Wall clock time and date at job start Tue Mar 31 2020 14:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47242 * 2 1 4 4 C 1.34756 * 116.99941 * 179.97438 * 3 2 1 5 5 O 1.21501 * 120.00304 * 0.02562 * 4 3 2 6 6 C 1.47455 * 119.99959 * 179.97438 * 4 3 2 7 7 C 1.39504 * 120.23237 * 0.02562 * 6 4 3 8 8 C 1.37987 * 119.99368 * 179.69605 * 7 6 4 9 9 C 1.38607 * 120.47137 * 0.27516 * 8 7 6 10 10 C 1.50698 * 119.76263 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46814 * 90.00468 * 10 9 8 12 12 C 1.37943 * 120.47131 * 0.02562 * 9 8 7 13 13 C 1.39535 * 119.99465 * 359.97438 * 12 9 8 14 14 C 1.47612 * 120.23519 * 179.97438 * 13 12 9 15 15 C 1.39413 * 120.79247 * 64.71614 * 14 13 12 16 16 N 1.31639 * 120.65469 * 179.75518 * 15 14 13 17 17 C 1.32219 * 122.51289 * 0.53981 * 16 15 14 18 18 C 1.36505 * 121.53165 * 359.72702 * 17 16 15 19 19 C 1.41119 * 119.10875 * 359.97438 * 18 17 16 20 20 C 1.40885 * 121.11170 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99923 * 203.17172 * 20 19 18 22 22 C 1.40251 * 120.00122 * 23.16955 * 20 19 18 23 23 N 1.30636 * 119.99628 * 17.23624 * 22 20 19 24 24 Si 1.86803 * 120.00084 * 197.23173 * 22 20 19 25 25 H 1.48496 * 109.46744 * 60.00329 * 24 22 20 26 26 H 1.48496 * 109.47021 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47177 * 300.00411 * 24 22 20 28 28 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46949 * 299.99771 * 1 2 3 30 30 H 1.08995 * 109.46974 * 59.99975 * 1 2 3 31 31 H 1.09005 * 109.46949 * 240.00229 * 2 1 3 32 32 H 1.09000 * 109.46896 * 120.00492 * 2 1 3 33 33 H 1.08001 * 120.00237 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.76624 * 180.30109 * 8 7 6 35 35 H 1.09001 * 109.46936 * 210.00278 * 10 9 8 36 36 H 1.08987 * 109.47381 * 330.00360 * 10 9 8 37 37 H 1.08996 * 109.47033 * 179.97438 * 11 10 9 38 38 H 1.08995 * 109.46676 * 300.00060 * 11 10 9 39 39 H 1.09000 * 109.47011 * 59.99901 * 11 10 9 40 40 H 1.08004 * 120.00381 * 180.02562 * 12 9 8 41 41 H 1.08002 * 119.66972 * 0.02562 * 15 14 13 42 42 H 1.08006 * 119.23587 * 179.73950 * 17 16 15 43 43 H 1.08001 * 120.44770 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99816 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0902 0.5819 0.0005 6 6 3.9137 2.9080 0.0000 7 6 3.0684 4.0178 -0.0005 8 6 3.6011 5.2907 0.0053 9 6 4.9745 5.4779 0.0060 10 6 5.5391 6.8751 0.0118 11 6 5.7303 7.3418 1.4564 12 6 5.8282 4.3943 0.0003 13 6 5.3106 3.0985 -0.0057 14 6 6.2192 1.9352 -0.0123 15 6 7.0627 1.6822 1.0685 16 7 7.8684 0.6413 1.0617 17 6 7.9313 -0.2022 0.0455 18 6 7.1520 -0.0427 -1.0639 19 6 6.2590 1.0483 -1.1244 20 6 5.4347 1.2528 -2.2486 21 1 5.0494 2.2386 -2.4634 22 6 5.1147 0.1763 -3.0887 23 7 5.2825 -1.0501 -2.6713 24 14 4.4483 0.4964 -4.8042 25 1 5.4427 1.2765 -5.5838 26 1 4.1906 -0.7982 -5.4845 27 1 3.1815 1.2652 -4.7077 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.9971 3.8807 -0.0010 34 1 2.9433 6.1472 0.0098 35 1 6.5003 6.8807 -0.5021 36 1 4.8501 7.5475 -0.4990 37 1 6.1391 8.3522 1.4606 38 1 4.7691 7.3361 1.9702 39 1 6.4194 6.6693 1.9672 40 1 6.8971 4.5489 0.0013 41 1 7.0517 2.3444 1.9216 42 1 8.6150 -1.0369 0.0942 43 1 7.2173 -0.7426 -1.8838 44 1 5.0607 -1.7947 -3.2522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245785575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:17 Heat of formation + Delta-G solvation = -42.659028 kcal Electronic energy + Delta-G solvation = -28143.177502 eV Core-core repulsion = 24410.804764 eV Total energy + Delta-G solvation = -3732.372738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.92522 -38.60203 -37.84960 -35.69654 -34.10689 -33.91018 -31.94410 -31.25863 -30.20286 -29.38278 -28.31755 -25.95798 -24.61327 -23.04251 -22.59298 -21.52461 -21.40171 -20.62455 -19.31486 -17.56435 -17.21992 -16.11751 -15.83798 -15.55147 -15.17827 -15.00470 -14.45610 -14.31793 -14.08375 -13.67094 -13.49707 -13.31501 -13.14748 -12.81960 -12.64378 -12.51227 -12.31441 -12.06722 -12.03500 -11.69873 -11.42422 -11.35442 -11.26571 -11.20590 -11.07342 -11.01612 -10.76506 -10.62622 -10.32375 -9.95791 -9.83837 -9.54785 -9.20127 -8.46294 -8.28643 -7.83883 -7.70528 -7.33282 -6.81768 -4.53487 1.33646 1.82962 2.77349 2.89768 2.97735 3.01353 3.28315 3.36027 3.46265 3.82957 4.39149 4.67577 4.92816 5.05823 5.24183 5.24925 5.36321 5.38507 5.44547 5.46911 5.62599 5.66679 5.69754 5.80509 5.87277 5.90701 5.97294 6.01436 6.06087 6.13236 6.16620 6.23899 6.34087 6.42995 6.55474 6.75160 6.89630 6.92118 6.99819 7.00878 7.20664 7.30033 7.38145 7.42854 7.58315 7.87216 8.14830 8.48213 8.75384 8.78598 8.82166 9.71627 10.05315 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.006062 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.372633 B = 4617.866900 C = 5562.637129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 O -0.372 6.372 4 C 0.486 3.514 5 O -0.431 6.431 6 C -0.113 4.113 7 C -0.068 4.068 8 C -0.155 4.155 9 C -0.057 4.057 10 C -0.085 4.085 11 C -0.146 4.146 12 C -0.133 4.133 13 C 0.089 3.911 14 C -0.234 4.234 15 C 0.130 3.870 16 N -0.582 5.582 17 C 0.082 3.918 18 C -0.209 4.209 19 C 0.183 3.817 20 C -0.437 4.437 21 H 0.076 0.924 22 C 0.083 3.917 23 N -0.762 5.762 24 Si 0.898 3.102 25 H -0.261 1.261 26 H -0.276 1.276 27 H -0.264 1.264 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 8.784 1.884 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 O -0.291 6.291 4 C 0.327 3.673 5 O -0.313 6.313 6 C -0.115 4.115 7 C -0.087 4.087 8 C -0.173 4.173 9 C -0.057 4.057 10 C -0.123 4.123 11 C -0.203 4.203 12 C -0.151 4.151 13 C 0.088 3.912 14 C -0.240 4.240 15 C -0.028 4.028 16 N -0.296 5.296 17 C -0.066 4.066 18 C -0.231 4.231 19 C 0.175 3.825 20 C -0.467 4.467 21 H 0.094 0.906 22 C -0.139 4.139 23 N -0.386 5.386 24 Si 0.722 3.278 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.188 1.188 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.085 7.959 2.533 10.334 hybrid contribution -1.075 -0.114 -1.666 1.986 sum -7.160 7.845 0.867 10.657 Atomic orbital electron populations 1.21772 0.93571 1.02304 1.02907 1.22789 0.94226 0.81192 1.02510 1.86461 1.25388 1.31275 1.86023 1.20940 0.80039 0.90482 0.75859 1.91052 1.58656 1.41418 1.40132 1.19212 0.93238 0.89976 1.09035 1.21274 0.99521 0.91719 0.96139 1.20792 0.94326 0.96551 1.05620 1.19928 0.93502 0.94989 0.97294 1.20561 1.01202 0.92861 0.97652 1.21739 1.02002 1.00632 0.95924 1.21147 0.99536 0.90818 1.03583 1.18709 0.90525 0.92959 0.89012 1.19262 1.05033 1.01136 0.98574 1.21900 0.91623 0.94081 0.95153 1.67257 1.25898 1.06728 1.29740 1.21635 0.97714 0.96566 0.90670 1.21846 0.99046 1.02265 0.99933 1.17382 0.87636 0.88035 0.89412 1.19416 1.25286 0.95452 1.06590 0.90631 1.25932 0.93935 0.94503 0.99485 1.69773 1.33506 0.99487 1.35786 0.86519 0.80415 0.78910 0.82004 1.18488 1.20061 1.18810 0.90833 0.91935 0.91840 0.91326 0.91913 0.85474 0.86396 0.90995 0.91225 0.92705 0.92608 0.92343 0.85792 0.86678 0.86850 0.85872 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.29 37.16 0.38 -1.43 16 2 C 0.07 1.13 6.20 37.16 0.23 1.36 16 3 O -0.37 -7.16 9.47 -40.64 -0.38 -7.54 16 4 C 0.49 10.78 7.17 34.49 0.25 11.02 16 5 O -0.43 -11.05 11.71 -19.27 -0.23 -11.28 16 6 C -0.11 -2.32 5.39 -104.63 -0.56 -2.88 16 7 C -0.07 -1.14 9.61 -39.20 -0.38 -1.52 16 8 C -0.15 -2.26 9.67 -39.54 -0.38 -2.64 16 9 C -0.06 -0.85 5.13 -104.59 -0.54 -1.39 16 10 C -0.09 -0.98 6.05 -27.88 -0.17 -1.14 16 11 C -0.15 -1.48 9.90 37.16 0.37 -1.11 16 12 C -0.13 -2.36 9.38 -39.21 -0.37 -2.73 16 13 C 0.09 1.89 4.49 -104.55 -0.47 1.42 16 14 C -0.23 -5.68 3.96 -104.07 -0.41 -6.09 16 15 C 0.13 3.13 10.92 -17.20 -0.19 2.94 16 16 N -0.58 -14.66 10.31 -13.34 -0.14 -14.80 16 17 C 0.08 2.04 11.09 -18.01 -0.20 1.84 16 18 C -0.21 -5.48 8.74 -39.11 -0.34 -5.83 16 19 C 0.18 4.80 3.85 -106.24 -0.41 4.39 16 20 C -0.44 -11.26 6.53 -37.82 -0.25 -11.51 16 21 H 0.08 1.95 7.15 -52.48 -0.38 1.57 16 22 C 0.08 2.04 5.20 -17.30 -0.09 1.95 16 23 N -0.76 -19.16 10.90 55.56 0.61 -18.55 16 24 Si 0.90 18.42 29.60 -169.99 -5.03 13.39 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.13 1.90 7.61 -52.49 -0.40 1.50 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.07 0.70 8.08 -51.94 -0.42 0.28 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 41 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 42 H 0.11 2.53 8.06 -52.48 -0.42 2.11 16 43 H 0.12 3.28 6.16 -52.49 -0.32 2.95 16 44 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -29.89 369.60 -9.27 -39.16 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.14 Total: 7.39 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.53 Total: -13.35 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.47 Total: -33.35 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.61 Total: -18.82 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.89 -9.27 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245785575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.499 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds