Wall clock time and date at job start Tue Mar 31 2020 14:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47201 * 2 1 4 4 C 1.34762 * 116.99986 * 180.02562 * 3 2 1 5 5 O 1.21501 * 119.99901 * 359.97438 * 4 3 2 6 6 C 1.47474 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.39502 * 120.22665 * 6.46795 * 6 4 3 8 8 C 1.38002 * 119.98320 * 180.02562 * 7 6 4 9 9 C 1.38580 * 120.46122 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.76891 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46850 * 90.00012 * 10 9 8 12 12 C 1.37968 * 120.46868 * 359.78824 * 9 8 7 13 13 C 1.39487 * 119.99451 * 0.46884 * 12 9 8 14 14 C 1.47749 * 120.22506 * 179.78975 * 13 12 9 15 15 C 1.40353 * 120.35369 * 57.71413 * 14 13 12 16 16 C 1.36675 * 118.59242 * 180.27709 * 15 14 13 17 17 C 1.40882 * 119.26357 * 359.97438 * 16 15 14 18 18 C 1.40958 * 119.67672 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99355 * 0.02691 * 18 17 16 20 20 C 1.40169 * 120.00518 * 180.02562 * 18 17 16 21 21 N 1.30678 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00291 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46908 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47014 * 120.00080 * 22 20 18 25 25 H 1.48502 * 109.47360 * 240.00350 * 22 20 18 26 26 N 1.33808 * 120.65179 * 0.02562 * 17 16 15 27 27 C 1.31148 * 121.52114 * 359.97438 * 26 17 16 28 28 H 1.09009 * 109.46969 * 60.00223 * 1 2 3 29 29 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47271 * 300.00126 * 1 2 3 31 31 H 1.09004 * 109.46806 * 239.99785 * 2 1 3 32 32 H 1.08997 * 109.47239 * 120.00384 * 2 1 3 33 33 H 1.07994 * 120.01336 * 0.04275 * 7 6 4 34 34 H 1.07995 * 119.76676 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.46921 * 209.99901 * 10 9 8 36 36 H 1.09003 * 109.46960 * 330.00247 * 10 9 8 37 37 H 1.08996 * 109.47023 * 60.00728 * 11 10 9 38 38 H 1.09004 * 109.46446 * 180.02562 * 11 10 9 39 39 H 1.08997 * 109.47268 * 299.99677 * 11 10 9 40 40 H 1.07995 * 120.00534 * 180.26010 * 12 9 8 41 41 H 1.07998 * 120.70295 * 0.24589 * 15 14 13 42 42 H 1.07996 * 120.36708 * 180.02562 * 16 15 14 43 43 H 0.96996 * 119.99702 * 179.97438 * 21 20 18 44 44 H 1.07999 * 119.66162 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9137 2.9082 -0.0011 7 6 3.0754 4.0150 0.1346 8 6 3.6082 5.2880 0.1329 9 6 4.9743 5.4777 -0.0026 10 6 5.5395 6.8747 -0.0019 11 6 5.8814 7.2858 1.4317 12 6 5.8212 4.3964 -0.1332 13 6 5.3028 3.1014 -0.1393 14 6 6.2046 1.9400 -0.2836 15 6 7.2490 1.7351 0.6313 16 6 8.0652 0.6521 0.4605 17 6 7.8344 -0.2203 -0.6214 18 6 8.6711 -1.3395 -0.8061 19 1 9.4840 -1.5250 -0.1197 20 6 8.4481 -2.2117 -1.8805 21 7 7.4648 -1.9869 -2.7113 22 14 9.5565 -3.6953 -2.1248 23 1 10.5867 -3.7249 -1.0557 24 1 8.7433 -4.9363 -2.0624 25 1 10.2203 -3.6045 -3.4501 26 7 6.8294 0.0037 -1.4760 27 6 6.0294 1.0338 -1.3388 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0098 3.8757 0.2413 34 1 2.9560 6.1424 0.2378 35 1 6.4418 6.9019 -0.6127 36 1 4.8022 7.5651 -0.4118 37 1 6.6186 6.5955 1.8415 38 1 6.2897 8.2964 1.4322 39 1 4.9790 7.2586 2.0425 40 1 6.8850 4.5526 -0.2341 41 1 7.4048 2.4189 1.4525 42 1 8.8774 0.4668 1.1477 43 1 7.3107 -2.5902 -3.4549 44 1 5.2279 1.1860 -2.0464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245785479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:55 Heat of formation + Delta-G solvation = -54.345162 kcal Electronic energy + Delta-G solvation = -26982.354524 eV Core-core repulsion = 23249.475038 eV Total energy + Delta-G solvation = -3732.879487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68888 -40.27559 -39.53900 -37.57265 -35.75438 -35.03857 -33.38176 -32.59528 -32.34029 -30.82456 -30.40015 -27.52663 -25.93413 -24.28995 -23.88647 -23.64035 -22.84314 -22.32237 -20.94854 -19.43746 -18.93920 -17.86568 -17.69738 -17.35074 -16.72589 -16.38750 -16.02967 -15.89954 -15.50121 -15.15839 -15.06757 -14.51749 -14.41832 -14.37514 -14.19358 -13.88509 -13.76634 -13.60161 -13.41585 -12.99118 -12.92817 -12.92122 -12.72835 -12.58561 -12.56079 -12.47607 -12.04105 -11.96979 -11.78758 -11.61304 -11.52303 -11.51391 -11.11279 -10.24530 -9.94069 -9.76888 -9.44602 -9.09309 -8.32791 -6.51510 -0.28166 0.34364 0.96808 1.22118 1.36718 1.50890 1.53755 1.63390 1.69630 2.19178 2.76744 2.88292 3.70564 3.86583 3.89223 3.90916 3.96132 4.05818 4.09326 4.12727 4.29463 4.32065 4.37018 4.43775 4.55735 4.59199 4.69399 4.80187 4.86731 4.90349 4.92137 5.00837 5.06423 5.11637 5.13952 5.15438 5.19564 5.33318 5.40450 5.45066 5.47145 5.54555 5.64828 5.73295 5.86538 6.01954 6.10966 6.24337 6.68833 6.85928 6.93720 8.18043 8.40356 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.004127 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.789713 B = 6782.506712 C = 9007.671216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 O -0.355 6.355 4 C 0.492 3.508 5 O -0.516 6.516 6 C -0.162 4.162 7 C -0.050 4.050 8 C -0.139 4.139 9 C -0.037 4.037 10 C -0.086 4.086 11 C -0.145 4.145 12 C -0.140 4.140 13 C 0.052 3.948 14 C -0.257 4.257 15 C -0.035 4.035 16 C -0.296 4.296 17 C 0.226 3.774 18 C -0.461 4.461 19 H 0.092 0.908 20 C 0.020 3.980 21 N -0.752 5.752 22 Si 0.993 3.007 23 H -0.251 1.251 24 H -0.267 1.267 25 H -0.262 1.262 26 N -0.521 5.521 27 C 0.179 3.821 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.279 0.721 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 14.084 4.845 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 O -0.273 6.273 4 C 0.338 3.662 5 O -0.405 6.405 6 C -0.163 4.163 7 C -0.068 4.068 8 C -0.157 4.157 9 C -0.037 4.037 10 C -0.123 4.123 11 C -0.202 4.202 12 C -0.158 4.158 13 C 0.051 3.949 14 C -0.261 4.261 15 C -0.059 4.059 16 C -0.318 4.318 17 C 0.102 3.898 18 C -0.491 4.491 19 H 0.110 0.890 20 C -0.202 4.202 21 N -0.374 5.374 22 Si 0.812 3.188 23 H -0.174 1.174 24 H -0.192 1.192 25 H -0.187 1.187 26 N -0.234 5.234 27 C 0.012 3.988 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.996 13.065 3.986 17.535 hybrid contribution 0.688 -0.886 0.431 1.202 sum -10.308 12.179 4.417 16.556 Atomic orbital electron populations 1.21784 0.89159 1.04374 1.04104 1.23196 0.97663 0.79509 1.01516 1.86499 1.23171 1.33061 1.84571 1.21670 0.80750 0.90757 0.73023 1.91031 1.60295 1.43704 1.45459 1.19282 0.93633 0.90102 1.13309 1.21551 1.00184 0.91094 0.94012 1.21337 0.94682 0.97153 1.02513 1.20425 0.93687 0.96002 0.93552 1.20699 1.01917 0.90864 0.98836 1.21740 1.01821 1.01709 0.94976 1.21224 1.00421 0.90312 1.03840 1.18847 0.90611 0.93258 0.92183 1.19074 1.02838 1.01035 1.03200 1.20784 0.92645 0.95921 0.96546 1.21504 1.05626 1.00972 1.03730 1.19069 0.90046 0.92670 0.88018 1.20074 1.12285 1.06392 1.10372 0.89002 1.27153 0.96684 1.02081 0.94272 1.70255 1.24238 1.33445 1.09419 0.85020 0.78247 0.76021 0.79531 1.17388 1.19160 1.18697 1.68616 1.06609 1.18714 1.29466 1.22302 0.93884 0.89099 0.93534 0.90849 0.88431 0.90493 0.93006 0.92437 0.82843 0.81688 0.90647 0.88373 0.93753 0.90607 0.92004 0.85599 0.85926 0.87149 0.91014 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.29 71.98 0.74 -1.80 16 2 C 0.05 1.60 6.20 71.98 0.45 2.05 16 3 O -0.36 -11.74 9.49 -56.73 -0.54 -12.28 16 4 C 0.49 19.91 7.59 70.26 0.53 20.44 16 5 O -0.52 -25.97 12.12 19.83 0.24 -25.73 16 6 C -0.16 -5.82 5.88 -19.88 -0.12 -5.93 16 7 C -0.05 -1.30 9.61 22.52 0.22 -1.09 16 8 C -0.14 -2.89 9.67 22.30 0.22 -2.67 16 9 C -0.04 -0.84 5.13 -19.85 -0.10 -0.95 16 10 C -0.09 -1.37 6.05 29.85 0.18 -1.18 16 11 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16 12 C -0.14 -4.37 9.29 22.51 0.21 -4.16 16 13 C 0.05 2.04 5.43 -19.80 -0.11 1.94 16 14 C -0.26 -12.47 4.20 -19.77 -0.08 -12.55 16 15 C -0.04 -1.71 9.73 22.42 0.22 -1.49 16 16 C -0.30 -15.79 9.76 22.55 0.22 -15.57 16 17 C 0.23 13.59 6.55 40.16 0.26 13.85 16 18 C -0.46 -26.58 9.12 23.41 0.21 -26.37 16 19 H 0.09 4.91 7.85 -2.91 -0.02 4.88 16 20 C 0.02 1.08 5.50 85.33 0.47 1.55 16 21 N -0.75 -43.36 11.44 21.86 0.25 -43.11 16 22 Si 0.99 39.84 29.56 68.60 2.03 41.87 16 23 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 24 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 N -0.52 -32.20 7.83 -188.18 -1.47 -33.67 16 27 C 0.18 9.93 8.01 85.27 0.68 10.61 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.15 3.21 7.62 -2.91 -0.02 3.19 16 34 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 36 H 0.10 1.11 8.08 -2.39 -0.02 1.09 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 41 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.11 5.38 8.06 -2.91 -0.02 5.36 16 43 H 0.28 14.44 8.29 -92.71 -0.77 13.67 16 44 H 0.10 5.34 7.80 -2.91 -0.02 5.32 16 Total: -1.00 -76.56 374.76 6.41 -70.15 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 1.00 Total: 27.47 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.91 Total: -24.70 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.22 Total: -76.78 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.30 Total: -38.01 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -76.56 6.41 -70.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245785479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.804 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds