Wall clock time and date at job start Tue Mar 31 2020 14:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45204 * 109.47173 * 2 1 4 4 C 1.34741 * 117.00354 * 179.97438 * 3 2 1 5 5 O 1.21493 * 119.99697 * 0.02562 * 4 3 2 6 6 C 1.47553 * 120.00197 * 180.02562 * 4 3 2 7 7 C 1.39526 * 120.21082 * 54.35946 * 6 4 3 8 8 C 1.37956 * 119.96349 * 179.97438 * 7 6 4 9 9 C 1.38505 * 120.40526 * 0.07043 * 8 7 6 10 10 C 1.50697 * 119.78158 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47315 * 270.01838 * 10 9 8 12 12 C 1.38072 * 120.43352 * 359.97438 * 9 8 7 13 13 C 1.39176 * 120.02324 * 359.97438 * 12 9 8 14 14 C 1.48211 * 120.20008 * 179.75208 * 13 12 9 15 15 C 1.38950 * 119.61918 * 6.34090 * 14 13 12 16 16 C 1.40864 * 118.75887 * 179.97438 * 15 14 13 17 17 C 1.41518 * 120.98793 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00003 * 25.87044 * 17 16 15 19 19 C 1.40060 * 119.99862 * 205.87129 * 17 16 15 20 20 N 1.30730 * 119.99733 * 14.81874 * 19 17 16 21 21 Si 1.86795 * 119.99710 * 194.81307 * 19 17 16 22 22 H 1.48503 * 109.46852 * 90.00588 * 21 19 17 23 23 H 1.48507 * 109.47112 * 210.00016 * 21 19 17 24 24 H 1.48500 * 109.47415 * 330.00494 * 21 19 17 25 25 C 1.41131 * 118.02536 * 359.97438 * 16 15 14 26 26 C 1.37806 * 119.08029 * 0.02562 * 25 16 15 27 27 N 1.31869 * 121.15906 * 359.74027 * 26 25 16 28 28 H 1.08997 * 109.47029 * 299.99435 * 1 2 3 29 29 H 1.09000 * 109.47147 * 60.00053 * 1 2 3 30 30 H 1.08997 * 109.46649 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47424 * 240.00105 * 2 1 3 32 32 H 1.08997 * 109.47476 * 120.00361 * 2 1 3 33 33 H 1.07998 * 120.01773 * 0.04559 * 7 6 4 34 34 H 1.08000 * 119.79946 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.47577 * 30.02237 * 10 9 8 36 36 H 1.09001 * 109.47086 * 150.02277 * 10 9 8 37 37 H 1.08996 * 109.47339 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.47360 * 300.00867 * 11 10 9 39 39 H 1.09008 * 109.46626 * 60.00546 * 11 10 9 40 40 H 1.07997 * 119.98936 * 180.02562 * 12 9 8 41 41 H 1.08004 * 120.61836 * 359.96165 * 15 14 13 42 42 H 0.97001 * 119.99695 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.45940 * 179.97438 * 25 16 15 44 44 H 1.07999 * 119.42105 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3498 1.5456 0.0005 5 8 4.0899 0.5821 0.0005 6 6 3.9138 2.9091 0.0011 7 6 3.5325 3.8261 0.9812 8 6 4.0634 5.0994 0.9772 9 6 4.9738 5.4763 0.0039 10 6 5.5444 6.8710 0.0125 11 6 4.6537 7.7918 -0.8240 12 6 5.3620 4.5825 -0.9743 13 6 4.8385 3.2930 -0.9867 14 6 5.2483 2.3321 -2.0381 15 6 6.2544 2.6793 -2.9314 16 6 6.6299 1.7521 -3.9231 17 6 7.6483 2.0568 -4.8573 18 1 8.4179 2.7707 -4.6035 19 6 7.6581 1.4326 -6.1111 20 7 6.5947 0.8014 -6.5352 21 14 9.1904 1.5021 -7.1770 22 1 10.0614 0.3397 -6.8681 23 1 8.7995 1.4609 -8.6091 24 1 9.9285 2.7609 -6.9014 25 6 5.9604 0.5102 -3.9574 26 6 4.9744 0.2550 -3.0290 27 7 4.6533 1.1467 -2.1121 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.8230 3.5389 1.7431 34 1 3.7667 5.8070 1.7373 35 1 5.5872 7.2398 1.0374 36 1 6.5490 6.8552 -0.4101 37 1 5.0667 8.8004 -0.8181 38 1 4.6109 7.4230 -1.8488 39 1 3.6491 7.8076 -0.4013 40 1 6.0727 4.8839 -1.7296 41 1 6.7393 3.6423 -2.8667 42 1 6.6013 0.3694 -7.4037 43 1 6.2166 -0.2296 -4.7013 44 1 4.4582 -0.6934 -3.0505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245785994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:37 Heat of formation + Delta-G solvation = -51.651470 kcal Electronic energy + Delta-G solvation = -27003.159646 eV Core-core repulsion = 23270.396966 eV Total energy + Delta-G solvation = -3732.762679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59857 -40.35960 -39.59840 -37.34486 -36.10189 -35.10512 -33.37215 -32.69406 -32.53344 -30.70316 -29.92971 -27.93040 -26.01418 -24.83159 -24.03634 -23.34767 -22.72574 -22.36762 -21.09837 -19.35713 -18.77182 -17.79148 -17.56256 -17.32475 -16.69261 -16.55436 -16.21938 -15.75688 -15.67462 -15.12266 -14.82820 -14.75312 -14.44501 -14.39228 -14.24416 -14.20390 -14.04068 -13.57339 -13.37844 -13.21964 -13.00231 -12.86850 -12.72132 -12.57967 -12.45070 -12.29395 -12.04356 -11.93403 -11.82573 -11.67683 -11.40494 -11.31175 -11.21408 -10.46672 -10.05283 -9.81813 -9.74782 -8.99293 -8.72860 -6.62513 -0.29069 0.18441 0.85464 1.14578 1.36415 1.49251 1.50642 1.57081 1.93234 2.15465 2.62884 2.87547 3.42622 3.69008 3.74719 3.86369 3.91871 4.04043 4.13875 4.18038 4.28423 4.34310 4.39407 4.47358 4.57797 4.62096 4.74513 4.80620 4.86982 4.89762 4.92427 4.94975 5.03666 5.14655 5.15534 5.16615 5.17631 5.23779 5.35510 5.37464 5.46988 5.53446 5.62300 5.64670 5.83673 5.92158 6.10581 6.43446 6.72165 6.74601 7.03572 7.59814 8.21989 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.004363 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.225183 B = 6416.767721 C = 8905.897895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.522 3.478 5 O -0.501 6.501 6 C -0.121 4.121 7 C -0.074 4.074 8 C -0.113 4.113 9 C -0.054 4.054 10 C -0.083 4.083 11 C -0.147 4.147 12 C -0.119 4.119 13 C -0.002 4.002 14 C 0.129 3.871 15 C -0.259 4.259 16 C 0.099 3.901 17 C -0.487 4.487 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.819 5.819 21 Si 0.991 3.009 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.254 1.254 25 C -0.225 4.225 26 C 0.083 3.917 27 N -0.548 5.548 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.293 0.707 43 H 0.115 0.885 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 9.201 11.769 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 O -0.281 6.281 4 C 0.365 3.635 5 O -0.387 6.387 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.131 4.131 9 C -0.054 4.054 10 C -0.120 4.120 11 C -0.204 4.204 12 C -0.137 4.137 13 C -0.004 4.004 14 C -0.004 4.004 15 C -0.282 4.282 16 C 0.091 3.909 17 C -0.517 4.517 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.444 5.444 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.177 1.177 25 C -0.247 4.247 26 C -0.070 4.070 27 N -0.263 5.263 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.190 0.810 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.570 8.507 12.172 16.668 hybrid contribution 1.355 -0.863 -1.740 2.368 sum -6.215 7.645 10.431 14.349 Atomic orbital electron populations 1.21786 0.89918 1.04294 1.03628 1.23146 0.97124 0.79677 1.01646 1.86543 1.23620 1.33184 1.84791 1.20947 0.80582 0.89958 0.71976 1.90771 1.60886 1.43130 1.43931 1.19241 1.00719 0.92250 1.00095 1.21450 0.98373 0.92530 0.96794 1.21401 0.96553 0.95711 0.99394 1.20361 0.95510 0.96515 0.93008 1.20674 0.99300 0.89025 1.03040 1.21756 1.00060 0.99358 0.99216 1.21190 1.00958 0.91331 1.00254 1.18792 0.95218 0.93592 0.92753 1.19714 0.94494 0.91779 0.94452 1.22082 1.03349 1.00678 1.02073 1.18145 0.91253 0.90420 0.91035 1.19886 1.09946 1.23266 0.98639 0.89576 1.26898 1.00066 0.91758 0.99264 1.69810 1.29363 1.25366 1.19877 0.85066 0.76954 0.80230 0.76665 1.18672 1.18972 1.17698 1.22226 1.01954 0.98593 1.01939 1.22180 0.95903 0.97662 0.91239 1.67645 1.32000 1.02762 1.23886 0.90372 0.92062 0.88133 0.93392 0.91324 0.82669 0.80981 0.88003 0.90664 0.90519 0.94125 0.91839 0.85095 0.86160 0.89650 0.86678 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.29 71.98 0.74 -2.07 16 2 C 0.06 1.72 6.20 71.98 0.45 2.17 16 3 O -0.36 -13.09 10.23 -56.51 -0.58 -13.66 16 4 C 0.52 21.82 5.92 70.28 0.42 22.24 16 5 O -0.50 -24.33 14.17 19.86 0.28 -24.05 16 6 C -0.12 -4.63 5.78 -19.92 -0.12 -4.74 16 7 C -0.07 -1.99 9.78 22.51 0.22 -1.77 16 8 C -0.11 -2.43 9.67 22.27 0.22 -2.22 16 9 C -0.05 -1.32 5.13 -19.84 -0.10 -1.43 16 10 C -0.08 -1.42 6.05 29.85 0.18 -1.24 16 11 C -0.15 -2.36 9.89 71.98 0.71 -1.64 16 12 C -0.12 -3.99 9.04 22.46 0.20 -3.79 16 13 C 0.00 -0.10 5.90 -19.81 -0.12 -0.22 16 14 C 0.13 6.59 6.62 41.81 0.28 6.86 16 15 C -0.26 -13.50 9.24 23.08 0.21 -13.29 16 16 C 0.10 5.58 5.59 -21.12 -0.12 5.46 16 17 C -0.49 -26.19 9.12 23.52 0.21 -25.98 16 18 H 0.09 4.39 7.89 -2.91 -0.02 4.36 16 19 C 0.04 1.84 5.22 85.30 0.45 2.28 16 20 N -0.82 -42.63 10.94 21.84 0.24 -42.39 16 21 Si 0.99 37.34 29.58 68.60 2.03 39.37 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 25 C -0.22 -12.60 8.78 22.88 0.20 -12.40 16 26 C 0.08 4.46 11.15 84.58 0.94 5.40 16 27 N -0.55 -29.29 5.70 -185.42 -1.06 -30.35 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.10 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.13 4.37 6.22 -2.91 -0.02 4.35 16 41 H 0.12 5.65 6.23 -2.91 -0.02 5.63 16 42 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 43 H 0.12 6.54 6.27 -2.91 -0.02 6.52 16 44 H 0.13 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -72.23 371.69 6.90 -65.33 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 1.01 Total: 32.14 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 4.98 Total: -26.38 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -0.82 Total: -72.74 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.30 Total: -37.71 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -72.23 6.90 -65.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245785994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.678 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds