 0.85431 0.78413 0.79336 0.78227 1.18641 1.18625 1.18601 1.20571 0.97591 0.91702 0.94051 1.20693 0.89659 1.02151 1.02810 1.21010 0.91791 0.98815 1.03377 1.20244 0.94471 0.93786 0.94474 1.21035 0.99538 0.92934 1.03141 0.85928 0.91582 0.90859 0.86680 0.91948 0.90366 0.91700 0.85646 0.86052 0.90031 0.90116 0.89433 0.93795 0.81700 0.90693 0.89368 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.91 16 2 O -0.37 -13.06 9.83 -56.14 -0.55 -13.61 16 3 C 0.51 18.79 7.82 70.34 0.55 19.34 16 4 O -0.52 -18.48 13.11 19.93 0.26 -18.22 16 5 C -0.16 -6.24 5.87 -20.13 -0.12 -6.36 16 6 C -0.03 -1.48 7.77 22.82 0.18 -1.30 16 7 C -0.03 -1.23 5.02 -20.08 -0.10 -1.33 16 8 C 0.02 1.05 5.31 42.47 0.23 1.28 16 9 N -0.46 -21.10 8.78 -171.13 -1.50 -22.60 16 10 C -0.01 -0.25 6.79 42.72 0.29 0.04 16 11 C -0.07 -2.23 10.15 71.23 0.72 -1.50 16 12 C -0.15 -6.75 9.64 22.10 0.21 -6.54 16 13 C -0.14 -7.09 8.72 22.66 0.20 -6.89 16 14 C 0.05 2.59 5.56 -21.02 -0.12 2.47 16 15 C -0.46 -23.74 7.02 23.36 0.16 -23.58 16 16 H 0.07 3.71 7.04 -2.91 -0.02 3.69 16 17 C 0.04 1.96 5.41 85.29 0.46 2.42 16 18 N -0.83 -41.44 10.65 21.85 0.23 -41.21 16 19 Si 0.96 38.19 29.56 68.60 2.03 40.22 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 C -0.04 -1.39 5.92 -19.54 -0.12 -1.51 16 24 C -0.10 -3.10 9.06 71.24 0.65 -2.45 16 25 C -0.13 -3.99 9.30 22.19 0.21 -3.78 16 26 C -0.03 -0.94 5.92 -19.53 -0.12 -1.06 16 27 C -0.11 -2.88 8.74 71.23 0.62 -2.26 16 28 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.12 5.51 7.01 -2.91 -0.02 5.49 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 34 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.12 6.35 6.23 -2.91 -0.02 6.34 16 37 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 40 H 0.04 1.67 6.55 -2.39 -0.02 1.65 16 41 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 1.73 8.04 -2.38 -0.02 1.71 16 44 H 0.08 2.23 5.80 -2.39 -0.01 2.21 16 Total: -1.00 -61.59 366.07 6.60 -54.99 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 1.02 Total: 31.52 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 5.11 Total: -31.10 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -1.27 Total: -63.80 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.29 Total: -31.83 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -61.59 6.60 -54.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245555336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.966 kcal (2) G-P(sol) polarization free energy of solvation -61.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds