Wall clock time and date at job start Tue Mar 31 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47201 * 2 1 4 4 C 1.34762 * 116.99986 * 180.02562 * 3 2 1 5 5 O 1.21501 * 119.99901 * 359.97438 * 4 3 2 6 6 C 1.47474 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.39502 * 120.22665 * 6.46795 * 6 4 3 8 8 C 1.38002 * 119.98320 * 180.02562 * 7 6 4 9 9 C 1.38580 * 120.46122 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.76891 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46850 * 90.00012 * 10 9 8 12 12 C 1.37968 * 120.46868 * 359.78824 * 9 8 7 13 13 C 1.39487 * 119.99451 * 0.46884 * 12 9 8 14 14 C 1.47749 * 120.22506 * 179.78975 * 13 12 9 15 15 C 1.40353 * 120.35369 * 57.71413 * 14 13 12 16 16 C 1.36675 * 118.59242 * 180.27709 * 15 14 13 17 17 C 1.40882 * 119.26357 * 359.97438 * 16 15 14 18 18 C 1.40958 * 119.67672 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99355 * 0.02691 * 18 17 16 20 20 C 1.40169 * 120.00518 * 180.02562 * 18 17 16 21 21 N 1.30678 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00291 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46908 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47014 * 120.00080 * 22 20 18 25 25 H 1.48502 * 109.47360 * 240.00350 * 22 20 18 26 26 N 1.33808 * 120.65179 * 0.02562 * 17 16 15 27 27 C 1.31148 * 121.52114 * 359.97438 * 26 17 16 28 28 H 1.09009 * 109.46969 * 60.00223 * 1 2 3 29 29 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47271 * 300.00126 * 1 2 3 31 31 H 1.09004 * 109.46806 * 239.99785 * 2 1 3 32 32 H 1.08997 * 109.47239 * 120.00384 * 2 1 3 33 33 H 1.07994 * 120.01336 * 0.04275 * 7 6 4 34 34 H 1.07995 * 119.76676 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.46921 * 209.99901 * 10 9 8 36 36 H 1.09003 * 109.46960 * 330.00247 * 10 9 8 37 37 H 1.08996 * 109.47023 * 60.00728 * 11 10 9 38 38 H 1.09004 * 109.46446 * 180.02562 * 11 10 9 39 39 H 1.08997 * 109.47268 * 299.99677 * 11 10 9 40 40 H 1.07995 * 120.00534 * 180.26010 * 12 9 8 41 41 H 1.07998 * 120.70295 * 0.24589 * 15 14 13 42 42 H 1.07996 * 120.36708 * 180.02562 * 16 15 14 43 43 H 0.96996 * 119.99702 * 179.97438 * 21 20 18 44 44 H 1.07999 * 119.66162 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9137 2.9082 -0.0011 7 6 3.0754 4.0150 0.1346 8 6 3.6082 5.2880 0.1329 9 6 4.9743 5.4777 -0.0026 10 6 5.5395 6.8747 -0.0019 11 6 5.8814 7.2858 1.4317 12 6 5.8212 4.3964 -0.1332 13 6 5.3028 3.1014 -0.1393 14 6 6.2046 1.9400 -0.2836 15 6 7.2490 1.7351 0.6313 16 6 8.0652 0.6521 0.4605 17 6 7.8344 -0.2203 -0.6214 18 6 8.6711 -1.3395 -0.8061 19 1 9.4840 -1.5250 -0.1197 20 6 8.4481 -2.2117 -1.8805 21 7 7.4648 -1.9869 -2.7113 22 14 9.5565 -3.6953 -2.1248 23 1 10.5867 -3.7249 -1.0557 24 1 8.7433 -4.9363 -2.0624 25 1 10.2203 -3.6045 -3.4501 26 7 6.8294 0.0037 -1.4760 27 6 6.0294 1.0338 -1.3388 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0098 3.8757 0.2413 34 1 2.9560 6.1424 0.2378 35 1 6.4418 6.9019 -0.6127 36 1 4.8022 7.5651 -0.4118 37 1 6.6186 6.5955 1.8415 38 1 6.2897 8.2964 1.4322 39 1 4.9790 7.2586 2.0425 40 1 6.8850 4.5526 -0.2341 41 1 7.4048 2.4189 1.4525 42 1 8.8774 0.4668 1.1477 43 1 7.3107 -2.5902 -3.4549 44 1 5.2279 1.1860 -2.0464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245785479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:56 Heat of formation + Delta-G solvation = -38.279697 kcal Electronic energy + Delta-G solvation = -26981.657873 eV Core-core repulsion = 23249.475038 eV Total energy + Delta-G solvation = -3732.182836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21585 -38.81074 -37.82718 -36.08007 -34.22254 -33.59925 -31.86009 -31.43081 -30.41092 -29.61539 -28.82709 -25.74420 -24.75019 -23.11216 -22.41066 -21.81331 -21.61782 -20.76072 -19.53962 -17.55373 -17.47805 -16.43859 -16.20415 -15.58062 -15.41084 -15.10950 -14.36464 -14.27261 -14.10821 -13.79865 -13.73986 -13.43130 -13.30871 -13.02193 -12.71295 -12.59281 -12.30084 -12.07472 -11.95779 -11.86297 -11.56673 -11.46909 -11.34563 -11.17048 -11.07080 -11.00581 -10.91518 -10.66997 -10.34257 -10.20766 -9.98327 -9.84791 -9.31525 -8.65275 -8.51887 -8.12217 -7.47987 -7.24783 -6.41409 -4.50386 1.06437 1.64332 2.75117 2.98836 3.03463 3.06969 3.11473 3.20398 3.24855 3.91341 4.13948 4.72216 4.79923 4.92893 5.02722 5.04300 5.15215 5.23231 5.29732 5.32978 5.41927 5.55682 5.61456 5.67196 5.82317 5.84233 5.84839 5.96126 5.97965 5.99444 6.11910 6.13802 6.17646 6.24466 6.36589 6.56529 6.68604 6.80166 6.82585 6.88460 6.99494 7.09834 7.19635 7.43994 7.63477 7.78563 8.06261 8.21484 8.35183 8.63649 8.94133 10.14600 10.29939 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.004127 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.789713 B = 6782.506712 C = 9007.671216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.494 3.506 5 O -0.462 6.462 6 C -0.143 4.143 7 C -0.058 4.058 8 C -0.160 4.160 9 C -0.049 4.049 10 C -0.087 4.087 11 C -0.146 4.146 12 C -0.136 4.136 13 C 0.090 3.910 14 C -0.281 4.281 15 C -0.029 4.029 16 C -0.280 4.280 17 C 0.261 3.739 18 C -0.419 4.419 19 H 0.085 0.915 20 C 0.066 3.934 21 N -0.703 5.703 22 Si 0.908 3.092 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.487 5.487 27 C 0.200 3.800 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.273 0.727 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.379 11.037 3.887 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.285 6.285 4 C 0.337 3.663 5 O -0.347 6.347 6 C -0.145 4.145 7 C -0.077 4.077 8 C -0.178 4.178 9 C -0.049 4.049 10 C -0.125 4.125 11 C -0.203 4.203 12 C -0.154 4.154 13 C 0.089 3.911 14 C -0.286 4.286 15 C -0.052 4.052 16 C -0.303 4.303 17 C 0.138 3.862 18 C -0.449 4.449 19 H 0.103 0.897 20 C -0.160 4.160 21 N -0.323 5.323 22 Si 0.732 3.268 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.197 1.197 26 N -0.199 5.199 27 C 0.031 3.969 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.328 9.963 3.019 13.978 hybrid contribution 0.425 -0.268 0.647 0.819 sum -8.902 9.695 3.666 13.663 Atomic orbital electron populations 1.21781 0.93110 1.02626 1.03101 1.22910 0.94705 0.80695 1.02774 1.86504 1.24886 1.31798 1.85319 1.21195 0.80168 0.90474 0.74484 1.91042 1.58996 1.41967 1.42711 1.19209 0.93742 0.89756 1.11755 1.21260 0.99398 0.91628 0.95385 1.20807 0.94489 0.96612 1.05926 1.20016 0.93556 0.95173 0.96150 1.20593 1.01117 0.92826 0.97921 1.21739 1.01809 1.00945 0.95849 1.21184 0.99796 0.90750 1.03704 1.18922 0.90363 0.93422 0.88435 1.18804 1.03382 1.01017 1.05398 1.20427 0.92972 0.96019 0.95816 1.21297 1.04546 1.00521 1.03915 1.18610 0.89455 0.91282 0.86888 1.19739 1.11262 1.05222 1.08682 0.89693 1.26160 0.95364 0.99151 0.95349 1.70138 1.22073 1.31678 1.08456 0.86267 0.80565 0.80734 0.79264 1.18299 1.19754 1.19716 1.68731 1.05686 1.17184 1.28252 1.22272 0.94008 0.88287 0.92317 0.91674 0.90533 0.91791 0.91176 0.91501 0.85326 0.86191 0.90852 0.91078 0.92329 0.92550 0.92585 0.85573 0.89011 0.88467 0.91535 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.90 6.20 37.16 0.23 1.13 16 3 O -0.37 -6.06 9.49 -40.66 -0.39 -6.44 16 4 C 0.49 9.68 7.59 34.49 0.26 9.95 16 5 O -0.46 -10.90 12.12 -19.27 -0.23 -11.14 16 6 C -0.14 -2.61 5.88 -104.65 -0.62 -3.22 16 7 C -0.06 -0.85 9.61 -39.20 -0.38 -1.23 16 8 C -0.16 -2.07 9.67 -39.54 -0.38 -2.45 16 9 C -0.05 -0.66 5.13 -104.59 -0.54 -1.19 16 10 C -0.09 -0.90 6.05 -27.88 -0.17 -1.06 16 11 C -0.15 -1.36 9.89 37.16 0.37 -0.99 16 12 C -0.14 -2.23 9.29 -39.22 -0.36 -2.59 16 13 C 0.09 1.75 5.43 -104.53 -0.57 1.18 16 14 C -0.28 -6.54 4.20 -104.48 -0.44 -6.98 16 15 C -0.03 -0.67 9.73 -39.35 -0.38 -1.06 16 16 C -0.28 -7.12 9.76 -39.15 -0.38 -7.50 16 17 C 0.26 7.35 6.55 -84.98 -0.56 6.80 16 18 C -0.42 -11.40 9.12 -37.83 -0.35 -11.75 16 19 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 20 C 0.07 1.71 5.50 -17.32 -0.10 1.62 16 21 N -0.70 -19.06 11.44 55.56 0.64 -18.43 16 22 Si 0.91 18.69 29.56 -169.99 -5.02 13.66 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 N -0.49 -13.98 7.83 -10.83 -0.08 -14.07 16 27 C 0.20 5.19 8.01 -17.11 -0.14 5.05 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.13 1.62 7.62 -52.49 -0.40 1.22 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.27 6.66 8.29 -40.82 -0.34 6.33 16 44 H 0.11 2.64 7.80 -52.49 -0.41 2.23 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -31.64 374.76 -9.82 -41.46 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.27 Total: 4.73 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -4.11 Total: -15.42 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.55 Total: -32.49 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.62 Total: -17.58 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.64 -9.82 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245785479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.180 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds