Wall clock time and date at job start Tue Mar 31 2020 14:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45204 * 109.47173 * 2 1 4 4 C 1.34741 * 117.00354 * 179.97438 * 3 2 1 5 5 O 1.21493 * 119.99697 * 0.02562 * 4 3 2 6 6 C 1.47553 * 120.00197 * 180.02562 * 4 3 2 7 7 C 1.39526 * 120.21082 * 54.35946 * 6 4 3 8 8 C 1.37956 * 119.96349 * 179.97438 * 7 6 4 9 9 C 1.38505 * 120.40526 * 0.07043 * 8 7 6 10 10 C 1.50697 * 119.78158 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47315 * 270.01838 * 10 9 8 12 12 C 1.38072 * 120.43352 * 359.97438 * 9 8 7 13 13 C 1.39176 * 120.02324 * 359.97438 * 12 9 8 14 14 C 1.48211 * 120.20008 * 179.75208 * 13 12 9 15 15 C 1.38950 * 119.61918 * 6.34090 * 14 13 12 16 16 C 1.40864 * 118.75887 * 179.97438 * 15 14 13 17 17 C 1.41518 * 120.98793 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00003 * 25.87044 * 17 16 15 19 19 C 1.40060 * 119.99862 * 205.87129 * 17 16 15 20 20 N 1.30730 * 119.99733 * 14.81874 * 19 17 16 21 21 Si 1.86795 * 119.99710 * 194.81307 * 19 17 16 22 22 H 1.48503 * 109.46852 * 90.00588 * 21 19 17 23 23 H 1.48507 * 109.47112 * 210.00016 * 21 19 17 24 24 H 1.48500 * 109.47415 * 330.00494 * 21 19 17 25 25 C 1.41131 * 118.02536 * 359.97438 * 16 15 14 26 26 C 1.37806 * 119.08029 * 0.02562 * 25 16 15 27 27 N 1.31869 * 121.15906 * 359.74027 * 26 25 16 28 28 H 1.08997 * 109.47029 * 299.99435 * 1 2 3 29 29 H 1.09000 * 109.47147 * 60.00053 * 1 2 3 30 30 H 1.08997 * 109.46649 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47424 * 240.00105 * 2 1 3 32 32 H 1.08997 * 109.47476 * 120.00361 * 2 1 3 33 33 H 1.07998 * 120.01773 * 0.04559 * 7 6 4 34 34 H 1.08000 * 119.79946 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.47577 * 30.02237 * 10 9 8 36 36 H 1.09001 * 109.47086 * 150.02277 * 10 9 8 37 37 H 1.08996 * 109.47339 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.47360 * 300.00867 * 11 10 9 39 39 H 1.09008 * 109.46626 * 60.00546 * 11 10 9 40 40 H 1.07997 * 119.98936 * 180.02562 * 12 9 8 41 41 H 1.08004 * 120.61836 * 359.96165 * 15 14 13 42 42 H 0.97001 * 119.99695 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.45940 * 179.97438 * 25 16 15 44 44 H 1.07999 * 119.42105 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3498 1.5456 0.0005 5 8 4.0899 0.5821 0.0005 6 6 3.9138 2.9091 0.0011 7 6 3.5325 3.8261 0.9812 8 6 4.0634 5.0994 0.9772 9 6 4.9738 5.4763 0.0039 10 6 5.5444 6.8710 0.0125 11 6 4.6537 7.7918 -0.8240 12 6 5.3620 4.5825 -0.9743 13 6 4.8385 3.2930 -0.9867 14 6 5.2483 2.3321 -2.0381 15 6 6.2544 2.6793 -2.9314 16 6 6.6299 1.7521 -3.9231 17 6 7.6483 2.0568 -4.8573 18 1 8.4179 2.7707 -4.6035 19 6 7.6581 1.4326 -6.1111 20 7 6.5947 0.8014 -6.5352 21 14 9.1904 1.5021 -7.1770 22 1 10.0614 0.3397 -6.8681 23 1 8.7995 1.4609 -8.6091 24 1 9.9285 2.7609 -6.9014 25 6 5.9604 0.5102 -3.9574 26 6 4.9744 0.2550 -3.0290 27 7 4.6533 1.1467 -2.1121 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.8230 3.5389 1.7431 34 1 3.7667 5.8070 1.7373 35 1 5.5872 7.2398 1.0374 36 1 6.5490 6.8552 -0.4101 37 1 5.0667 8.8004 -0.8181 38 1 4.6109 7.4230 -1.8488 39 1 3.6491 7.8076 -0.4013 40 1 6.0727 4.8839 -1.7296 41 1 6.7393 3.6423 -2.8667 42 1 6.6013 0.3694 -7.4037 43 1 6.2166 -0.2296 -4.7013 44 1 4.4582 -0.6934 -3.0505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245785994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:38 Heat of formation + Delta-G solvation = -37.615491 kcal Electronic energy + Delta-G solvation = -27002.551000 eV Core-core repulsion = 23270.396966 eV Total energy + Delta-G solvation = -3732.154034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.13247 -38.84706 -37.98287 -35.86470 -34.33856 -33.87713 -31.88613 -31.42912 -30.78814 -29.54703 -28.30794 -26.02238 -24.81290 -23.34300 -22.90497 -21.83565 -21.28542 -20.77613 -19.65032 -17.72316 -17.20694 -16.31014 -16.13805 -15.62332 -15.27040 -15.12687 -14.55956 -14.33234 -14.17802 -13.75717 -13.50524 -13.46765 -13.22666 -13.05777 -12.80883 -12.65005 -12.62228 -12.43131 -12.15747 -11.70983 -11.62122 -11.37401 -11.32297 -11.23750 -11.12369 -11.06561 -10.89740 -10.72745 -10.31360 -10.05394 -9.91042 -9.70738 -9.47819 -8.96992 -8.52889 -8.08716 -7.88289 -7.25628 -6.86871 -4.63844 1.12616 1.46955 2.71781 2.84168 2.98325 3.00678 3.03547 3.18477 3.33845 3.82943 4.07503 4.66146 4.76990 4.87572 5.05012 5.10018 5.12215 5.22204 5.25801 5.36299 5.45305 5.51436 5.54792 5.64140 5.66616 5.82125 5.84853 5.90925 5.95688 6.01275 6.06510 6.14817 6.21288 6.25415 6.44871 6.52387 6.69238 6.75054 6.84175 6.97143 7.04650 7.07238 7.11009 7.29585 7.39721 7.80039 8.03027 8.39225 8.54477 8.67907 8.69876 9.52141 10.05273 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.004363 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.225183 B = 6416.767721 C = 8905.897895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.363 6.363 4 C 0.524 3.476 5 O -0.460 6.460 6 C -0.096 4.096 7 C -0.080 4.080 8 C -0.135 4.135 9 C -0.063 4.063 10 C -0.085 4.085 11 C -0.147 4.147 12 C -0.114 4.114 13 C 0.041 3.959 14 C 0.132 3.868 15 C -0.238 4.238 16 C 0.125 3.875 17 C -0.458 4.458 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.789 5.789 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.200 4.200 26 C 0.092 3.908 27 N -0.537 5.537 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.283 0.717 43 H 0.126 0.874 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 6.514 10.103 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 O -0.282 6.282 4 C 0.365 3.635 5 O -0.342 6.342 6 C -0.098 4.098 7 C -0.098 4.098 8 C -0.154 4.154 9 C -0.063 4.063 10 C -0.122 4.122 11 C -0.205 4.205 12 C -0.132 4.132 13 C 0.040 3.960 14 C -0.002 4.002 15 C -0.262 4.262 16 C 0.117 3.883 17 C -0.489 4.489 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.415 5.415 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.222 4.222 26 C -0.061 4.061 27 N -0.251 5.251 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.079 5.806 10.494 13.927 hybrid contribution 1.332 -0.120 -1.352 1.902 sum -5.747 5.686 9.142 12.204 Atomic orbital electron populations 1.21779 0.93387 1.02402 1.03117 1.22839 0.94478 0.81085 1.02375 1.86546 1.24851 1.31429 1.85369 1.20526 0.80145 0.89611 0.73235 1.90805 1.59913 1.41714 1.41801 1.19059 1.00076 0.91922 0.98702 1.21081 0.98396 0.92608 0.97713 1.20840 0.98890 0.96021 0.99621 1.19933 0.96323 0.95592 0.94492 1.20566 0.99401 0.91255 1.01014 1.21754 0.99626 0.98597 1.00493 1.21096 1.00978 0.91982 0.99173 1.18778 0.92396 0.92750 0.92099 1.19059 0.95462 0.91610 0.94030 1.21886 1.02458 1.00121 1.01708 1.17745 0.90631 0.89892 0.90028 1.19578 1.09597 1.22059 0.97674 0.90010 1.25951 0.96933 0.92862 0.98436 1.69751 1.27388 1.25288 1.19052 0.86224 0.81519 0.80024 0.78483 1.19137 1.20156 1.18472 1.22295 1.00440 0.98342 1.01165 1.21909 0.96006 0.96859 0.91350 1.67521 1.31457 1.02183 1.23989 0.91949 0.91611 0.90716 0.91091 0.92018 0.85534 0.85829 0.91036 0.90752 0.92521 0.92196 0.92572 0.84719 0.87654 0.90574 0.85589 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.07 0.98 6.20 37.16 0.23 1.21 16 3 O -0.36 -6.48 10.23 -40.60 -0.42 -6.89 16 4 C 0.52 10.65 5.92 34.53 0.20 10.85 16 5 O -0.46 -10.62 14.17 -19.26 -0.27 -10.89 16 6 C -0.10 -1.83 5.78 -104.71 -0.61 -2.43 16 7 C -0.08 -1.19 9.78 -39.20 -0.38 -1.57 16 8 C -0.14 -1.76 9.67 -39.59 -0.38 -2.15 16 9 C -0.06 -0.87 5.13 -104.59 -0.54 -1.41 16 10 C -0.09 -0.89 6.05 -27.88 -0.17 -1.06 16 11 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 12 C -0.11 -1.93 9.04 -39.29 -0.36 -2.28 16 13 C 0.04 0.84 5.90 -104.54 -0.62 0.22 16 14 C 0.13 3.19 6.62 -83.07 -0.55 2.64 16 15 C -0.24 -5.87 9.24 -38.32 -0.35 -6.22 16 16 C 0.12 3.31 5.59 -106.56 -0.60 2.72 16 17 C -0.46 -11.84 9.12 -37.65 -0.34 -12.18 16 18 H 0.08 2.01 7.89 -52.49 -0.41 1.60 16 19 C 0.08 1.89 5.22 -17.34 -0.09 1.80 16 20 N -0.79 -19.89 10.94 55.55 0.61 -19.29 16 21 Si 0.91 18.13 29.58 -169.99 -5.03 13.10 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.20 -5.25 8.78 -38.64 -0.34 -5.59 16 26 C 0.09 2.30 11.15 -17.69 -0.20 2.10 16 27 N -0.54 -13.52 5.70 -9.96 -0.06 -13.58 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.14 2.20 6.22 -52.49 -0.33 1.87 16 41 H 0.11 2.34 6.23 -52.48 -0.33 2.01 16 42 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 43 H 0.13 3.34 6.27 -52.49 -0.33 3.01 16 44 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -30.58 371.69 -9.92 -40.50 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.02 Total: 7.12 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -4.33 Total: -15.67 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.55 Total: -32.86 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.69 Total: -17.79 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.58 -9.92 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245785994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.885 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds