Wall clock time and date at job start Tue Mar 31 2020 14:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46962 * 2 1 4 4 C 1.34761 * 116.99743 * 179.97438 * 3 2 1 5 5 O 1.21496 * 120.00122 * 0.02562 * 4 3 2 6 6 C 1.47521 * 119.99841 * 180.02562 * 4 3 2 7 7 C 1.39468 * 120.22445 * 354.57222 * 6 4 3 8 8 C 1.38012 * 119.98297 * 180.27896 * 7 6 4 9 9 C 1.38570 * 120.45527 * 359.76337 * 8 7 6 10 10 C 1.50692 * 119.77181 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47257 * 270.02446 * 10 9 8 12 12 C 1.37992 * 120.45488 * 359.97438 * 9 8 7 13 13 C 1.39440 * 120.00190 * 359.97438 * 12 9 8 14 14 C 1.47786 * 120.22272 * 180.02562 * 13 12 9 15 15 C 1.39955 * 119.45332 * 84.61999 * 14 13 12 16 16 C 1.36604 * 119.46203 * 179.97438 * 15 14 13 17 17 C 1.41316 * 118.41480 * 0.25075 * 16 15 14 18 18 C 1.40980 * 120.55433 * 179.72673 * 17 16 15 19 19 H 1.08000 * 120.00076 * 150.02627 * 18 17 16 20 20 C 1.40114 * 119.99829 * 330.02502 * 18 17 16 21 21 N 1.30731 * 119.99931 * 346.05692 * 20 18 17 22 22 Si 1.86794 * 120.00074 * 166.05483 * 20 18 17 23 23 H 1.48502 * 109.47124 * 89.99872 * 22 20 18 24 24 H 1.48499 * 109.47401 * 209.99974 * 22 20 18 25 25 H 1.48501 * 109.47109 * 330.00401 * 22 20 18 26 26 C 1.41029 * 118.89327 * 359.47936 * 17 16 15 27 27 N 1.31202 * 120.40653 * 0.53310 * 26 17 16 28 28 H 1.09005 * 109.47156 * 299.99971 * 1 2 3 29 29 H 1.09000 * 109.47091 * 59.99386 * 1 2 3 30 30 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47156 * 240.00029 * 2 1 3 32 32 H 1.08998 * 109.47202 * 119.99847 * 2 1 3 33 33 H 1.07994 * 120.01424 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.77682 * 179.74404 * 8 7 6 35 35 H 1.08995 * 109.47740 * 30.02053 * 10 9 8 36 36 H 1.08999 * 109.47269 * 150.02723 * 10 9 8 37 37 H 1.08997 * 109.47052 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47191 * 300.00221 * 11 10 9 39 39 H 1.08998 * 109.47339 * 59.99480 * 11 10 9 40 40 H 1.08004 * 120.00017 * 180.02562 * 12 9 8 41 41 H 1.08002 * 120.26718 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.79233 * 179.97438 * 16 15 14 43 43 H 0.97006 * 120.00240 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.79810 * 180.26948 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9138 2.9087 0.0011 7 6 3.0736 4.0161 -0.1128 8 6 3.6069 5.2890 -0.1175 9 6 4.9751 5.4776 -0.0046 10 6 5.5409 6.8743 -0.0120 11 6 5.8585 7.2883 -1.4504 12 6 5.8229 4.3954 0.1146 13 6 5.3044 3.1011 0.1225 14 6 6.2079 1.9385 0.2504 15 6 6.6119 1.5177 1.5226 16 6 7.4466 0.4428 1.6411 17 6 7.8787 -0.2061 0.4625 18 6 8.7450 -1.3162 0.5321 19 1 8.7020 -2.0832 -0.2271 20 6 9.6618 -1.4244 1.5861 21 7 9.9103 -0.3893 2.3451 22 14 10.5289 -3.0474 1.9069 23 1 11.7940 -3.0947 1.1306 24 1 10.8322 -3.1689 3.3555 25 1 9.6500 -4.1692 1.4894 26 6 7.4247 0.2719 -0.7842 27 7 6.6230 1.3086 -0.8459 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0063 3.8774 -0.2024 34 1 2.9536 6.1439 -0.2101 35 1 4.8114 7.5642 0.4119 36 1 6.4537 6.8997 0.5832 37 1 6.2682 8.2983 -1.4557 38 1 6.5881 6.5984 -1.8744 39 1 4.9458 7.2628 -2.0457 40 1 6.8880 4.5510 0.2025 41 1 6.2659 2.0380 2.4035 42 1 7.7721 0.1000 2.6121 43 1 10.5448 -0.4643 3.0750 44 1 7.7423 -0.2159 -1.6940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245786228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:42 Heat of formation + Delta-G solvation = -50.060491 kcal Electronic energy + Delta-G solvation = -26838.368688 eV Core-core repulsion = 23105.674998 eV Total energy + Delta-G solvation = -3732.693689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24176 -38.90897 -37.92717 -36.11924 -34.31428 -33.83222 -31.80817 -31.38914 -30.53641 -29.67140 -29.04131 -25.69055 -24.74618 -23.16234 -22.60582 -21.79534 -21.51480 -20.92222 -19.69455 -17.64655 -17.30407 -16.54092 -16.23174 -15.75632 -15.34246 -15.21920 -14.56788 -14.40055 -14.06420 -13.87706 -13.75910 -13.55634 -13.38658 -13.02416 -12.73976 -12.61954 -12.30764 -12.10748 -11.93650 -11.86598 -11.56521 -11.50821 -11.49061 -11.29307 -11.21922 -11.08801 -10.94513 -10.74004 -10.52069 -10.28683 -9.91851 -9.78383 -9.33077 -8.64969 -8.52018 -8.16041 -7.89727 -7.39993 -6.81750 -4.43842 1.02866 1.61851 2.62898 2.93904 2.98173 3.03250 3.04291 3.09406 3.22428 3.88040 4.04044 4.58462 4.77112 4.88812 4.96716 4.97738 5.08814 5.13990 5.24399 5.33357 5.34331 5.49148 5.52585 5.60622 5.73976 5.77888 5.78128 5.85990 5.91916 5.94124 6.06722 6.17895 6.20804 6.25772 6.43033 6.64057 6.69699 6.73590 6.82473 6.89006 6.98811 7.08238 7.12828 7.35806 7.74325 7.91568 7.98603 8.27621 8.47998 8.71076 8.78412 9.68627 10.11182 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004035 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.659469 B = 6938.355213 C = 9198.101777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.365 6.365 4 C 0.496 3.504 5 O -0.462 6.462 6 C -0.121 4.121 7 C -0.066 4.066 8 C -0.146 4.146 9 C -0.053 4.053 10 C -0.087 4.087 11 C -0.147 4.147 12 C -0.117 4.117 13 C 0.085 3.915 14 C 0.017 3.983 15 C -0.123 4.123 16 C -0.128 4.128 17 C 0.075 3.925 18 C -0.453 4.453 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.911 3.089 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.010 4.010 27 N -0.440 5.440 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.282 0.718 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 9.169 -1.444 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.284 6.284 4 C 0.339 3.661 5 O -0.346 6.346 6 C -0.123 4.123 7 C -0.084 4.084 8 C -0.164 4.164 9 C -0.053 4.053 10 C -0.124 4.124 11 C -0.204 4.204 12 C -0.136 4.136 13 C 0.084 3.916 14 C -0.120 4.120 15 C -0.143 4.143 16 C -0.153 4.153 17 C 0.071 3.929 18 C -0.483 4.483 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.184 1.184 26 C -0.173 4.173 27 N -0.148 5.148 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.243 9.203 -2.040 15.451 hybrid contribution 0.784 -1.282 1.124 1.876 sum -11.459 7.922 -0.917 13.961 Atomic orbital electron populations 1.21783 0.93007 1.02666 1.03189 1.22919 0.94800 0.80673 1.02680 1.86507 1.24690 1.31818 1.85380 1.21123 0.80192 0.90386 0.74442 1.90986 1.59372 1.41760 1.42527 1.19237 0.93355 0.89920 1.09810 1.21276 0.99571 0.91545 0.96003 1.20891 0.94480 0.96704 1.04294 1.20040 0.93496 0.95289 0.96479 1.20594 1.01215 0.92561 0.98045 1.21749 1.01957 1.01033 0.95704 1.21197 0.99988 0.90596 1.01782 1.18670 0.90168 0.92981 0.89771 1.18400 1.05144 0.98661 0.89792 1.21038 0.99424 0.98396 0.95479 1.21135 0.98022 0.97169 0.99000 1.18510 0.90542 0.92121 0.91734 1.19508 1.15050 1.05749 1.08003 0.89991 1.25963 0.96226 0.97683 0.94430 1.69743 1.27670 1.29773 1.14709 0.86258 0.79802 0.82133 0.78265 1.19348 1.20061 1.18369 1.22407 1.02427 0.96275 0.96223 1.66967 1.08964 1.07545 1.31282 0.91674 0.91677 0.90492 0.91383 0.91365 0.85022 0.85850 0.90972 0.90740 0.92489 0.92196 0.92545 0.85290 0.88996 0.86252 0.90665 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.86 6.20 37.16 0.23 1.09 16 3 O -0.37 -5.91 9.49 -40.66 -0.39 -6.29 16 4 C 0.50 9.74 7.86 34.51 0.27 10.01 16 5 O -0.46 -10.85 13.78 -19.26 -0.27 -11.12 16 6 C -0.12 -2.24 5.90 -104.65 -0.62 -2.86 16 7 C -0.07 -0.95 9.61 -39.21 -0.38 -1.33 16 8 C -0.15 -1.85 9.67 -39.54 -0.38 -2.23 16 9 C -0.05 -0.72 5.13 -104.59 -0.54 -1.26 16 10 C -0.09 -0.90 6.05 -27.88 -0.17 -1.07 16 11 C -0.15 -1.43 9.90 37.16 0.37 -1.06 16 12 C -0.12 -1.99 9.42 -39.22 -0.37 -2.36 16 13 C 0.09 1.72 5.49 -104.54 -0.57 1.15 16 14 C 0.02 0.40 3.82 -82.78 -0.32 0.09 16 15 C -0.12 -3.04 9.70 -39.53 -0.38 -3.42 16 16 C -0.13 -3.40 8.70 -39.00 -0.34 -3.74 16 17 C 0.08 2.06 5.53 -106.63 -0.59 1.47 16 18 C -0.45 -12.03 9.05 -37.84 -0.34 -12.37 16 19 H 0.08 2.08 7.89 -52.49 -0.41 1.66 16 20 C 0.08 1.87 5.20 -17.32 -0.09 1.78 16 21 N -0.79 -20.35 11.13 55.56 0.62 -19.73 16 22 Si 0.91 18.52 29.58 -169.99 -5.03 13.49 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.01 -0.27 10.97 -16.76 -0.18 -0.46 16 27 N -0.44 -11.40 9.76 -9.12 -0.09 -11.49 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.13 1.61 7.62 -52.49 -0.40 1.21 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 42 H 0.12 3.22 6.53 -52.49 -0.34 2.88 16 43 H 0.28 6.56 8.29 -40.82 -0.34 6.23 16 44 H 0.13 3.08 8.06 -52.48 -0.42 2.66 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -31.02 377.38 -9.68 -40.70 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.20 Total: 6.35 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -4.02 Total: -17.60 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.53 Total: -31.21 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.65 Total: -17.41 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.02 -9.68 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.360 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds