Wall clock time and date at job start Tue Mar 31 2020 14:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46962 * 2 1 4 4 C 1.34761 * 116.99743 * 179.97438 * 3 2 1 5 5 O 1.21496 * 120.00122 * 0.02562 * 4 3 2 6 6 C 1.47521 * 119.99841 * 180.02562 * 4 3 2 7 7 C 1.39468 * 120.22445 * 354.57222 * 6 4 3 8 8 C 1.38012 * 119.98297 * 180.27896 * 7 6 4 9 9 C 1.38570 * 120.45527 * 359.76337 * 8 7 6 10 10 C 1.50692 * 119.77181 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47257 * 270.02446 * 10 9 8 12 12 C 1.37992 * 120.45488 * 359.97438 * 9 8 7 13 13 C 1.39440 * 120.00190 * 359.97438 * 12 9 8 14 14 C 1.47786 * 120.22272 * 180.02562 * 13 12 9 15 15 C 1.39955 * 119.45332 * 84.61999 * 14 13 12 16 16 C 1.36604 * 119.46203 * 179.97438 * 15 14 13 17 17 C 1.41316 * 118.41480 * 0.25075 * 16 15 14 18 18 C 1.40980 * 120.55433 * 179.72673 * 17 16 15 19 19 H 1.08000 * 120.00076 * 150.02627 * 18 17 16 20 20 C 1.40114 * 119.99829 * 330.02502 * 18 17 16 21 21 N 1.30731 * 119.99931 * 346.05692 * 20 18 17 22 22 Si 1.86794 * 120.00074 * 166.05483 * 20 18 17 23 23 H 1.48502 * 109.47124 * 89.99872 * 22 20 18 24 24 H 1.48499 * 109.47401 * 209.99974 * 22 20 18 25 25 H 1.48501 * 109.47109 * 330.00401 * 22 20 18 26 26 C 1.41029 * 118.89327 * 359.47936 * 17 16 15 27 27 N 1.31202 * 120.40653 * 0.53310 * 26 17 16 28 28 H 1.09005 * 109.47156 * 299.99971 * 1 2 3 29 29 H 1.09000 * 109.47091 * 59.99386 * 1 2 3 30 30 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47156 * 240.00029 * 2 1 3 32 32 H 1.08998 * 109.47202 * 119.99847 * 2 1 3 33 33 H 1.07994 * 120.01424 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.77682 * 179.74404 * 8 7 6 35 35 H 1.08995 * 109.47740 * 30.02053 * 10 9 8 36 36 H 1.08999 * 109.47269 * 150.02723 * 10 9 8 37 37 H 1.08997 * 109.47052 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47191 * 300.00221 * 11 10 9 39 39 H 1.08998 * 109.47339 * 59.99480 * 11 10 9 40 40 H 1.08004 * 120.00017 * 180.02562 * 12 9 8 41 41 H 1.08002 * 120.26718 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.79233 * 179.97438 * 16 15 14 43 43 H 0.97006 * 120.00240 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.79810 * 180.26948 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9138 2.9087 0.0011 7 6 3.0736 4.0161 -0.1128 8 6 3.6069 5.2890 -0.1175 9 6 4.9751 5.4776 -0.0046 10 6 5.5409 6.8743 -0.0120 11 6 5.8585 7.2883 -1.4504 12 6 5.8229 4.3954 0.1146 13 6 5.3044 3.1011 0.1225 14 6 6.2079 1.9385 0.2504 15 6 6.6119 1.5177 1.5226 16 6 7.4466 0.4428 1.6411 17 6 7.8787 -0.2061 0.4625 18 6 8.7450 -1.3162 0.5321 19 1 8.7020 -2.0832 -0.2271 20 6 9.6618 -1.4244 1.5861 21 7 9.9103 -0.3893 2.3451 22 14 10.5289 -3.0474 1.9069 23 1 11.7940 -3.0947 1.1306 24 1 10.8322 -3.1689 3.3555 25 1 9.6500 -4.1692 1.4894 26 6 7.4247 0.2719 -0.7842 27 7 6.6230 1.3086 -0.8459 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0063 3.8774 -0.2024 34 1 2.9536 6.1439 -0.2101 35 1 4.8114 7.5642 0.4119 36 1 6.4537 6.8997 0.5832 37 1 6.2682 8.2983 -1.4557 38 1 6.5881 6.5984 -1.8744 39 1 4.9458 7.2628 -2.0457 40 1 6.8880 4.5510 0.2025 41 1 6.2659 2.0380 2.4035 42 1 7.7721 0.1000 2.6121 43 1 10.5448 -0.4643 3.0750 44 1 7.7423 -0.2159 -1.6940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245786228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:41 Heat of formation + Delta-G solvation = -65.577979 kcal Electronic energy + Delta-G solvation = -26839.041576 eV Core-core repulsion = 23105.674998 eV Total energy + Delta-G solvation = -3733.366578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67967 -40.39704 -39.60431 -37.56597 -36.04321 -35.10111 -33.19263 -32.56250 -32.54288 -30.99074 -30.52682 -27.45748 -25.96089 -24.35219 -24.02432 -23.52176 -22.89341 -22.45810 -21.10002 -19.29922 -19.00091 -17.96489 -17.55837 -17.36829 -17.06528 -16.40157 -16.36162 -15.66206 -15.59886 -15.34175 -15.12314 -14.60907 -14.46355 -14.32059 -14.12537 -13.95632 -13.63551 -13.60565 -13.53131 -13.34024 -13.12857 -12.95081 -12.86351 -12.59110 -12.55255 -12.41533 -12.12841 -11.99421 -11.77823 -11.62910 -11.53522 -11.47556 -11.16029 -10.21835 -10.11063 -9.82654 -9.62496 -9.38518 -8.71642 -6.46047 -0.28468 0.36696 0.72569 1.07928 1.35675 1.46077 1.51793 1.58658 1.65107 2.16763 2.67899 2.75856 3.58618 3.62696 3.74150 3.85457 3.96882 3.99640 4.09022 4.18776 4.27473 4.31922 4.35566 4.51980 4.56306 4.61011 4.69468 4.77079 4.79689 4.89809 4.91379 4.99386 5.04174 5.11521 5.12511 5.14812 5.16723 5.28703 5.34565 5.39126 5.44404 5.52696 5.59348 5.73004 5.87762 5.94616 6.00208 6.45902 6.72632 6.77150 6.82172 7.68416 8.24788 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004035 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.659469 B = 6938.355213 C = 9198.101777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.495 3.505 5 O -0.516 6.516 6 C -0.145 4.145 7 C -0.053 4.053 8 C -0.126 4.126 9 C -0.039 4.039 10 C -0.085 4.085 11 C -0.146 4.146 12 C -0.129 4.129 13 C 0.044 3.956 14 C 0.033 3.967 15 C -0.134 4.134 16 C -0.143 4.143 17 C 0.048 3.952 18 C -0.488 4.488 19 H 0.082 0.918 20 C 0.036 3.964 21 N -0.824 5.824 22 Si 0.989 3.011 23 H -0.258 1.258 24 H -0.263 1.263 25 H -0.259 1.259 26 C -0.033 4.033 27 N -0.456 5.456 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.292 0.708 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.486 11.567 -1.220 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.340 3.660 5 O -0.405 6.405 6 C -0.147 4.147 7 C -0.071 4.071 8 C -0.144 4.144 9 C -0.039 4.039 10 C -0.123 4.123 11 C -0.204 4.204 12 C -0.148 4.148 13 C 0.043 3.957 14 C -0.104 4.104 15 C -0.154 4.154 16 C -0.169 4.169 17 C 0.044 3.956 18 C -0.518 4.518 19 H 0.100 0.900 20 C -0.180 4.180 21 N -0.449 5.449 22 Si 0.809 3.191 23 H -0.183 1.183 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.194 4.194 27 N -0.163 5.163 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.178 0.822 34 H 0.190 0.810 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.428 11.624 -1.831 18.619 hybrid contribution 1.295 -1.821 1.032 2.461 sum -13.133 9.804 -0.800 16.408 Atomic orbital electron populations 1.21790 0.89138 1.04445 1.04103 1.23243 0.97683 0.79366 1.01695 1.86501 1.22723 1.33296 1.84572 1.21551 0.80890 0.90555 0.73006 1.90964 1.60696 1.43447 1.45392 1.19305 0.93056 0.90569 1.11779 1.21607 1.00438 0.90890 0.94120 1.21432 0.94453 0.97398 1.01080 1.20432 0.93775 0.95860 0.93821 1.20706 1.02065 0.90771 0.98712 1.21751 1.01893 1.01649 0.95080 1.21184 1.00235 0.90533 1.02848 1.18634 0.90621 0.92605 0.93886 1.18979 1.03771 0.98807 0.88879 1.21316 0.99116 0.98083 0.96854 1.21145 0.99029 0.98241 0.98438 1.18783 0.91557 0.93110 0.92152 1.19754 1.16341 1.06056 1.09643 0.89975 1.26862 0.96318 1.01393 0.93386 1.69788 1.28221 1.31787 1.15127 0.85099 0.78521 0.76810 0.78659 1.18268 1.18753 1.18328 1.22583 1.03345 0.97103 0.96404 1.67024 1.09245 1.07680 1.32381 0.90747 0.90671 0.88291 0.92458 0.92517 0.82177 0.80977 0.87754 0.90751 0.90434 0.94334 0.91757 0.86284 0.87220 0.87318 0.89694 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.47 6.20 71.98 0.45 1.91 16 3 O -0.35 -11.28 9.49 -56.71 -0.54 -11.81 16 4 C 0.49 19.90 7.86 70.27 0.55 20.46 16 5 O -0.52 -25.68 13.78 19.85 0.27 -25.41 16 6 C -0.15 -5.32 5.90 -19.88 -0.12 -5.43 16 7 C -0.05 -1.35 9.61 22.51 0.22 -1.13 16 8 C -0.13 -2.60 9.67 22.30 0.22 -2.38 16 9 C -0.04 -0.94 5.13 -19.85 -0.10 -1.04 16 10 C -0.09 -1.44 6.05 29.85 0.18 -1.26 16 11 C -0.15 -2.36 9.90 71.98 0.71 -1.64 16 12 C -0.13 -4.37 9.42 22.50 0.21 -4.16 16 13 C 0.04 1.80 5.49 -19.81 -0.11 1.69 16 14 C 0.03 1.70 3.82 41.90 0.16 1.86 16 15 C -0.13 -6.99 9.70 22.30 0.22 -6.77 16 16 C -0.14 -8.11 8.70 22.64 0.20 -7.91 16 17 C 0.05 2.81 5.53 -21.17 -0.12 2.69 16 18 C -0.49 -27.39 9.05 23.40 0.21 -27.18 16 19 H 0.08 4.42 7.89 -2.91 -0.02 4.39 16 20 C 0.04 1.85 5.20 85.31 0.44 2.29 16 21 N -0.82 -43.70 11.13 21.85 0.24 -43.45 16 22 Si 0.99 38.63 29.58 68.60 2.03 40.66 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 C -0.03 -1.87 10.97 85.47 0.94 -0.93 16 27 N -0.46 -25.05 9.76 -182.76 -1.78 -26.84 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.16 3.18 7.62 -2.91 -0.02 3.16 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.10 1.17 8.08 -2.39 -0.02 1.15 16 36 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 42 H 0.11 6.26 6.53 -2.91 -0.02 6.24 16 43 H 0.29 13.87 8.29 -92.70 -0.77 13.10 16 44 H 0.13 6.92 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -73.96 377.38 6.22 -67.73 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 1.00 Total: 29.63 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 5.00 Total: -30.51 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.54 Total: -70.29 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.26 Total: -37.22 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -73.96 6.22 -67.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.156 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds