Wall clock time and date at job start Tue Mar 31 2020 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47242 * 2 1 4 4 C 1.34756 * 116.99941 * 179.97438 * 3 2 1 5 5 O 1.21501 * 120.00304 * 0.02562 * 4 3 2 6 6 C 1.47455 * 119.99959 * 179.97438 * 4 3 2 7 7 C 1.39504 * 120.23237 * 0.02562 * 6 4 3 8 8 C 1.37987 * 119.99368 * 179.69605 * 7 6 4 9 9 C 1.38607 * 120.47137 * 0.27516 * 8 7 6 10 10 C 1.50698 * 119.76263 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46814 * 90.00468 * 10 9 8 12 12 C 1.37943 * 120.47131 * 0.02562 * 9 8 7 13 13 C 1.39535 * 119.99465 * 359.97438 * 12 9 8 14 14 C 1.47612 * 120.23519 * 179.97438 * 13 12 9 15 15 C 1.39413 * 120.79247 * 64.71614 * 14 13 12 16 16 N 1.31639 * 120.65469 * 179.75518 * 15 14 13 17 17 C 1.32219 * 122.51289 * 0.53981 * 16 15 14 18 18 C 1.36505 * 121.53165 * 359.72702 * 17 16 15 19 19 C 1.41119 * 119.10875 * 359.97438 * 18 17 16 20 20 C 1.40885 * 121.11170 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99923 * 203.17172 * 20 19 18 22 22 C 1.40251 * 120.00122 * 23.16955 * 20 19 18 23 23 N 1.30636 * 119.99628 * 17.23624 * 22 20 19 24 24 Si 1.86803 * 120.00084 * 197.23173 * 22 20 19 25 25 H 1.48496 * 109.46744 * 60.00329 * 24 22 20 26 26 H 1.48496 * 109.47021 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47177 * 300.00411 * 24 22 20 28 28 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46949 * 299.99771 * 1 2 3 30 30 H 1.08995 * 109.46974 * 59.99975 * 1 2 3 31 31 H 1.09005 * 109.46949 * 240.00229 * 2 1 3 32 32 H 1.09000 * 109.46896 * 120.00492 * 2 1 3 33 33 H 1.08001 * 120.00237 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.76624 * 180.30109 * 8 7 6 35 35 H 1.09001 * 109.46936 * 210.00278 * 10 9 8 36 36 H 1.08987 * 109.47381 * 330.00360 * 10 9 8 37 37 H 1.08996 * 109.47033 * 179.97438 * 11 10 9 38 38 H 1.08995 * 109.46676 * 300.00060 * 11 10 9 39 39 H 1.09000 * 109.47011 * 59.99901 * 11 10 9 40 40 H 1.08004 * 120.00381 * 180.02562 * 12 9 8 41 41 H 1.08002 * 119.66972 * 0.02562 * 15 14 13 42 42 H 1.08006 * 119.23587 * 179.73950 * 17 16 15 43 43 H 1.08001 * 120.44770 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99816 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0902 0.5819 0.0005 6 6 3.9137 2.9080 0.0000 7 6 3.0684 4.0178 -0.0005 8 6 3.6011 5.2907 0.0053 9 6 4.9745 5.4779 0.0060 10 6 5.5391 6.8751 0.0118 11 6 5.7303 7.3418 1.4564 12 6 5.8282 4.3943 0.0003 13 6 5.3106 3.0985 -0.0057 14 6 6.2192 1.9352 -0.0123 15 6 7.0627 1.6822 1.0685 16 7 7.8684 0.6413 1.0617 17 6 7.9313 -0.2022 0.0455 18 6 7.1520 -0.0427 -1.0639 19 6 6.2590 1.0483 -1.1244 20 6 5.4347 1.2528 -2.2486 21 1 5.0494 2.2386 -2.4634 22 6 5.1147 0.1763 -3.0887 23 7 5.2825 -1.0501 -2.6713 24 14 4.4483 0.4964 -4.8042 25 1 5.4427 1.2765 -5.5838 26 1 4.1906 -0.7982 -5.4845 27 1 3.1815 1.2652 -4.7077 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.9971 3.8807 -0.0010 34 1 2.9433 6.1472 0.0098 35 1 6.5003 6.8807 -0.5021 36 1 4.8501 7.5475 -0.4990 37 1 6.1391 8.3522 1.4606 38 1 4.7691 7.3361 1.9702 39 1 6.4194 6.6693 1.9672 40 1 6.8971 4.5489 0.0013 41 1 7.0517 2.3444 1.9216 42 1 8.6150 -1.0369 0.0942 43 1 7.2173 -0.7426 -1.8838 44 1 5.0607 -1.7947 -3.2522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245785575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:16 Heat of formation + Delta-G solvation = -56.992995 kcal Electronic energy + Delta-G solvation = -28143.799069 eV Core-core repulsion = 24410.804764 eV Total energy + Delta-G solvation = -3732.994305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50937 -40.21558 -39.47627 -37.32065 -35.97543 -35.12730 -33.49347 -32.51575 -32.05608 -30.63963 -29.94638 -27.83717 -25.88256 -24.47007 -23.94411 -23.30255 -22.75786 -22.22989 -20.80027 -19.45468 -18.74428 -17.69346 -17.41858 -17.30827 -16.61262 -16.39954 -16.20434 -15.99451 -15.42546 -15.07268 -14.94153 -14.51102 -14.40837 -14.30118 -14.11097 -14.03633 -13.83783 -13.56025 -13.28813 -13.19028 -13.12407 -12.85865 -12.78322 -12.50337 -12.41896 -12.28098 -12.05233 -11.91774 -11.81650 -11.59034 -11.43495 -11.28083 -10.99429 -10.04809 -9.74047 -9.68653 -9.56392 -9.12281 -8.65515 -6.46786 -0.10583 0.42466 1.00980 1.04653 1.29182 1.39319 1.53576 1.83901 1.91799 2.11307 2.77774 2.95167 3.72283 3.84648 3.93898 3.97807 3.99792 4.07144 4.12417 4.16823 4.35954 4.36427 4.47637 4.52875 4.59761 4.64345 4.74840 4.84873 4.91734 5.00703 5.05020 5.07630 5.10829 5.14289 5.16312 5.22189 5.28177 5.39173 5.47503 5.51445 5.54044 5.62691 5.70300 5.77641 5.93091 6.08111 6.23363 6.54984 6.83948 6.90334 7.14515 7.76784 8.23875 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.006062 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.372633 B = 4617.866900 C = 5562.637129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.482 3.518 5 O -0.479 6.479 6 C -0.142 4.142 7 C -0.064 4.064 8 C -0.139 4.139 9 C -0.043 4.043 10 C -0.084 4.084 11 C -0.144 4.144 12 C -0.140 4.140 13 C 0.056 3.944 14 C -0.227 4.227 15 C 0.112 3.888 16 N -0.595 5.595 17 C 0.074 3.926 18 C -0.235 4.235 19 C 0.162 3.838 20 C -0.452 4.452 21 H 0.067 0.933 22 C 0.045 3.955 23 N -0.791 5.791 24 Si 0.963 3.037 25 H -0.255 1.255 26 H -0.263 1.263 27 H -0.262 1.262 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.111 0.889 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 11.983 1.488 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.326 3.674 5 O -0.365 6.365 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.156 4.156 9 C -0.043 4.043 10 C -0.121 4.121 11 C -0.201 4.201 12 C -0.158 4.158 13 C 0.055 3.945 14 C -0.232 4.232 15 C -0.044 4.044 16 N -0.310 5.310 17 C -0.074 4.074 18 C -0.257 4.257 19 C 0.154 3.846 20 C -0.482 4.482 21 H 0.086 0.914 22 C -0.174 4.174 23 N -0.415 5.415 24 Si 0.783 3.217 25 H -0.179 1.179 26 H -0.187 1.187 27 H -0.186 1.186 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.129 0.871 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.299 11.187 2.161 14.096 hybrid contribution -0.457 -0.999 -1.450 1.820 sum -8.757 10.188 0.711 13.453 Atomic orbital electron populations 1.21769 0.89371 1.04225 1.03914 1.23039 0.97377 0.79957 1.00921 1.86459 1.23979 1.32574 1.85432 1.21475 0.80543 0.90970 0.74462 1.91030 1.59756 1.42972 1.42712 1.19304 0.93443 0.90197 1.11360 1.21534 1.00113 0.91468 0.95097 1.21286 0.94708 0.96921 1.02701 1.20360 0.93545 0.95991 0.94421 1.20667 1.01845 0.90698 0.98898 1.21731 1.02158 1.01494 0.94727 1.21223 1.00221 0.90423 1.03958 1.18729 0.90638 0.93154 0.91969 1.19571 1.04561 1.01548 0.97551 1.22298 0.91793 0.94272 0.96033 1.67289 1.26702 1.07264 1.29736 1.21919 0.97919 0.97176 0.90417 1.21852 1.00490 1.03052 1.00351 1.17701 0.87877 0.88611 0.90437 1.19430 1.25913 0.95447 1.07401 0.91442 1.26704 0.93913 0.93951 1.02833 1.69833 1.34170 1.00334 1.37143 0.85543 0.79671 0.79256 0.77220 1.17941 1.18702 1.18599 0.88465 0.90457 0.91190 0.93846 0.92762 0.83506 0.81974 0.90724 0.88640 0.90574 0.92079 0.93660 0.85683 0.84547 0.84897 0.87087 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 10.29 71.98 0.74 -2.33 16 2 C 0.06 2.09 6.20 71.98 0.45 2.54 16 3 O -0.37 -14.18 9.47 -56.66 -0.54 -14.72 16 4 C 0.48 22.06 7.17 70.25 0.50 22.57 16 5 O -0.48 -25.97 11.71 19.83 0.23 -25.74 16 6 C -0.14 -5.82 5.39 -19.87 -0.11 -5.93 16 7 C -0.06 -2.00 9.61 22.52 0.22 -1.78 16 8 C -0.14 -3.47 9.67 22.30 0.22 -3.26 16 9 C -0.04 -1.15 5.13 -19.85 -0.10 -1.25 16 10 C -0.08 -1.56 6.05 29.85 0.18 -1.38 16 11 C -0.14 -2.36 9.90 71.98 0.71 -1.65 16 12 C -0.14 -4.88 9.38 22.51 0.21 -4.66 16 13 C 0.06 2.42 4.49 -19.82 -0.09 2.33 16 14 C -0.23 -11.46 3.96 -19.51 -0.08 -11.54 16 15 C 0.11 5.59 10.92 85.00 0.93 6.51 16 16 N -0.59 -31.09 10.31 -196.11 -2.02 -33.12 16 17 C 0.07 3.88 11.09 84.23 0.93 4.81 16 18 C -0.23 -13.07 8.74 22.57 0.20 -12.87 16 19 C 0.16 8.90 3.85 -20.91 -0.08 8.82 16 20 C -0.45 -24.24 6.53 23.41 0.15 -24.09 16 21 H 0.07 3.61 7.15 -2.91 -0.02 3.59 16 22 C 0.05 2.29 5.20 85.36 0.44 2.73 16 23 N -0.79 -41.53 10.90 21.88 0.24 -41.29 16 24 Si 0.96 38.24 29.60 68.60 2.03 40.27 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.15 3.93 7.61 -2.91 -0.02 3.91 16 34 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.07 1.39 8.08 -2.39 -0.02 1.38 16 36 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.14 5.99 8.06 -2.91 -0.02 5.96 16 42 H 0.13 6.20 8.06 -2.91 -0.02 6.17 16 43 H 0.11 6.30 6.16 -2.91 -0.02 6.29 16 44 H 0.29 13.73 8.29 -92.71 -0.77 12.96 16 Total: -1.00 -69.66 369.60 6.37 -63.29 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 1.00 Total: 31.74 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.43 Total: -20.43 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.78 Total: -74.41 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.30 Total: -40.46 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -69.66 6.37 -63.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245785575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.295 kcal (2) G-P(sol) polarization free energy of solvation -69.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds